Wall clock time and date at job start Tue Mar 31 2020 12:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 S 1.81393 * 109.46984 * 2 1 4 4 C 1.81405 * 102.99902 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.01915 * 306.39302 * 4 3 2 6 6 C 1.54269 * 110.02967 * 67.83710 * 4 3 2 7 7 C 1.54888 * 104.19658 * 142.89696 * 6 4 3 8 8 C 1.55015 * 102.75233 * 322.04003 * 7 6 4 9 9 C 1.53875 * 110.03244 * 184.99979 * 4 3 2 10 10 H 1.08997 * 110.03463 * 0.04990 * 9 4 3 11 11 N 1.46500 * 110.02951 * 121.43508 * 9 4 3 12 12 C 1.34775 * 119.99566 * 204.30912 * 11 9 4 13 13 O 1.21585 * 120.00513 * 359.97438 * 12 11 9 14 14 C 1.47642 * 119.99874 * 179.97438 * 12 11 9 15 15 C 1.40010 * 119.89516 * 359.72426 * 14 12 11 16 16 C 1.36316 * 120.10997 * 180.27253 * 15 14 12 17 17 C 1.40896 * 119.89008 * 0.02562 * 16 15 14 18 18 C 1.41101 * 120.10305 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00009 * 150.12283 * 18 17 16 20 20 C 1.40227 * 120.00461 * 330.12919 * 18 17 16 21 21 N 1.30643 * 120.00589 * 161.76041 * 20 18 17 22 22 Si 1.86799 * 119.99562 * 341.75969 * 20 18 17 23 23 H 1.48496 * 109.47339 * 95.41333 * 22 20 18 24 24 H 1.48507 * 109.47327 * 215.41426 * 22 20 18 25 25 H 1.48505 * 109.47251 * 335.41154 * 22 20 18 26 26 C 1.40887 * 119.79074 * 0.02562 * 17 16 15 27 27 C 1.36311 * 119.89441 * 359.97438 * 26 17 16 28 28 H 1.08997 * 109.47286 * 59.99632 * 1 2 3 29 29 H 1.09004 * 109.47234 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46994 * 299.99703 * 1 2 3 31 31 H 1.09000 * 109.46621 * 240.00018 * 2 1 3 32 32 H 1.09001 * 109.46870 * 120.00137 * 2 1 3 33 33 H 1.09007 * 110.48442 * 261.57416 * 6 4 3 34 34 H 1.09002 * 110.49033 * 24.21388 * 6 4 3 35 35 H 1.08996 * 110.75929 * 80.37403 * 7 6 4 36 36 H 1.09005 * 110.75101 * 203.56013 * 7 6 4 37 37 H 1.09000 * 110.50922 * 279.29881 * 8 7 6 38 38 H 1.09004 * 110.52320 * 156.61586 * 8 7 6 39 39 H 0.96991 * 120.00348 * 24.30726 * 11 9 4 40 40 H 1.08005 * 119.94576 * 0.28076 * 15 14 12 41 41 H 1.07997 * 120.05979 * 179.97438 * 16 15 14 42 42 H 0.97000 * 120.00041 * 179.97438 * 21 20 18 43 43 H 1.08005 * 120.05310 * 179.97438 * 26 17 16 44 44 H 1.07997 * 119.95001 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2391 0.8601 0.8254 6 6 4.4011 0.9027 -1.3412 7 6 5.7453 1.6148 -1.6331 8 6 5.4799 3.0612 -1.1428 9 6 4.6231 2.8774 0.1269 10 1 3.8730 3.6658 0.1885 11 7 5.4773 2.9037 1.3168 12 6 5.7793 4.0788 1.9036 13 8 5.3432 5.1171 1.4451 14 6 6.6397 4.1054 3.1031 15 6 7.1359 2.9081 3.6326 16 6 7.9261 2.9270 4.7432 17 6 8.2428 4.1543 5.3587 18 6 9.0608 4.1792 6.5081 19 1 9.6900 5.0347 6.7047 20 6 9.0569 3.0932 7.3952 21 7 10.0387 2.9388 8.2432 22 14 7.6480 1.8671 7.3644 23 1 8.0204 0.7062 6.5167 24 1 7.3668 1.4012 8.7461 25 1 6.4363 2.5194 6.8059 26 6 7.7402 5.3564 4.8228 27 6 6.9508 5.3273 3.7119 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.5521 -0.1725 -1.2444 34 1 3.6769 1.1179 -2.1269 35 1 6.5560 1.1571 -1.0662 36 1 5.9662 1.6004 -2.7004 37 1 4.9295 3.6248 -1.8961 38 1 6.4179 3.5609 -0.9010 39 1 5.8255 2.0755 1.6823 40 1 6.8923 1.9678 3.1603 41 1 8.3081 2.0029 5.1512 42 1 10.0358 2.1877 8.8571 43 1 7.9800 6.2995 5.2914 44 1 6.5647 6.2482 3.3006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270395013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:43 Heat of formation + Delta-G solvation = -41.220422 kcal Electronic energy + Delta-G solvation = -23872.254749 eV Core-core repulsion = 20493.155875 eV Total energy + Delta-G solvation = -3379.098874 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.71772 -38.07567 -36.96669 -33.87151 -33.33977 -33.03199 -30.77284 -29.96715 -29.11887 -27.87142 -25.63790 -23.83830 -22.20876 -21.43786 -21.08063 -20.39338 -19.59890 -17.64203 -17.37935 -16.74758 -16.10107 -15.60228 -15.47378 -15.09835 -14.72978 -14.44554 -14.10879 -13.78796 -13.70443 -13.62132 -12.99451 -12.88707 -12.73436 -12.65581 -12.28369 -12.11810 -11.87609 -11.78259 -11.74250 -11.30041 -11.26653 -11.18536 -11.01264 -10.89882 -10.84466 -10.41345 -10.29347 -10.02016 -9.75929 -9.36344 -9.10458 -8.74133 -7.97360 -7.83990 -7.75646 -7.23867 -4.74370 1.40649 1.98954 2.33560 2.65570 2.92150 3.06462 3.15861 3.63312 3.66868 3.79317 4.18072 4.33840 4.48692 4.60703 4.66021 4.79366 5.06598 5.10036 5.13808 5.23654 5.28885 5.37984 5.41678 5.46985 5.48173 5.60438 5.70176 5.75543 5.76154 5.78340 5.99772 6.04698 6.09529 6.14379 6.42026 6.60315 6.71574 6.84200 6.95195 7.22173 7.35613 7.51338 7.66423 7.92144 8.06011 8.09576 8.43361 8.52958 8.92101 9.76012 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.003135 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.095308 B = 8929.796232 C = 9760.819648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 S -0.245 6.245 4 C -0.068 4.068 5 H 0.094 0.906 6 C -0.119 4.119 7 C -0.121 4.121 8 C -0.130 4.130 9 C 0.168 3.832 10 H 0.096 0.904 11 N -0.733 5.733 12 C 0.574 3.426 13 O -0.567 6.567 14 C -0.283 4.283 15 C -0.036 4.036 16 C -0.248 4.248 17 C 0.107 3.893 18 C -0.425 4.425 19 H 0.097 0.903 20 C 0.082 3.918 21 N -0.786 5.786 22 Si 0.916 3.084 23 H -0.267 1.267 24 H -0.288 1.288 25 H -0.241 1.241 26 C -0.221 4.221 27 C -0.017 4.017 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.395 0.605 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.291 0.709 43 H 0.106 0.894 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.397 -9.687 -14.527 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.242 4.242 3 S -0.017 6.017 4 C -0.197 4.197 5 H 0.112 0.888 6 C -0.158 4.158 7 C -0.160 4.160 8 C -0.169 4.169 9 C 0.061 3.939 10 H 0.114 0.886 11 N -0.387 5.387 12 C 0.369 3.631 13 O -0.448 6.448 14 C -0.288 4.288 15 C -0.055 4.055 16 C -0.267 4.267 17 C 0.103 3.897 18 C -0.451 4.451 19 H 0.114 0.886 20 C -0.140 4.140 21 N -0.408 5.408 22 Si 0.741 3.259 23 H -0.193 1.193 24 H -0.215 1.215 25 H -0.163 1.163 26 C -0.241 4.241 27 C -0.036 4.036 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.231 0.769 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.171 -8.112 -14.585 20.655 hybrid contribution 0.517 -2.297 0.455 2.398 sum -11.654 -10.409 -14.129 21.066 Atomic orbital electron populations 1.21507 0.92301 1.02421 1.03258 1.23313 1.00163 0.95937 1.04776 1.87098 1.04604 1.12154 1.97865 1.24114 0.93493 1.00569 1.01534 0.88814 1.22797 0.98201 0.99524 0.95299 1.22529 0.96583 0.95636 1.01248 1.22798 1.00758 0.96756 0.96592 1.21101 0.92253 0.94708 0.85813 0.88563 1.46014 1.52982 1.09749 1.29917 1.18502 0.79273 0.82363 0.83002 1.90657 1.55375 1.32597 1.66171 1.18900 1.13201 0.94579 1.02094 1.20395 0.94835 0.95162 0.95087 1.20696 1.08396 0.97627 1.00022 1.17856 0.88426 0.91375 0.92014 1.19760 1.18600 1.03067 1.03702 0.88554 1.26367 0.96420 0.97405 0.93856 1.69606 1.28085 1.27733 1.15408 0.86229 0.82803 0.79844 0.76984 1.19330 1.21472 1.16341 1.20743 1.05229 0.97631 1.00462 1.20454 0.94132 0.95807 0.93188 0.91714 0.91228 0.91621 0.90187 0.90230 0.91312 0.89987 0.91229 0.91073 0.90658 0.90437 0.76949 0.88948 0.87912 0.89829 0.87616 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.92 37.16 0.37 -0.61 16 2 C -0.09 -0.77 6.55 37.16 0.24 -0.52 16 3 S -0.25 -2.79 20.69 -107.50 -2.22 -5.01 16 4 C -0.07 -0.73 3.18 -25.61 -0.08 -0.81 16 5 H 0.09 0.98 7.61 -51.93 -0.40 0.59 16 6 C -0.12 -1.02 6.26 -25.07 -0.16 -1.18 16 7 C -0.12 -1.11 6.91 -24.67 -0.17 -1.28 16 8 C -0.13 -1.55 6.54 -25.00 -0.16 -1.71 16 9 C 0.17 2.28 2.91 -66.81 -0.19 2.08 16 10 H 0.10 1.57 7.04 -51.93 -0.37 1.20 16 11 N -0.73 -11.38 4.99 -53.72 -0.27 -11.65 16 12 C 0.57 11.44 7.76 -12.42 -0.10 11.34 16 13 O -0.57 -12.83 15.99 5.29 0.08 -12.75 16 14 C -0.28 -6.03 5.89 -104.73 -0.62 -6.65 16 15 C -0.04 -0.73 9.47 -39.61 -0.38 -1.10 16 16 C -0.25 -5.61 7.11 -39.27 -0.28 -5.89 16 17 C 0.11 2.59 5.11 -106.80 -0.55 2.04 16 18 C -0.42 -10.78 9.56 -37.75 -0.36 -11.14 16 19 H 0.10 2.55 8.06 -52.49 -0.42 2.12 16 20 C 0.08 2.00 5.40 -17.31 -0.09 1.91 16 21 N -0.79 -19.48 13.92 55.56 0.77 -18.71 16 22 Si 0.92 19.41 24.52 -169.99 -4.17 15.24 16 23 H -0.27 -5.42 6.71 56.52 0.38 -5.04 16 24 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.24 -5.30 6.87 56.52 0.39 -4.91 16 26 C -0.22 -5.08 9.73 -39.27 -0.38 -5.46 16 27 C -0.02 -0.37 9.52 -39.61 -0.38 -0.75 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 32 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.70 7.81 -51.93 -0.41 0.29 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 39 H 0.40 5.38 6.31 -40.82 -0.26 5.12 16 40 H 0.09 1.54 6.37 -52.48 -0.33 1.21 16 41 H 0.10 2.27 4.72 -52.49 -0.25 2.02 16 42 H 0.29 6.46 8.29 -40.82 -0.34 6.12 16 43 H 0.11 2.27 8.06 -52.48 -0.42 1.85 16 44 H 0.11 2.28 7.63 -52.49 -0.40 1.88 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -27.94 365.84 -10.22 -38.15 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.64 Total: 8.95 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -3.28 Total: -19.73 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.51 Total: -30.36 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.17 Total: 15.24 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -2.22 Total: -5.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.94 -10.22 -38.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270395013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.068 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds