Wall clock time and date at job start Tue Mar 31 2020 12:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81391 * 103.00054 * 2 1 4 4 C 1.53000 * 109.47139 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.49873 * 304.93743 * 4 3 2 6 6 C 1.53048 * 109.52684 * 184.85624 * 4 3 2 7 7 C 1.53069 * 109.65758 * 178.73413 * 6 4 3 8 8 C 1.53185 * 109.29864 * 61.15485 * 7 6 4 9 9 N 1.46937 * 108.89282 * 305.57758 * 8 7 6 10 10 C 1.34775 * 120.62712 * 233.55905 * 9 8 7 11 11 O 1.21548 * 119.99469 * 174.21687 * 10 9 8 12 12 C 1.47882 * 120.00416 * 354.21895 * 10 9 8 13 13 C 1.39919 * 120.02573 * 324.61943 * 12 10 9 14 14 C 1.38332 * 120.35832 * 179.78815 * 13 12 10 15 15 C 1.37746 * 120.41339 * 0.46540 * 14 13 12 16 16 C 1.40752 * 120.03865 * 359.78966 * 15 14 13 17 17 C 1.41438 * 120.17714 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00159 * 330.75165 * 17 16 15 19 19 C 1.39934 * 119.99941 * 150.75363 * 17 16 15 20 20 N 1.30828 * 120.00085 * 349.37864 * 19 17 16 21 21 Si 1.86802 * 120.00000 * 169.38317 * 19 17 16 22 22 H 1.48493 * 109.47310 * 59.99492 * 21 19 17 23 23 H 1.48505 * 109.47029 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46822 * 299.99220 * 21 19 17 25 25 C 1.38998 * 120.02571 * 144.89638 * 12 10 9 26 26 C 1.46922 * 118.73655 * 53.53447 * 9 8 7 27 27 H 1.09001 * 109.47229 * 299.99820 * 1 2 3 28 28 H 1.09000 * 109.46892 * 59.99995 * 1 2 3 29 29 H 1.09000 * 109.47313 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47345 * 60.00440 * 3 2 1 31 31 H 1.08994 * 109.47586 * 300.00095 * 3 2 1 32 32 H 1.09000 * 109.45463 * 298.68892 * 6 4 3 33 33 H 1.09002 * 109.45829 * 58.64605 * 6 4 3 34 34 H 1.08997 * 109.39219 * 301.27491 * 7 6 4 35 35 H 1.09002 * 109.61924 * 181.16959 * 7 6 4 36 36 H 1.09005 * 109.59202 * 185.71786 * 8 7 6 37 37 H 1.08996 * 109.59031 * 65.43237 * 8 7 6 38 38 H 1.08004 * 119.82240 * 359.97438 * 13 12 10 39 39 H 1.08006 * 119.79098 * 180.21263 * 14 13 12 40 40 H 1.07995 * 119.98449 * 179.76918 * 15 14 13 41 41 H 0.97004 * 119.99869 * 180.02562 * 20 19 17 42 42 H 1.07994 * 120.20434 * 359.97438 * 25 12 10 43 43 H 1.09002 * 109.58523 * 66.18272 * 26 9 8 44 44 H 1.09001 * 109.58292 * 186.46651 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7423 1.9398 0.0006 5 1 4.1698 1.3963 0.8432 6 6 4.0886 3.4256 0.1228 7 6 5.6091 3.5990 0.1554 8 6 6.2076 3.0656 -1.1499 9 7 5.7596 1.6802 -1.3475 10 6 6.6527 0.6936 -1.5606 11 8 6.2796 -0.4618 -1.6179 12 6 8.0864 1.0167 -1.7248 13 6 8.4686 2.1938 -2.3776 14 6 9.8077 2.5049 -2.5311 15 6 10.7804 1.6554 -2.0518 16 6 10.4152 0.4641 -1.3971 17 6 11.4115 -0.4105 -0.9043 18 1 12.3749 -0.4600 -1.3899 19 6 11.1489 -1.2119 0.2124 20 7 10.0706 -1.0082 0.9247 21 14 12.3380 -2.5724 0.6861 22 1 13.6726 -1.9866 0.9706 23 1 11.8349 -3.2704 1.8964 24 1 12.4515 -3.5423 -0.4327 25 6 9.0554 0.1484 -1.2358 26 6 4.3197 1.3910 -1.3079 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8032 2.2371 0.8900 31 1 1.8032 2.2371 -0.8899 32 1 3.6819 3.9647 -0.7329 33 1 3.6578 3.8246 1.0412 34 1 6.0188 3.0419 0.9979 35 1 5.8547 4.6555 0.2633 36 1 7.2957 3.0929 -1.0910 37 1 5.8713 3.6809 -1.9844 38 1 7.7140 2.8646 -2.7610 39 1 10.0924 3.4176 -3.0334 40 1 11.8238 1.9033 -2.1787 41 1 9.8888 -1.5635 1.6991 42 1 8.7651 -0.7632 -0.7349 43 1 3.8273 1.8703 -2.1540 44 1 4.1620 0.3135 -1.3557 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294599357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:15 Heat of formation + Delta-G solvation = -23.622073 kcal Electronic energy + Delta-G solvation = -24571.552187 eV Core-core repulsion = 21193.216435 eV Total energy + Delta-G solvation = -3378.335752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.91709 -37.67858 -36.73349 -34.05160 -33.36233 -31.68999 -30.21006 -29.45615 -29.20073 -26.91293 -25.42444 -25.25658 -22.33461 -22.01636 -20.93442 -20.16113 -18.72920 -17.49778 -16.32623 -15.95391 -15.82237 -15.46256 -14.87500 -14.77771 -14.46555 -14.40639 -13.97636 -13.85917 -13.64652 -13.26948 -13.09926 -12.90754 -12.87094 -12.64952 -12.35882 -12.17349 -11.88595 -11.56248 -11.20742 -11.12572 -11.05320 -10.94442 -10.83217 -10.59461 -10.49099 -10.31246 -10.02301 -9.94209 -9.66998 -9.23506 -8.93403 -8.22815 -7.77962 -7.58279 -7.43195 -6.73934 -4.42180 1.51947 2.30364 2.45824 2.82738 3.09287 3.11276 3.16069 3.44037 3.78197 3.94584 4.55253 4.58613 4.65361 4.81318 4.90014 4.93530 5.03193 5.20810 5.25736 5.40591 5.41715 5.47166 5.52235 5.58533 5.65393 5.69239 5.86843 5.96708 6.09004 6.12415 6.15555 6.24060 6.31798 6.39072 6.69928 6.94319 7.00079 7.06867 7.23191 7.39616 7.67884 7.79218 7.90072 8.03654 8.18350 8.51403 8.82956 8.83924 8.92676 10.20701 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.003502 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.057566 B = 7993.005791 C = 9143.955425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.250 6.250 3 C -0.078 4.078 4 C -0.088 4.088 5 H 0.085 0.915 6 C -0.107 4.107 7 C -0.136 4.136 8 C 0.093 3.907 9 N -0.614 5.614 10 C 0.570 3.430 11 O -0.545 6.545 12 C -0.124 4.124 13 C -0.218 4.218 14 C -0.101 4.101 15 C -0.208 4.208 16 C 0.101 3.899 17 C -0.461 4.461 18 H 0.080 0.920 19 C 0.072 3.928 20 N -0.797 5.797 21 Si 0.913 3.087 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.090 4.090 26 C 0.118 3.882 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.283 0.717 42 H 0.130 0.870 43 H 0.060 0.940 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.672 8.671 0.355 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.024 6.024 3 C -0.226 4.226 4 C -0.108 4.108 5 H 0.104 0.896 6 C -0.147 4.147 7 C -0.174 4.174 8 C -0.030 4.030 9 N -0.348 5.348 10 C 0.362 3.638 11 O -0.423 6.423 12 C -0.128 4.128 13 C -0.238 4.238 14 C -0.120 4.120 15 C -0.228 4.228 16 C 0.099 3.901 17 C -0.491 4.491 18 H 0.098 0.902 19 C -0.145 4.145 20 N -0.423 5.423 21 Si 0.738 3.262 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.110 4.110 26 C -0.005 4.005 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.135 0.865 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.148 0.852 43 H 0.078 0.922 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.340 7.056 0.539 15.991 hybrid contribution -0.517 0.590 0.388 0.875 sum -14.857 7.646 0.928 16.734 Atomic orbital electron populations 1.23390 0.95281 1.06398 1.04533 1.87439 1.06027 1.11013 1.97950 1.23445 0.99797 0.94578 1.04820 1.21331 0.91647 0.97513 1.00306 0.89622 1.21562 0.96707 0.94534 1.01865 1.21955 0.94917 1.01423 0.99125 1.22283 1.03023 0.81654 0.96025 1.47925 1.05660 1.08320 1.72894 1.18946 0.86426 0.84061 0.74403 1.90691 1.80624 1.19819 1.51128 1.19448 0.90706 0.97761 1.04842 1.20562 0.95436 0.98436 1.09355 1.20461 0.92978 0.98346 1.00172 1.21156 0.97325 0.95962 1.08319 1.17591 0.92235 0.90692 0.89600 1.19538 1.00084 1.18788 1.10690 0.90233 1.25919 0.95839 0.97177 0.95593 1.69741 1.24128 1.34760 1.13660 0.86279 0.80609 0.80729 0.78589 1.19039 1.20275 1.18796 1.21577 0.91603 0.98393 0.99430 1.21556 0.80690 1.02952 0.95300 0.90780 0.90689 0.88191 0.89912 0.90009 0.91791 0.91805 0.91177 0.90662 0.86463 0.92237 0.88217 0.88825 0.88593 0.90605 0.85204 0.92223 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 10.76 101.05 1.09 0.06 16 2 S -0.25 -3.05 21.30 -107.50 -2.29 -5.34 16 3 C -0.08 -0.78 5.39 37.16 0.20 -0.58 16 4 C -0.09 -1.08 2.34 -90.49 -0.21 -1.29 16 5 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 6 C -0.11 -1.11 5.16 -26.67 -0.14 -1.24 16 7 C -0.14 -1.64 6.09 -26.60 -0.16 -1.80 16 8 C 0.09 1.35 4.76 -3.71 -0.02 1.34 16 9 N -0.61 -10.90 2.97 -173.86 -0.52 -11.42 16 10 C 0.57 12.93 7.38 -12.31 -0.09 12.84 16 11 O -0.54 -14.11 16.23 5.32 0.09 -14.02 16 12 C -0.12 -2.95 5.28 -105.04 -0.56 -3.51 16 13 C -0.22 -4.55 7.36 -38.92 -0.29 -4.83 16 14 C -0.10 -2.12 10.01 -39.73 -0.40 -2.52 16 15 C -0.21 -4.88 9.78 -38.81 -0.38 -5.26 16 16 C 0.10 2.67 5.54 -106.87 -0.59 2.08 16 17 C -0.46 -12.15 9.06 -37.73 -0.34 -12.49 16 18 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 19 C 0.07 1.83 5.25 -17.34 -0.09 1.74 16 20 N -0.80 -21.09 10.87 55.55 0.60 -20.49 16 21 Si 0.91 19.01 29.57 -169.99 -5.03 13.98 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 25 C -0.09 -2.40 8.21 -38.44 -0.32 -2.72 16 26 C 0.12 1.80 5.45 -3.71 -0.02 1.78 16 27 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.10 0.74 8.14 -51.92 -0.42 0.31 16 30 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.12 1.95 4.46 -51.93 -0.23 1.72 16 37 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 38 H 0.10 1.78 6.03 -52.48 -0.32 1.47 16 39 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 40 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 41 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 42 H 0.13 3.78 6.19 -52.49 -0.32 3.46 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.10 1.79 6.21 -51.93 -0.32 1.47 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -29.91 362.86 -10.64 -40.56 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.66 Total: 7.67 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.31 Total: -16.42 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.09 Total: -31.90 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.09 Total: -14.02 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.29 Total: -5.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.91 -10.64 -40.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294599357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.933 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds