Wall clock time and date at job start Tue Mar 31 2020 12:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81391 * 103.00054 * 2 1 4 4 C 1.53000 * 109.47139 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.49873 * 304.93743 * 4 3 2 6 6 C 1.53048 * 109.52684 * 184.85624 * 4 3 2 7 7 C 1.53069 * 109.65758 * 178.73413 * 6 4 3 8 8 C 1.53185 * 109.29864 * 61.15485 * 7 6 4 9 9 N 1.46937 * 108.89282 * 305.57758 * 8 7 6 10 10 C 1.34775 * 120.62712 * 233.55905 * 9 8 7 11 11 O 1.21548 * 119.99469 * 174.21687 * 10 9 8 12 12 C 1.47882 * 120.00416 * 354.21895 * 10 9 8 13 13 C 1.39919 * 120.02573 * 324.61943 * 12 10 9 14 14 C 1.38332 * 120.35832 * 179.78815 * 13 12 10 15 15 C 1.37746 * 120.41339 * 0.46540 * 14 13 12 16 16 C 1.40752 * 120.03865 * 359.78966 * 15 14 13 17 17 C 1.41438 * 120.17714 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00159 * 330.75165 * 17 16 15 19 19 C 1.39934 * 119.99941 * 150.75363 * 17 16 15 20 20 N 1.30828 * 120.00085 * 349.37864 * 19 17 16 21 21 Si 1.86802 * 120.00000 * 169.38317 * 19 17 16 22 22 H 1.48493 * 109.47310 * 59.99492 * 21 19 17 23 23 H 1.48505 * 109.47029 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46822 * 299.99220 * 21 19 17 25 25 C 1.38998 * 120.02571 * 144.89638 * 12 10 9 26 26 C 1.46922 * 118.73655 * 53.53447 * 9 8 7 27 27 H 1.09001 * 109.47229 * 299.99820 * 1 2 3 28 28 H 1.09000 * 109.46892 * 59.99995 * 1 2 3 29 29 H 1.09000 * 109.47313 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47345 * 60.00440 * 3 2 1 31 31 H 1.08994 * 109.47586 * 300.00095 * 3 2 1 32 32 H 1.09000 * 109.45463 * 298.68892 * 6 4 3 33 33 H 1.09002 * 109.45829 * 58.64605 * 6 4 3 34 34 H 1.08997 * 109.39219 * 301.27491 * 7 6 4 35 35 H 1.09002 * 109.61924 * 181.16959 * 7 6 4 36 36 H 1.09005 * 109.59202 * 185.71786 * 8 7 6 37 37 H 1.08996 * 109.59031 * 65.43237 * 8 7 6 38 38 H 1.08004 * 119.82240 * 359.97438 * 13 12 10 39 39 H 1.08006 * 119.79098 * 180.21263 * 14 13 12 40 40 H 1.07995 * 119.98449 * 179.76918 * 15 14 13 41 41 H 0.97004 * 119.99869 * 180.02562 * 20 19 17 42 42 H 1.07994 * 120.20434 * 359.97438 * 25 12 10 43 43 H 1.09002 * 109.58523 * 66.18272 * 26 9 8 44 44 H 1.09001 * 109.58292 * 186.46651 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7423 1.9398 0.0006 5 1 4.1698 1.3963 0.8432 6 6 4.0886 3.4256 0.1228 7 6 5.6091 3.5990 0.1554 8 6 6.2076 3.0656 -1.1499 9 7 5.7596 1.6802 -1.3475 10 6 6.6527 0.6936 -1.5606 11 8 6.2796 -0.4618 -1.6179 12 6 8.0864 1.0167 -1.7248 13 6 8.4686 2.1938 -2.3776 14 6 9.8077 2.5049 -2.5311 15 6 10.7804 1.6554 -2.0518 16 6 10.4152 0.4641 -1.3971 17 6 11.4115 -0.4105 -0.9043 18 1 12.3749 -0.4600 -1.3899 19 6 11.1489 -1.2119 0.2124 20 7 10.0706 -1.0082 0.9247 21 14 12.3380 -2.5724 0.6861 22 1 13.6726 -1.9866 0.9706 23 1 11.8349 -3.2704 1.8964 24 1 12.4515 -3.5423 -0.4327 25 6 9.0554 0.1484 -1.2358 26 6 4.3197 1.3910 -1.3079 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8032 2.2371 0.8900 31 1 1.8032 2.2371 -0.8899 32 1 3.6819 3.9647 -0.7329 33 1 3.6578 3.8246 1.0412 34 1 6.0188 3.0419 0.9979 35 1 5.8547 4.6555 0.2633 36 1 7.2957 3.0929 -1.0910 37 1 5.8713 3.6809 -1.9844 38 1 7.7140 2.8646 -2.7610 39 1 10.0924 3.4176 -3.0334 40 1 11.8238 1.9033 -2.1787 41 1 9.8888 -1.5635 1.6991 42 1 8.7651 -0.7632 -0.7349 43 1 3.8273 1.8703 -2.1540 44 1 4.1620 0.3135 -1.3557 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294599357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:14 Heat of formation + Delta-G solvation = -39.662921 kcal Electronic energy + Delta-G solvation = -24572.247771 eV Core-core repulsion = 21193.216435 eV Total energy + Delta-G solvation = -3379.031335 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43809 -39.21960 -38.41248 -35.73600 -34.84401 -32.81433 -31.97572 -31.30279 -29.87974 -28.06392 -27.05648 -26.74059 -23.66223 -23.44588 -22.71158 -21.37728 -20.26865 -19.24134 -17.66120 -17.44821 -17.25803 -16.88620 -16.55931 -16.28703 -15.78176 -15.41233 -15.23922 -15.07368 -14.66167 -14.56161 -14.48569 -14.22046 -14.14149 -13.95245 -13.71841 -13.49582 -13.22867 -12.94943 -12.91930 -12.82116 -12.39921 -12.27949 -12.13946 -11.92016 -11.85340 -11.67533 -11.52108 -11.42629 -11.09762 -10.80382 -10.68850 -9.70855 -9.37354 -9.30363 -8.71944 -8.62117 -6.40584 0.46159 0.73899 1.00548 1.35328 1.47285 1.48388 1.71084 1.89001 2.12267 2.19620 2.76552 3.57521 3.63643 3.65881 3.77126 4.00638 4.08171 4.21040 4.28964 4.34222 4.35040 4.43844 4.46471 4.57103 4.60421 4.65481 4.68513 4.86765 4.87412 4.89475 4.92824 5.05111 5.08002 5.11497 5.19613 5.21166 5.31312 5.42516 5.51265 5.64442 5.84552 5.94553 6.04550 6.27713 6.39168 6.61393 6.88884 6.94295 7.21907 8.33958 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.003502 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.057566 B = 7993.005791 C = 9143.955425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 S -0.348 6.348 3 C -0.054 4.054 4 C -0.082 4.082 5 H 0.049 0.951 6 C -0.099 4.099 7 C -0.133 4.133 8 C 0.084 3.916 9 N -0.603 5.603 10 C 0.558 3.442 11 O -0.595 6.595 12 C -0.134 4.134 13 C -0.192 4.192 14 C -0.096 4.096 15 C -0.211 4.211 16 C 0.069 3.931 17 C -0.499 4.499 18 H 0.083 0.917 19 C 0.026 3.974 20 N -0.838 5.838 21 Si 0.984 3.016 22 H -0.251 1.251 23 H -0.273 1.273 24 H -0.262 1.262 25 C -0.127 4.127 26 C 0.115 3.885 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.111 0.889 41 H 0.283 0.717 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.279 12.576 -0.552 20.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 S -0.123 6.123 3 C -0.202 4.202 4 C -0.102 4.102 5 H 0.068 0.932 6 C -0.138 4.138 7 C -0.171 4.171 8 C -0.037 4.037 9 N -0.335 5.335 10 C 0.350 3.650 11 O -0.478 6.478 12 C -0.137 4.137 13 C -0.211 4.211 14 C -0.114 4.114 15 C -0.231 4.231 16 C 0.067 3.933 17 C -0.529 4.529 18 H 0.101 0.899 19 C -0.187 4.187 20 N -0.465 5.465 21 Si 0.805 3.195 22 H -0.175 1.175 23 H -0.198 1.198 24 H -0.187 1.187 25 C -0.148 4.148 26 C -0.007 4.007 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.111 0.889 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.967 11.034 -0.369 19.412 hybrid contribution -0.164 -0.450 0.580 0.752 sum -16.132 10.584 0.211 19.295 Atomic orbital electron populations 1.23382 0.90640 1.07161 1.06065 1.87891 1.11304 1.14893 1.98211 1.23371 0.97771 0.92054 1.07008 1.21242 0.93161 0.98775 0.97014 0.93195 1.21563 0.95272 0.92593 1.04377 1.21951 0.96165 1.02669 0.96300 1.22550 1.02086 0.80023 0.99071 1.48007 1.06199 1.08752 1.70535 1.18978 0.86888 0.84372 0.74789 1.90655 1.81300 1.22004 1.53796 1.19712 0.91013 0.98371 1.04645 1.21011 0.96688 0.96986 1.06424 1.20951 0.92212 0.99269 0.98965 1.21463 0.98951 0.95287 1.07358 1.17925 0.92156 0.92315 0.90937 1.19829 1.00551 1.20673 1.11841 0.89857 1.26824 0.97465 0.99191 0.95189 1.69867 1.26170 1.36087 1.14332 0.85215 0.78677 0.77453 0.78157 1.17497 1.19791 1.18684 1.21329 0.92944 0.98457 1.02064 1.21738 0.79257 1.01501 0.98217 0.89157 0.89087 0.87896 0.87672 0.87575 0.88878 0.89473 0.94188 0.87322 0.88658 0.88344 0.84159 0.83962 0.87129 0.90634 0.89242 0.89253 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 10.76 113.37 1.22 -0.26 16 2 S -0.35 -8.50 21.30 -56.49 -1.20 -9.71 16 3 C -0.05 -0.94 5.39 71.98 0.39 -0.55 16 4 C -0.08 -1.89 2.34 -10.71 -0.03 -1.91 16 5 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 6 C -0.10 -1.61 5.16 30.63 0.16 -1.45 16 7 C -0.13 -2.78 6.09 30.68 0.19 -2.60 16 8 C 0.08 2.19 4.76 86.36 0.41 2.61 16 9 N -0.60 -21.15 2.97 -822.26 -2.45 -23.60 16 10 C 0.56 26.47 7.38 86.80 0.64 27.11 16 11 O -0.60 -33.32 16.23 -3.87 -0.06 -33.38 16 12 C -0.13 -6.58 5.28 -20.13 -0.11 -6.68 16 13 C -0.19 -7.62 7.36 22.70 0.17 -7.45 16 14 C -0.10 -3.76 10.01 22.18 0.22 -3.54 16 15 C -0.21 -9.84 9.78 22.77 0.22 -9.62 16 16 C 0.07 3.80 5.54 -21.32 -0.12 3.68 16 17 C -0.50 -27.70 9.06 23.47 0.21 -27.49 16 18 H 0.08 4.35 7.87 -2.91 -0.02 4.32 16 19 C 0.03 1.41 5.25 85.25 0.45 1.86 16 20 N -0.84 -47.76 10.87 21.82 0.24 -47.53 16 21 Si 0.98 40.81 29.57 68.60 2.03 42.84 16 22 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 23 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 C -0.13 -7.28 8.21 23.01 0.19 -7.09 16 26 C 0.12 3.43 5.45 86.36 0.47 3.90 16 27 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.10 2.94 4.46 -2.38 -0.01 2.93 16 37 H 0.10 1.90 8.04 -2.39 -0.02 1.88 16 38 H 0.14 4.41 6.03 -2.91 -0.02 4.39 16 39 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 40 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 41 H 0.28 15.00 8.30 -92.71 -0.77 14.23 16 42 H 0.09 5.77 6.19 -2.91 -0.02 5.75 16 43 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.06 2.41 6.21 -2.39 -0.01 2.39 16 Total: -1.00 -75.04 362.86 4.23 -70.81 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.99 Total: 30.06 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 4.69 Total: -29.50 kcal Atomic # 7 Polarization: -68.91 SS G_CDS: -2.21 Total: -71.12 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.06 Total: -33.38 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.20 Total: -9.71 kcal Total: -75.04 4.23 -70.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294599357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.148 kcal (2) G-P(sol) polarization free energy of solvation -75.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds