Wall clock time and date at job start Tue Mar 31 2020 12:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34774 * 120.00320 * 2 1 4 4 O 1.21281 * 120.00573 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99667 * 359.72486 * 3 2 1 6 6 S 1.81003 * 109.47242 * 180.27399 * 5 3 2 7 7 C 1.76201 * 99.99969 * 179.97438 * 6 5 3 8 8 H 1.08001 * 120.00157 * 0.02562 * 7 6 5 9 9 C 1.38801 * 119.99966 * 180.02562 * 7 6 5 10 10 N 1.31629 * 119.99910 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00121 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47155 * 60.00118 * 11 9 7 13 13 H 1.48499 * 109.47307 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46776 * 299.99978 * 11 9 7 15 15 C 1.46500 * 120.00074 * 180.02562 * 2 1 3 16 16 H 1.09003 * 110.01686 * 172.53874 * 15 2 1 17 17 C 1.54269 * 110.03480 * 51.09286 * 15 2 1 18 18 C 1.54888 * 104.19634 * 217.10559 * 17 15 2 19 19 C 1.54891 * 102.74761 * 37.94377 * 18 17 15 20 20 C 1.53874 * 110.03205 * 293.92517 * 15 2 1 21 21 H 1.08996 * 110.03503 * 238.57264 * 20 15 2 22 22 C 1.50703 * 110.03114 * 359.95444 * 20 15 2 23 23 C 1.38239 * 119.99672 * 284.53129 * 22 20 15 24 24 C 1.38233 * 119.99825 * 179.76651 * 23 22 20 25 25 C 1.38235 * 119.99863 * 0.50746 * 24 23 22 26 26 C 1.38234 * 120.00267 * 359.74262 * 25 24 23 27 27 C 1.38235 * 120.00154 * 104.80527 * 22 20 15 28 28 H 1.08999 * 109.47104 * 84.32973 * 1 2 3 29 29 H 1.09002 * 109.47058 * 204.32557 * 1 2 3 30 30 H 1.09000 * 109.47134 * 324.32830 * 1 2 3 31 31 H 1.09004 * 109.47020 * 300.27182 * 5 3 2 32 32 H 1.08997 * 109.47331 * 60.27128 * 5 3 2 33 33 H 0.97001 * 120.00409 * 179.97438 * 10 9 7 34 34 H 1.09003 * 110.48288 * 335.78337 * 17 15 2 35 35 H 1.08998 * 110.48646 * 98.42735 * 17 15 2 36 36 H 1.08997 * 110.75752 * 279.62969 * 18 17 15 37 37 H 1.09000 * 110.75210 * 156.25488 * 18 17 15 38 38 H 1.09002 * 110.48598 * 203.37701 * 19 18 17 39 39 H 1.09004 * 110.60088 * 80.79169 * 19 18 17 40 40 H 1.07999 * 119.99977 * 359.97438 * 23 22 20 41 41 H 1.08003 * 120.00446 * 180.22622 * 24 23 22 42 42 H 1.08000 * 120.00013 * 179.72504 * 25 24 23 43 43 H 1.08002 * 120.00482 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.00091 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0063 6 16 2.5616 3.8480 -0.0128 7 6 1.4415 5.2082 -0.0202 8 1 0.3762 5.0305 -0.0192 9 6 1.9282 6.5080 -0.0271 10 7 3.2265 6.7246 -0.0278 11 14 0.7407 7.9500 -0.0342 12 1 -0.1138 7.8934 1.1790 13 1 1.5068 9.2221 -0.0405 14 1 -0.1147 7.8807 -1.2460 15 6 2.1975 -1.2687 -0.0006 16 1 3.2635 -1.0840 -0.1335 17 6 1.6734 -2.1811 -1.1288 18 6 1.7196 -3.6041 -0.5189 19 6 1.2893 -3.3609 0.9490 20 6 1.9533 -2.0189 1.3205 21 1 2.9008 -2.1990 1.8283 22 6 1.0368 -1.2166 2.2080 23 6 1.5186 -0.1057 2.8749 24 6 0.6768 0.6330 3.6851 25 6 -0.6441 0.2548 3.8367 26 6 -1.1246 -0.8591 3.1739 27 6 -0.2841 -1.5949 2.3596 28 1 -0.3633 0.1015 -1.0226 29 1 -0.3633 -0.9364 0.4233 30 1 -0.3633 0.8348 0.5993 31 1 0.7588 2.5258 -0.8966 32 1 0.7587 2.5343 0.8834 33 1 3.5668 7.6330 -0.0330 34 1 0.6506 -1.9121 -1.3927 35 1 2.3227 -2.1191 -2.0021 36 1 2.7300 -4.0106 -0.5630 37 1 1.0141 -4.2638 -1.0240 38 1 1.6582 -4.1600 1.5920 39 1 0.2045 -3.2833 1.0229 40 1 2.5519 0.1869 2.7602 41 1 1.0522 1.5031 4.2033 42 1 -1.3007 0.8293 4.4732 43 1 -2.1565 -1.1549 3.2926 44 1 -0.6595 -2.4651 1.8417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297198514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:22 Heat of formation + Delta-G solvation = 0.307427 kcal Electronic energy + Delta-G solvation = -25311.824173 eV Core-core repulsion = 21934.526082 eV Total energy + Delta-G solvation = -3377.298091 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88583 -38.68431 -37.39892 -34.39233 -32.40364 -31.90638 -31.04942 -29.78362 -27.81062 -27.58225 -25.97776 -25.40651 -22.96682 -22.18995 -20.68008 -20.20705 -18.65625 -17.68163 -17.33297 -16.64083 -15.96701 -15.54774 -15.19153 -14.90692 -14.78688 -14.69348 -14.30973 -13.86620 -13.65323 -13.37023 -13.13686 -12.86707 -12.64909 -12.34998 -12.12466 -12.08583 -12.01640 -11.60320 -11.57140 -11.27727 -11.23133 -11.02400 -11.01612 -10.86549 -10.74252 -10.66467 -10.44591 -9.78116 -9.26469 -9.03547 -8.86354 -8.58684 -8.29609 -8.19122 -6.46489 -6.19044 -3.89000 1.39304 1.45478 3.01364 3.13287 3.24598 3.27829 3.30783 3.66929 3.81467 4.23179 4.33350 4.43396 4.62396 4.85780 4.96167 5.01403 5.06725 5.15846 5.16347 5.26249 5.31722 5.34701 5.38477 5.40696 5.45362 5.54001 5.58435 5.67425 5.69586 5.72256 5.78502 5.85587 5.96039 5.99181 6.05942 6.09935 6.13197 6.17901 6.21301 6.49772 6.61798 6.68261 6.80553 7.05547 7.61489 7.65790 8.37642 8.65411 9.26162 10.88327 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.003929 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.695495 B = 7124.379806 C = 8029.818784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.607 5.607 3 C 0.536 3.464 4 O -0.522 6.522 5 C -0.147 4.147 6 S -0.062 6.062 7 C -0.534 4.534 8 H 0.071 0.929 9 C 0.074 3.926 10 N -0.868 5.868 11 Si 0.917 3.083 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.146 3.854 16 H 0.104 0.896 17 C -0.134 4.134 18 C -0.122 4.122 19 C -0.128 4.128 20 C -0.068 4.068 21 H 0.087 0.913 22 C -0.057 4.057 23 C -0.104 4.104 24 C -0.111 4.111 25 C -0.126 4.126 26 C -0.123 4.123 27 C -0.133 4.133 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.268 0.732 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.827 -21.507 3.564 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.341 5.341 3 C 0.325 3.675 4 O -0.396 6.396 5 C -0.298 4.298 6 S 0.165 5.835 7 C -0.682 4.682 8 H 0.089 0.911 9 C -0.135 4.135 10 N -0.503 5.503 11 Si 0.743 3.257 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.200 1.200 15 C 0.042 3.958 16 H 0.122 0.878 17 C -0.172 4.172 18 C -0.160 4.160 19 C -0.165 4.165 20 C -0.088 4.088 21 H 0.105 0.895 22 C -0.058 4.058 23 C -0.123 4.123 24 C -0.129 4.129 25 C -0.144 4.144 26 C -0.141 4.141 27 C -0.150 4.150 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.877 -21.344 3.559 22.705 hybrid contribution -2.279 1.117 0.024 2.538 sum -9.156 -20.227 3.583 22.490 Atomic orbital electron populations 1.22027 0.80154 1.03667 1.01040 1.47766 1.06477 1.05056 1.74833 1.20270 0.87847 0.84594 0.74829 1.90673 1.13731 1.86807 1.48436 1.23529 1.04420 0.97324 1.04499 1.85340 1.08133 0.93319 1.96689 1.22816 0.94266 0.92268 1.58869 0.91115 1.24969 0.95620 0.98297 0.94586 1.70008 1.11723 1.21689 1.46927 0.86256 0.80252 0.80391 0.78799 1.19959 1.20815 1.19952 1.21652 0.98335 0.82966 0.92859 0.87765 1.22738 1.02115 0.94429 0.97928 1.22444 1.01634 0.96478 0.95449 1.22681 1.01202 0.96130 0.96479 1.21213 0.98351 0.94158 0.95067 0.89463 1.19554 0.94112 0.95659 0.96449 1.21058 1.00269 0.94659 0.96268 1.21207 0.93852 0.99411 0.98455 1.21117 0.95749 0.97283 1.00263 1.21049 0.99352 0.95917 0.97821 1.21125 0.93473 1.00506 0.99935 0.93492 0.89980 0.91314 0.89632 0.89454 0.92183 0.90810 0.91031 0.91208 0.91315 0.91357 0.90330 0.86293 0.86013 0.86451 0.86500 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 7.01 59.84 0.42 1.31 16 2 N -0.61 -8.75 1.62 -172.65 -0.28 -9.03 16 3 C 0.54 10.35 7.02 -10.98 -0.08 10.27 16 4 O -0.52 -11.91 15.23 5.56 0.08 -11.83 16 5 C -0.15 -3.10 4.78 36.01 0.17 -2.93 16 6 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 7 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 10 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 11 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 15 C 0.15 1.80 3.23 -66.81 -0.22 1.59 16 16 H 0.10 1.52 6.98 -51.93 -0.36 1.16 16 17 C -0.13 -1.29 6.39 -25.07 -0.16 -1.45 16 18 C -0.12 -0.91 6.91 -24.74 -0.17 -1.09 16 19 C -0.13 -0.99 6.11 -25.07 -0.15 -1.15 16 20 C -0.07 -0.72 3.04 -90.65 -0.28 -0.99 16 21 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 22 C -0.06 -0.66 3.01 -104.62 -0.32 -0.97 16 23 C -0.10 -1.43 8.26 -39.58 -0.33 -1.75 16 24 C -0.11 -1.46 10.05 -39.58 -0.40 -1.85 16 25 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 26 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 27 C -0.13 -1.30 6.29 -39.58 -0.25 -1.55 16 28 H 0.05 0.52 8.07 -51.93 -0.42 0.10 16 29 H 0.08 0.82 4.43 -51.93 -0.23 0.59 16 30 H 0.07 0.90 6.69 -51.93 -0.35 0.55 16 31 H 0.09 1.72 8.10 -51.91 -0.42 1.30 16 32 H 0.09 1.76 7.42 -51.92 -0.39 1.37 16 33 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.07 0.70 6.69 -51.93 -0.35 0.35 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.56 4.91 -51.93 -0.26 0.30 16 40 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 42 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.13 0.98 5.26 -52.49 -0.28 0.71 16 LS Contribution 356.32 15.07 5.37 5.37 Total: -1.00 -33.39 356.32 -10.07 -43.45 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.39 Total: 2.03 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -2.35 Total: -17.04 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.45 Total: -34.64 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.39 -10.07 -43.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297198514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.762 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds