Wall clock time and date at job start Tue Mar 31 2020 12:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34774 * 120.00320 * 2 1 4 4 O 1.21281 * 120.00573 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.99667 * 359.72486 * 3 2 1 6 6 S 1.81003 * 109.47242 * 180.27399 * 5 3 2 7 7 C 1.76201 * 99.99969 * 179.97438 * 6 5 3 8 8 H 1.08001 * 120.00157 * 0.02562 * 7 6 5 9 9 C 1.38801 * 119.99966 * 180.02562 * 7 6 5 10 10 N 1.31629 * 119.99910 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00121 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47155 * 60.00118 * 11 9 7 13 13 H 1.48499 * 109.47307 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46776 * 299.99978 * 11 9 7 15 15 C 1.46500 * 120.00074 * 180.02562 * 2 1 3 16 16 H 1.09003 * 110.01686 * 172.53874 * 15 2 1 17 17 C 1.54269 * 110.03480 * 51.09286 * 15 2 1 18 18 C 1.54888 * 104.19634 * 217.10559 * 17 15 2 19 19 C 1.54891 * 102.74761 * 37.94377 * 18 17 15 20 20 C 1.53874 * 110.03205 * 293.92517 * 15 2 1 21 21 H 1.08996 * 110.03503 * 238.57264 * 20 15 2 22 22 C 1.50703 * 110.03114 * 359.95444 * 20 15 2 23 23 C 1.38239 * 119.99672 * 284.53129 * 22 20 15 24 24 C 1.38233 * 119.99825 * 179.76651 * 23 22 20 25 25 C 1.38235 * 119.99863 * 0.50746 * 24 23 22 26 26 C 1.38234 * 120.00267 * 359.74262 * 25 24 23 27 27 C 1.38235 * 120.00154 * 104.80527 * 22 20 15 28 28 H 1.08999 * 109.47104 * 84.32973 * 1 2 3 29 29 H 1.09002 * 109.47058 * 204.32557 * 1 2 3 30 30 H 1.09000 * 109.47134 * 324.32830 * 1 2 3 31 31 H 1.09004 * 109.47020 * 300.27182 * 5 3 2 32 32 H 1.08997 * 109.47331 * 60.27128 * 5 3 2 33 33 H 0.97001 * 120.00409 * 179.97438 * 10 9 7 34 34 H 1.09003 * 110.48288 * 335.78337 * 17 15 2 35 35 H 1.08998 * 110.48646 * 98.42735 * 17 15 2 36 36 H 1.08997 * 110.75752 * 279.62969 * 18 17 15 37 37 H 1.09000 * 110.75210 * 156.25488 * 18 17 15 38 38 H 1.09002 * 110.48598 * 203.37701 * 19 18 17 39 39 H 1.09004 * 110.60088 * 80.79169 * 19 18 17 40 40 H 1.07999 * 119.99977 * 359.97438 * 23 22 20 41 41 H 1.08003 * 120.00446 * 180.22622 * 24 23 22 42 42 H 1.08000 * 120.00013 * 179.72504 * 25 24 23 43 43 H 1.08002 * 120.00482 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.00091 * 359.97438 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0063 6 16 2.5616 3.8480 -0.0128 7 6 1.4415 5.2082 -0.0202 8 1 0.3762 5.0305 -0.0192 9 6 1.9282 6.5080 -0.0271 10 7 3.2265 6.7246 -0.0278 11 14 0.7407 7.9500 -0.0342 12 1 -0.1138 7.8934 1.1790 13 1 1.5068 9.2221 -0.0405 14 1 -0.1147 7.8807 -1.2460 15 6 2.1975 -1.2687 -0.0006 16 1 3.2635 -1.0840 -0.1335 17 6 1.6734 -2.1811 -1.1288 18 6 1.7196 -3.6041 -0.5189 19 6 1.2893 -3.3609 0.9490 20 6 1.9533 -2.0189 1.3205 21 1 2.9008 -2.1990 1.8283 22 6 1.0368 -1.2166 2.2080 23 6 1.5186 -0.1057 2.8749 24 6 0.6768 0.6330 3.6851 25 6 -0.6441 0.2548 3.8367 26 6 -1.1246 -0.8591 3.1739 27 6 -0.2841 -1.5949 2.3596 28 1 -0.3633 0.1015 -1.0226 29 1 -0.3633 -0.9364 0.4233 30 1 -0.3633 0.8348 0.5993 31 1 0.7588 2.5258 -0.8966 32 1 0.7587 2.5343 0.8834 33 1 3.5668 7.6330 -0.0330 34 1 0.6506 -1.9121 -1.3927 35 1 2.3227 -2.1191 -2.0021 36 1 2.7300 -4.0106 -0.5630 37 1 1.0141 -4.2638 -1.0240 38 1 1.6582 -4.1600 1.5920 39 1 0.2045 -3.2833 1.0229 40 1 2.5519 0.1869 2.7602 41 1 1.0522 1.5031 4.2033 42 1 -1.3007 0.8293 4.4732 43 1 -2.1565 -1.1549 3.2926 44 1 -0.6595 -2.4651 1.8417 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297198514.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:21 Heat of formation + Delta-G solvation = -17.714750 kcal Electronic energy + Delta-G solvation = -25312.605673 eV Core-core repulsion = 21934.526082 eV Total energy + Delta-G solvation = -3378.079591 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.93016 -39.95902 -38.38909 -35.63017 -34.60407 -32.74997 -31.96301 -31.22226 -28.86085 -28.49543 -27.69385 -26.99417 -23.82008 -23.11331 -21.73414 -21.12509 -19.95451 -19.50357 -18.43259 -17.92004 -17.10353 -16.90120 -16.74631 -16.33184 -16.01777 -15.78973 -15.49048 -15.15917 -14.75458 -14.53780 -14.41619 -14.13010 -14.02158 -13.62666 -13.42274 -13.17908 -13.05122 -12.95251 -12.89039 -12.65456 -12.57577 -12.38356 -12.14828 -11.92011 -11.75162 -11.65443 -11.52231 -11.16289 -11.14691 -10.84148 -10.30232 -9.86035 -9.58415 -9.36101 -8.69415 -8.36056 -6.14765 0.48862 0.53781 1.24055 1.41943 1.43940 1.54046 1.59196 2.13683 2.26189 2.89862 2.97741 3.25289 3.52354 3.62975 3.78719 3.86276 4.06635 4.13054 4.16256 4.22168 4.28383 4.32193 4.43189 4.44682 4.52505 4.58139 4.58660 4.62571 4.70884 4.73157 4.86563 4.92157 5.05635 5.12306 5.18901 5.19636 5.28829 5.29608 5.38742 5.49663 5.60623 5.68205 5.71140 5.78032 6.16840 6.17496 6.31100 7.04593 7.17638 8.73065 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.003929 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.695495 B = 7124.379806 C = 8029.818784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.589 5.589 3 C 0.534 3.466 4 O -0.570 6.570 5 C -0.118 4.118 6 S -0.148 6.148 7 C -0.547 4.547 8 H 0.079 0.921 9 C 0.016 3.984 10 N -0.911 5.911 11 Si 0.997 3.003 12 H -0.262 1.262 13 H -0.277 1.277 14 H -0.261 1.261 15 C 0.138 3.862 16 H 0.070 0.930 17 C -0.128 4.128 18 C -0.113 4.113 19 C -0.118 4.118 20 C -0.067 4.067 21 H 0.074 0.926 22 C -0.061 4.061 23 C -0.129 4.129 24 C -0.134 4.134 25 C -0.130 4.130 26 C -0.114 4.114 27 C -0.124 4.124 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.271 0.729 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.132 0.868 43 H 0.152 0.848 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 -23.870 3.188 27.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.321 5.321 3 C 0.322 3.678 4 O -0.449 6.449 5 C -0.270 4.270 6 S 0.079 5.921 7 C -0.695 4.695 8 H 0.097 0.903 9 C -0.189 4.189 10 N -0.547 5.547 11 Si 0.819 3.181 12 H -0.187 1.187 13 H -0.202 1.202 14 H -0.186 1.186 15 C 0.035 3.965 16 H 0.088 0.912 17 C -0.167 4.167 18 C -0.151 4.151 19 C -0.154 4.154 20 C -0.086 4.086 21 H 0.093 0.907 22 C -0.061 4.061 23 C -0.148 4.148 24 C -0.152 4.152 25 C -0.148 4.148 26 C -0.132 4.132 27 C -0.141 4.141 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.124 0.876 42 H 0.150 0.850 43 H 0.169 0.831 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.174 -23.760 3.185 26.449 hybrid contribution -0.953 1.737 0.186 1.990 sum -12.127 -22.023 3.371 25.366 Atomic orbital electron populations 1.22290 0.78000 1.04847 1.02316 1.47709 1.07728 1.04235 1.72434 1.20004 0.87176 0.85455 0.75144 1.90653 1.15614 1.87443 1.51191 1.23308 1.02612 0.95598 1.05434 1.85519 1.12498 0.97067 1.96981 1.23133 0.94480 0.92725 1.59125 0.90262 1.26116 0.97602 1.01579 0.93620 1.70178 1.14131 1.22543 1.47889 0.85024 0.77649 0.75911 0.79550 1.18656 1.20204 1.18559 1.21868 0.96568 0.82462 0.95641 0.91211 1.22723 1.02284 0.95187 0.96473 1.22436 1.02545 0.95036 0.95090 1.22673 1.01860 0.94158 0.96753 1.21191 0.98301 0.95591 0.93545 0.90742 1.19648 0.95316 0.94860 0.96280 1.20903 0.98825 0.96633 0.98394 1.21218 0.95226 0.99507 0.99231 1.21341 0.94735 0.98146 1.00606 1.21452 1.00877 0.94576 0.96266 1.21472 0.92153 1.01083 0.99433 0.91655 0.87147 0.92253 0.88233 0.88583 0.91956 0.89588 0.91725 0.91191 0.88755 0.89949 0.88517 0.90039 0.87602 0.84958 0.83077 0.82063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 7.01 127.77 0.90 2.34 16 2 N -0.59 -16.92 1.62 -818.54 -1.32 -18.24 16 3 C 0.53 21.60 7.02 87.66 0.62 22.22 16 4 O -0.57 -28.12 15.23 -3.03 -0.05 -28.17 16 5 C -0.12 -5.14 4.78 71.24 0.34 -4.80 16 6 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 7 C -0.55 -32.17 9.50 67.95 0.65 -31.53 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 9 C 0.02 0.91 5.49 84.86 0.47 1.38 16 10 N -0.91 -57.00 13.22 21.65 0.29 -56.71 16 11 Si 1.00 44.31 29.55 68.60 2.03 46.34 16 12 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 13 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 15 C 0.14 3.40 3.23 45.72 0.15 3.54 16 16 H 0.07 2.21 6.98 -2.39 -0.02 2.19 16 17 C -0.13 -2.19 6.39 31.67 0.20 -1.98 16 18 C -0.11 -1.27 6.91 31.89 0.22 -1.05 16 19 C -0.12 -1.35 6.11 31.67 0.19 -1.15 16 20 C -0.07 -1.33 3.04 -10.81 -0.03 -1.36 16 21 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 22 C -0.06 -1.32 3.01 -19.86 -0.06 -1.38 16 23 C -0.13 -3.73 8.26 22.27 0.18 -3.55 16 24 C -0.13 -3.65 10.05 22.27 0.22 -3.43 16 25 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 26 C -0.11 -1.80 10.05 22.27 0.22 -1.58 16 27 C -0.12 -1.93 6.29 22.27 0.14 -1.79 16 28 H 0.06 1.23 8.07 -2.39 -0.02 1.21 16 29 H 0.11 1.73 4.43 -2.39 -0.01 1.72 16 30 H 0.06 1.43 6.69 -2.39 -0.02 1.41 16 31 H 0.10 4.00 8.10 -2.39 -0.02 3.98 16 32 H 0.10 3.97 7.42 -2.40 -0.02 3.95 16 33 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 34 H 0.09 1.28 6.69 -2.39 -0.02 1.26 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.10 0.77 4.91 -2.38 -0.01 0.76 16 40 H 0.08 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.11 3.07 8.06 -2.91 -0.02 3.04 16 42 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 43 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 44 H 0.16 1.44 5.26 -2.91 -0.02 1.42 16 Total: -1.00 -78.47 356.32 5.41 -73.06 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.99 Total: 20.07 kcal Atomic # 6 Polarization: -31.26 SS G_CDS: 4.63 Total: -26.63 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -1.04 Total: -74.95 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.05 Total: -28.17 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -78.47 5.41 -73.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297198514.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.349 kcal (2) G-P(sol) polarization free energy of solvation -78.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds