Wall clock time and date at job start Tue Mar 31 2020 12:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34784 * 119.99635 * 2 1 4 4 O 1.21283 * 119.99649 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.99988 * 0.02562 * 3 2 1 6 6 S 1.81005 * 109.47244 * 179.97438 * 5 3 2 7 7 C 1.76192 * 100.00090 * 179.97438 * 6 5 3 8 8 H 1.08001 * 120.00308 * 0.02562 * 7 6 5 9 9 C 1.38797 * 119.99747 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00171 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99848 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47396 * 59.99622 * 11 9 7 13 13 H 1.48504 * 109.46972 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46804 * 299.99684 * 11 9 7 15 15 C 1.46493 * 120.00444 * 180.27289 * 2 1 3 16 16 H 1.08997 * 110.02242 * 178.33428 * 15 2 1 17 17 C 1.53876 * 110.02954 * 56.89150 * 15 2 1 18 18 C 1.54266 * 106.60151 * 240.71409 * 17 15 2 19 19 C 1.54894 * 104.19479 * 336.39408 * 18 17 15 20 20 C 1.54270 * 110.03474 * 299.72538 * 15 2 1 21 21 H 1.08999 * 110.48201 * 24.21647 * 20 15 2 22 22 C 1.50697 * 110.48660 * 261.70162 * 20 15 2 23 23 C 1.38229 * 120.00360 * 299.72780 * 22 20 15 24 24 C 1.38235 * 120.00241 * 179.74582 * 23 22 20 25 25 C 1.38238 * 119.99662 * 0.52323 * 24 23 22 26 26 C 1.38233 * 119.99931 * 359.75131 * 25 24 23 27 27 C 1.38232 * 120.00187 * 359.97419 * 26 25 24 28 28 H 1.08995 * 109.47693 * 90.00207 * 1 2 3 29 29 H 1.09003 * 109.47006 * 210.00121 * 1 2 3 30 30 H 1.09004 * 109.47665 * 329.99813 * 1 2 3 31 31 H 1.08998 * 109.47224 * 299.99701 * 5 3 2 32 32 H 1.09002 * 109.47054 * 60.00213 * 5 3 2 33 33 H 0.97000 * 119.99868 * 179.97438 * 10 9 7 34 34 H 1.08995 * 110.03374 * 359.97438 * 17 15 2 35 35 H 1.09001 * 110.03362 * 121.43259 * 17 15 2 36 36 H 1.08994 * 110.48803 * 217.71275 * 18 17 15 37 37 H 1.08998 * 110.59850 * 95.12425 * 18 17 15 38 38 H 1.09002 * 110.75242 * 279.62296 * 19 18 17 39 39 H 1.08996 * 110.75832 * 156.25630 * 19 18 17 40 40 H 1.08001 * 119.99678 * 359.97438 * 23 22 20 41 41 H 1.07996 * 119.99918 * 180.29722 * 24 23 22 42 42 H 1.07996 * 119.99855 * 179.76706 * 25 24 23 43 43 H 1.08002 * 119.99464 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.00176 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3852 2.4723 0.0006 6 16 2.5613 3.8482 0.0012 7 6 1.4412 5.2082 0.0010 8 1 0.3759 5.0305 0.0011 9 6 1.9279 6.5081 0.0009 10 7 3.2262 6.7247 0.0013 11 14 0.7403 7.9501 0.0014 12 1 -0.1143 7.8871 1.2142 13 1 1.5064 9.2222 0.0017 14 1 -0.1152 7.8871 -1.2108 15 6 2.1975 -1.2686 -0.0060 16 1 3.2706 -1.0797 -0.0349 17 6 1.7772 -2.1141 -1.2210 18 6 1.1784 -3.4215 -0.6624 19 6 1.8087 -3.5564 0.7461 20 6 1.8395 -2.0916 1.2487 21 1 0.8615 -1.7988 1.6306 22 6 2.8932 -1.9179 2.3118 23 6 4.2005 -2.2874 2.0563 24 6 5.1681 -2.1231 3.0297 25 6 4.8263 -1.5993 4.2625 26 6 3.5179 -1.2351 4.5200 27 6 2.5514 -1.3941 3.5446 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 0.7583 2.5302 -0.8891 32 1 0.7589 2.5298 0.8909 33 1 3.5663 7.6332 0.0008 34 1 1.0279 -1.5807 -1.8059 35 1 2.6465 -2.3363 -1.8400 36 1 1.4594 -4.2680 -1.2888 37 1 0.0935 -3.3458 -0.5891 38 1 2.8177 -3.9635 0.6803 39 1 1.1835 -4.1733 1.3916 40 1 4.4665 -2.7010 1.0947 41 1 6.1904 -2.4073 2.8283 42 1 5.5816 -1.4745 5.0243 43 1 3.2509 -0.8263 5.4834 44 1 1.5293 -1.1092 3.7457 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297198516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:24 Heat of formation + Delta-G solvation = -19.127709 kcal Electronic energy + Delta-G solvation = -24491.147531 eV Core-core repulsion = 21113.006669 eV Total energy + Delta-G solvation = -3378.140862 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.42714 -38.94419 -37.42324 -34.46392 -32.40884 -31.91918 -30.86479 -29.84323 -27.91360 -27.45623 -26.15181 -25.41922 -22.86258 -22.22838 -20.85653 -20.08494 -18.82515 -17.71229 -17.13449 -16.71253 -16.02094 -15.45629 -15.36944 -14.82553 -14.78710 -14.54623 -14.24035 -13.82530 -13.56959 -13.31561 -13.06717 -12.89205 -12.87427 -12.64205 -12.30373 -12.17849 -11.93319 -11.85829 -11.47492 -11.32560 -11.19126 -11.02677 -11.02237 -10.81532 -10.75107 -10.72602 -10.63589 -9.78917 -9.27839 -9.03996 -8.86172 -8.80259 -8.29551 -8.19462 -6.47223 -6.19340 -3.89680 1.38996 1.45373 2.97943 3.11579 3.24436 3.27196 3.30315 3.63960 3.78540 4.22481 4.37311 4.47635 4.63304 4.90356 4.97513 4.99508 5.02580 5.12529 5.14551 5.15564 5.26552 5.30666 5.32019 5.39774 5.43823 5.50079 5.53901 5.61919 5.65629 5.70260 5.74020 5.80310 5.92892 5.96828 6.03678 6.09722 6.10178 6.16287 6.18335 6.50195 6.55372 6.62513 6.79231 7.04426 7.60079 7.62037 8.36898 8.63397 9.25637 10.88023 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.003460 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.155054 B = 8091.218075 C = 9173.613125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.617 5.617 3 C 0.533 3.467 4 O -0.514 6.514 5 C -0.149 4.149 6 S -0.061 6.061 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.074 3.926 10 N -0.868 5.868 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.145 3.855 16 H 0.106 0.894 17 C -0.136 4.136 18 C -0.122 4.122 19 C -0.114 4.114 20 C -0.065 4.065 21 H 0.087 0.913 22 C -0.067 4.067 23 C -0.112 4.112 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.117 4.117 27 C -0.114 4.114 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.269 0.731 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.907 -22.856 3.560 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.352 5.352 3 C 0.321 3.679 4 O -0.388 6.388 5 C -0.299 4.299 6 S 0.166 5.834 7 C -0.684 4.684 8 H 0.089 0.911 9 C -0.135 4.135 10 N -0.503 5.503 11 Si 0.744 3.256 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.199 1.199 15 C 0.041 3.959 16 H 0.124 0.876 17 C -0.175 4.175 18 C -0.160 4.160 19 C -0.152 4.152 20 C -0.085 4.085 21 H 0.105 0.895 22 C -0.067 4.067 23 C -0.130 4.130 24 C -0.135 4.135 25 C -0.143 4.143 26 C -0.135 4.135 27 C -0.132 4.132 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.957 -22.693 3.553 23.159 hybrid contribution -2.270 1.090 0.025 2.518 sum -5.227 -21.603 3.578 22.512 Atomic orbital electron populations 1.21715 0.80153 1.02976 1.01668 1.47900 1.06497 1.05337 1.75492 1.20336 0.87976 0.84563 0.75005 1.90687 1.13729 1.86687 1.47672 1.23549 1.04499 0.97338 1.04559 1.85404 1.08062 0.93284 1.96686 1.22821 0.94274 0.92280 1.58999 0.91057 1.24979 0.95639 0.98323 0.94557 1.70011 1.11748 1.21713 1.46822 0.86243 0.80223 0.80359 0.78786 1.19953 1.20807 1.19943 1.21783 0.98716 0.82684 0.92709 0.87569 1.22537 1.01500 0.95836 0.97625 1.22347 1.00091 0.97380 0.96190 1.22575 1.01535 0.95012 0.96086 1.21393 0.97669 0.95666 0.93743 0.89488 1.19673 0.94325 0.98338 0.94410 1.20932 0.92624 1.00391 0.99076 1.21100 0.99126 0.99549 0.93690 1.21114 0.96359 0.99604 0.97251 1.21110 0.93377 0.99755 0.99277 1.21013 0.99440 0.99518 0.93250 0.92796 0.91366 0.90696 0.89388 0.89403 0.92157 0.90847 0.91021 0.91414 0.91532 0.90849 0.91212 0.86269 0.86238 0.86328 0.86249 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 9.11 59.84 0.55 1.38 16 2 N -0.62 -8.92 2.76 -172.66 -0.48 -9.39 16 3 C 0.53 10.45 7.69 -10.98 -0.08 10.37 16 4 O -0.51 -12.09 15.21 5.56 0.08 -12.01 16 5 C -0.15 -3.10 4.71 36.00 0.17 -2.94 16 6 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 7 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 10 N -0.87 -26.42 13.22 55.49 0.73 -25.69 16 11 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 15 C 0.15 1.84 2.80 -66.81 -0.19 1.65 16 16 H 0.11 1.66 5.90 -51.93 -0.31 1.35 16 17 C -0.14 -1.36 6.28 -25.61 -0.16 -1.52 16 18 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16 19 C -0.11 -0.94 6.27 -24.74 -0.16 -1.09 16 20 C -0.07 -0.69 2.59 -90.11 -0.23 -0.93 16 21 H 0.09 0.88 6.13 -51.93 -0.32 0.57 16 22 C -0.07 -0.84 4.90 -104.63 -0.51 -1.35 16 23 C -0.11 -1.38 8.17 -39.59 -0.32 -1.70 16 24 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 25 C -0.13 -1.49 10.05 -39.58 -0.40 -1.88 16 26 C -0.12 -1.43 10.05 -39.59 -0.40 -1.82 16 27 C -0.11 -1.44 9.68 -39.58 -0.38 -1.82 16 28 H 0.05 0.52 7.83 -51.93 -0.41 0.11 16 29 H 0.07 0.57 6.47 -51.93 -0.34 0.24 16 30 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 31 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 32 H 0.09 1.70 7.40 -51.91 -0.38 1.32 16 33 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.07 0.74 7.07 -51.93 -0.37 0.38 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.60 6.80 -51.93 -0.35 0.25 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.12 1.29 7.28 -52.49 -0.38 0.91 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 44 H 0.12 1.31 7.97 -52.48 -0.42 0.89 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -34.76 367.06 -10.39 -45.14 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.53 Total: 1.42 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.49 Total: -17.62 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.26 Total: -35.08 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.08 Total: -12.01 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.76 -10.39 -45.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297198516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.016 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds