Wall clock time and date at job start Tue Mar 31 2020 12:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34784 * 119.99635 * 2 1 4 4 O 1.21283 * 119.99649 * 180.02562 * 3 2 1 5 5 C 1.50694 * 119.99988 * 0.02562 * 3 2 1 6 6 S 1.81005 * 109.47244 * 179.97438 * 5 3 2 7 7 C 1.76192 * 100.00090 * 179.97438 * 6 5 3 8 8 H 1.08001 * 120.00308 * 0.02562 * 7 6 5 9 9 C 1.38797 * 119.99747 * 180.02562 * 7 6 5 10 10 N 1.31628 * 120.00171 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 119.99848 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47396 * 59.99622 * 11 9 7 13 13 H 1.48504 * 109.46972 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46804 * 299.99684 * 11 9 7 15 15 C 1.46493 * 120.00444 * 180.27289 * 2 1 3 16 16 H 1.08997 * 110.02242 * 178.33428 * 15 2 1 17 17 C 1.53876 * 110.02954 * 56.89150 * 15 2 1 18 18 C 1.54266 * 106.60151 * 240.71409 * 17 15 2 19 19 C 1.54894 * 104.19479 * 336.39408 * 18 17 15 20 20 C 1.54270 * 110.03474 * 299.72538 * 15 2 1 21 21 H 1.08999 * 110.48201 * 24.21647 * 20 15 2 22 22 C 1.50697 * 110.48660 * 261.70162 * 20 15 2 23 23 C 1.38229 * 120.00360 * 299.72780 * 22 20 15 24 24 C 1.38235 * 120.00241 * 179.74582 * 23 22 20 25 25 C 1.38238 * 119.99662 * 0.52323 * 24 23 22 26 26 C 1.38233 * 119.99931 * 359.75131 * 25 24 23 27 27 C 1.38232 * 120.00187 * 359.97419 * 26 25 24 28 28 H 1.08995 * 109.47693 * 90.00207 * 1 2 3 29 29 H 1.09003 * 109.47006 * 210.00121 * 1 2 3 30 30 H 1.09004 * 109.47665 * 329.99813 * 1 2 3 31 31 H 1.08998 * 109.47224 * 299.99701 * 5 3 2 32 32 H 1.09002 * 109.47054 * 60.00213 * 5 3 2 33 33 H 0.97000 * 119.99868 * 179.97438 * 10 9 7 34 34 H 1.08995 * 110.03374 * 359.97438 * 17 15 2 35 35 H 1.09001 * 110.03362 * 121.43259 * 17 15 2 36 36 H 1.08994 * 110.48803 * 217.71275 * 18 17 15 37 37 H 1.08998 * 110.59850 * 95.12425 * 18 17 15 38 38 H 1.09002 * 110.75242 * 279.62296 * 19 18 17 39 39 H 1.08996 * 110.75832 * 156.25630 * 19 18 17 40 40 H 1.08001 * 119.99678 * 359.97438 * 23 22 20 41 41 H 1.07996 * 119.99918 * 180.29722 * 24 23 22 42 42 H 1.07996 * 119.99855 * 179.76706 * 25 24 23 43 43 H 1.08002 * 119.99464 * 179.97438 * 26 25 24 44 44 H 1.08004 * 120.00176 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3852 2.4723 0.0006 6 16 2.5613 3.8482 0.0012 7 6 1.4412 5.2082 0.0010 8 1 0.3759 5.0305 0.0011 9 6 1.9279 6.5081 0.0009 10 7 3.2262 6.7247 0.0013 11 14 0.7403 7.9501 0.0014 12 1 -0.1143 7.8871 1.2142 13 1 1.5064 9.2222 0.0017 14 1 -0.1152 7.8871 -1.2108 15 6 2.1975 -1.2686 -0.0060 16 1 3.2706 -1.0797 -0.0349 17 6 1.7772 -2.1141 -1.2210 18 6 1.1784 -3.4215 -0.6624 19 6 1.8087 -3.5564 0.7461 20 6 1.8395 -2.0916 1.2487 21 1 0.8615 -1.7988 1.6306 22 6 2.8932 -1.9179 2.3118 23 6 4.2005 -2.2874 2.0563 24 6 5.1681 -2.1231 3.0297 25 6 4.8263 -1.5993 4.2625 26 6 3.5179 -1.2351 4.5200 27 6 2.5514 -1.3941 3.5446 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 0.7583 2.5302 -0.8891 32 1 0.7589 2.5298 0.8909 33 1 3.5663 7.6332 0.0008 34 1 1.0279 -1.5807 -1.8059 35 1 2.6465 -2.3363 -1.8400 36 1 1.4594 -4.2680 -1.2888 37 1 0.0935 -3.3458 -0.5891 38 1 2.8177 -3.9635 0.6803 39 1 1.1835 -4.1733 1.3916 40 1 4.4665 -2.7010 1.0947 41 1 6.1904 -2.4073 2.8283 42 1 5.5816 -1.4745 5.0243 43 1 3.2509 -0.8263 5.4834 44 1 1.5293 -1.1092 3.7457 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297198516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:23 Heat of formation + Delta-G solvation = -38.500358 kcal Electronic energy + Delta-G solvation = -24491.987592 eV Core-core repulsion = 21113.006669 eV Total energy + Delta-G solvation = -3378.980923 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.49988 -40.10786 -38.48376 -35.66426 -34.59038 -32.76634 -31.77776 -31.26346 -28.89345 -28.38426 -27.70526 -27.10867 -23.76869 -23.17617 -21.76386 -21.09768 -20.03567 -19.55292 -18.38156 -17.78288 -17.22293 -16.88373 -16.70959 -16.35997 -16.05675 -15.73041 -15.37315 -15.09115 -14.55027 -14.49900 -14.28572 -14.16766 -13.96714 -13.80577 -13.51932 -13.21342 -13.16221 -12.99304 -12.87707 -12.84911 -12.56407 -12.37069 -12.10432 -11.95226 -11.73794 -11.67096 -11.55303 -11.37527 -11.13273 -10.83155 -10.27431 -9.85842 -9.80008 -9.35091 -8.68153 -8.34696 -6.13540 0.46140 0.51298 1.25446 1.43494 1.45568 1.55373 1.59813 2.13059 2.27477 2.85599 2.99241 3.26756 3.54374 3.64119 3.79757 3.88946 4.06116 4.13285 4.19582 4.19760 4.27463 4.29848 4.40284 4.43947 4.51033 4.55244 4.58555 4.64432 4.69078 4.72713 4.83004 4.91036 5.05152 5.10987 5.15262 5.19207 5.24877 5.29180 5.40441 5.44417 5.58111 5.62821 5.64033 5.76964 6.14348 6.18898 6.31273 7.06040 7.18126 8.74411 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.003460 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.155054 B = 8091.218075 C = 9173.613125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.602 5.602 3 C 0.529 3.471 4 O -0.566 6.566 5 C -0.121 4.121 6 S -0.154 6.154 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.014 3.986 10 N -0.912 5.912 11 Si 0.999 3.001 12 H -0.261 1.261 13 H -0.279 1.279 14 H -0.261 1.261 15 C 0.140 3.860 16 H 0.070 0.930 17 C -0.132 4.132 18 C -0.111 4.111 19 C -0.108 4.108 20 C -0.059 4.059 21 H 0.097 0.903 22 C -0.080 4.080 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.138 4.138 26 C -0.131 4.131 27 C -0.133 4.133 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.271 0.729 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.948 -24.174 3.519 25.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.335 5.335 3 C 0.317 3.683 4 O -0.445 6.445 5 C -0.272 4.272 6 S 0.073 5.927 7 C -0.694 4.694 8 H 0.101 0.899 9 C -0.190 4.190 10 N -0.548 5.548 11 Si 0.820 3.180 12 H -0.186 1.186 13 H -0.204 1.204 14 H -0.185 1.185 15 C 0.036 3.964 16 H 0.088 0.912 17 C -0.171 4.171 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.078 4.078 21 H 0.115 0.885 22 C -0.080 4.080 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.156 4.156 26 C -0.149 4.149 27 C -0.151 4.151 28 H 0.091 0.909 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.144 0.856 41 H 0.153 0.847 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.046 -24.069 3.511 25.064 hybrid contribution -1.316 1.374 0.046 1.903 sum -7.362 -22.695 3.556 24.122 Atomic orbital electron populations 1.22060 0.77348 1.04608 1.03418 1.47906 1.08182 1.04336 1.73064 1.20163 0.87320 0.85577 0.75268 1.90670 1.15771 1.87414 1.50605 1.23359 1.02633 0.95109 1.06119 1.85611 1.12741 0.97319 1.97021 1.23157 0.94584 0.92649 1.59049 0.89945 1.26134 0.97590 1.01663 0.93651 1.70186 1.14194 1.22512 1.47939 0.85006 0.77604 0.75841 0.79558 1.18602 1.20371 1.18545 1.21942 0.96758 0.82257 0.95426 0.91152 1.22504 1.01614 0.96668 0.96284 1.22322 1.00835 0.96218 0.95501 1.22564 1.01998 0.93270 0.96739 1.21386 0.97342 0.96936 0.92116 0.88480 1.19964 0.94923 0.98190 0.94969 1.21168 0.93024 1.00765 0.99559 1.21425 1.00042 0.99527 0.93853 1.21431 0.96914 0.99474 0.97795 1.21427 0.93613 0.99784 1.00082 1.21291 1.00223 0.99914 0.93631 0.90925 0.88184 0.90733 0.87600 0.87703 0.91999 0.90588 0.91399 0.89889 0.89798 0.91109 0.89507 0.85568 0.84664 0.84527 0.84711 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.23 9.11 127.77 1.16 2.39 16 2 N -0.60 -16.67 2.76 -818.56 -2.26 -18.94 16 3 C 0.53 20.96 7.69 87.65 0.67 21.63 16 4 O -0.57 -27.91 15.21 -3.04 -0.05 -27.96 16 5 C -0.12 -5.04 4.71 71.23 0.34 -4.70 16 6 S -0.15 -8.82 20.57 -56.49 -1.16 -9.99 16 7 C -0.55 -31.71 9.50 67.95 0.65 -31.06 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 9 C 0.01 0.83 5.49 84.86 0.47 1.29 16 10 N -0.91 -56.84 13.22 21.65 0.29 -56.55 16 11 Si 1.00 43.89 29.55 68.60 2.03 45.91 16 12 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 13 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 14 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 15 C 0.14 3.41 2.80 45.72 0.13 3.54 16 16 H 0.07 2.27 5.90 -2.39 -0.01 2.26 16 17 C -0.13 -2.36 6.28 31.32 0.20 -2.16 16 18 C -0.11 -1.28 6.83 31.67 0.22 -1.07 16 19 C -0.11 -1.47 6.27 31.89 0.20 -1.27 16 20 C -0.06 -1.14 2.59 -10.46 -0.03 -1.17 16 21 H 0.10 1.68 6.13 -2.39 -0.01 1.67 16 22 C -0.08 -1.97 4.90 -19.87 -0.10 -2.07 16 23 C -0.13 -3.17 8.17 22.27 0.18 -2.99 16 24 C -0.13 -3.16 10.05 22.27 0.22 -2.94 16 25 C -0.14 -3.29 10.05 22.27 0.22 -3.06 16 26 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 27 C -0.13 -3.29 9.68 22.27 0.22 -3.07 16 28 H 0.07 1.13 7.83 -2.39 -0.02 1.11 16 29 H 0.10 1.24 6.47 -2.39 -0.02 1.22 16 30 H 0.07 1.41 6.44 -2.38 -0.02 1.39 16 31 H 0.11 3.99 8.11 -2.40 -0.02 3.97 16 32 H 0.10 3.97 7.40 -2.39 -0.02 3.95 16 33 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 34 H 0.08 1.33 7.07 -2.39 -0.02 1.31 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 1.02 6.80 -2.39 -0.02 1.00 16 39 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 40 H 0.13 2.81 7.28 -2.91 -0.02 2.79 16 41 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 42 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 43 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16 44 H 0.13 2.74 7.97 -2.91 -0.02 2.72 16 Total: -1.00 -79.25 367.06 4.80 -74.45 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.99 Total: 22.72 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 4.97 Total: -29.65 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -1.98 Total: -75.48 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.05 Total: -27.96 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.99 kcal Total: -79.25 4.80 -74.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297198516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.946 kcal (2) G-P(sol) polarization free energy of solvation -79.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds