Wall clock time and date at job start Tue Mar 31 2020 12:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76204 * 102.99693 * 2 1 4 4 C 1.38992 * 120.08417 * 0.30113 * 3 2 1 5 5 C 1.38055 * 119.92112 * 180.29934 * 4 3 2 6 6 C 1.38329 * 120.08231 * 359.69527 * 5 4 3 7 7 C 1.38281 * 120.15599 * 359.97438 * 6 5 4 8 8 C 1.38100 * 120.08348 * 0.04229 * 7 6 5 9 9 C 1.50703 * 120.04312 * 179.97438 * 8 7 6 10 10 C 1.50694 * 109.47003 * 264.99941 * 9 8 7 11 11 O 1.21290 * 120.00281 * 0.02562 * 10 9 8 12 12 N 1.34783 * 120.00065 * 180.27101 * 10 9 8 13 13 C 1.37101 * 119.99589 * 359.73215 * 12 10 9 14 14 H 1.07994 * 120.00087 * 128.05174 * 13 12 10 15 15 C 1.38949 * 119.99576 * 308.04381 * 13 12 10 16 16 N 1.31406 * 120.00537 * 336.85535 * 15 13 12 17 17 Si 1.86808 * 119.99350 * 156.85834 * 15 13 12 18 18 H 1.48489 * 109.47454 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.46778 * 120.00153 * 17 15 13 20 20 H 1.48501 * 109.46806 * 239.99736 * 17 15 13 21 21 C 1.46503 * 120.00174 * 179.72491 * 12 10 9 22 22 C 1.54262 * 110.03144 * 242.40511 * 21 12 10 23 23 C 1.54963 * 104.15699 * 217.13851 * 22 21 12 24 24 C 1.54891 * 102.77989 * 37.88656 * 23 22 21 25 25 C 1.53869 * 110.02779 * 125.18676 * 21 12 10 26 26 H 1.09003 * 109.47419 * 299.99299 * 1 2 3 27 27 H 1.08995 * 109.47473 * 59.99681 * 1 2 3 28 28 H 1.08996 * 109.47385 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.04139 * 359.97310 * 4 3 2 30 30 H 1.07998 * 119.96509 * 179.72150 * 5 4 3 31 31 H 1.07996 * 119.92455 * 180.02562 * 6 5 4 32 32 H 1.07997 * 119.95770 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47035 * 144.99856 * 9 8 7 34 34 H 1.08996 * 109.46686 * 25.00300 * 9 8 7 35 35 H 0.97003 * 120.00130 * 175.31031 * 16 15 13 36 36 H 1.09001 * 110.01315 * 3.79640 * 21 12 10 37 37 H 1.09004 * 110.48694 * 335.77684 * 22 21 12 38 38 H 1.08993 * 110.48849 * 98.43085 * 22 21 12 39 39 H 1.09000 * 110.72186 * 279.57331 * 23 22 21 40 40 H 1.09008 * 110.92383 * 156.29625 * 23 22 21 41 41 H 1.08995 * 110.48646 * 203.40501 * 24 23 22 42 42 H 1.09005 * 110.59682 * 80.81897 * 24 23 22 43 43 H 1.09008 * 110.03297 * 238.57078 * 25 21 12 44 44 H 1.09000 * 110.03880 * 359.95192 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 1.1951 2.6663 0.0063 5 6 1.5093 4.0105 0.0000 6 6 2.8327 4.4132 -0.0061 7 6 3.8454 3.4715 -0.0055 8 6 3.5385 2.1251 0.0004 9 6 4.6429 1.0996 0.0004 10 6 4.9220 0.6619 -1.4143 11 8 4.2870 1.1363 -2.3324 12 7 5.8738 -0.2604 -1.6590 13 6 6.5919 -0.7964 -0.6213 14 1 6.6696 -1.8683 -0.5153 15 6 7.2196 0.0397 0.2939 16 7 7.5248 1.2724 -0.0439 17 14 7.6298 -0.5888 2.0046 18 1 7.1851 -1.9997 2.1334 19 1 9.0966 -0.5097 2.2224 20 1 6.9333 0.2438 3.0180 21 6 6.1410 -0.6904 -3.0338 22 6 5.8408 -2.1960 -3.1844 23 6 6.9412 -2.7074 -4.1481 24 6 8.1873 -1.9018 -3.7037 25 6 7.6322 -0.5032 -3.3641 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.1616 2.3527 0.0108 30 1 0.7211 4.7488 0.0004 31 1 3.0757 5.4655 -0.0106 32 1 4.8775 3.7895 -0.0100 33 1 4.3382 0.2377 0.5940 34 1 5.5442 1.5365 0.4302 35 1 7.9007 1.8769 0.6151 36 1 5.5294 -0.1162 -3.7298 37 1 5.9153 -2.6982 -2.2198 38 1 4.8524 -2.3463 -3.6186 39 1 6.6836 -2.4807 -5.1827 40 1 7.1062 -3.7771 -4.0181 41 1 8.9104 -1.8383 -4.5167 42 1 8.6432 -2.3554 -2.8235 43 1 7.7443 0.1612 -4.2210 44 1 8.1569 -0.0917 -2.5018 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346782794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:43 Heat of formation + Delta-G solvation = -14.756342 kcal Electronic energy + Delta-G solvation = -25493.141452 eV Core-core repulsion = 22115.190147 eV Total energy + Delta-G solvation = -3377.951305 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.24739 -38.34226 -36.50264 -34.09404 -32.22579 -31.28417 -30.86798 -28.60582 -27.88517 -27.61859 -26.15839 -24.56400 -22.36659 -21.44915 -20.05758 -19.46528 -19.18470 -17.12690 -16.41674 -15.81379 -15.51308 -15.18136 -14.99138 -14.52700 -14.32074 -14.10398 -13.78193 -13.64515 -13.48289 -13.19200 -12.58434 -12.56721 -12.49978 -12.25328 -11.96156 -11.61045 -11.49101 -11.23472 -10.97411 -10.87954 -10.71077 -10.57643 -10.44435 -10.42255 -10.36683 -10.27739 -9.87667 -9.66096 -9.59145 -9.27974 -8.72552 -8.51640 -8.04340 -7.25777 -6.92456 -6.39958 -4.19507 1.68286 1.82692 1.92712 2.82370 3.11278 3.23379 3.26531 4.06414 4.16122 4.23388 4.86306 4.92688 5.17585 5.19093 5.20715 5.29900 5.39087 5.43915 5.49593 5.63245 5.72986 5.79076 5.94956 6.16911 6.17799 6.23953 6.30084 6.33407 6.37032 6.44646 6.51559 6.55812 6.59066 6.62788 6.70394 6.81625 6.88530 6.96757 7.00453 7.15539 7.22126 7.35917 7.39697 7.47723 8.04683 8.69266 8.94204 9.67110 10.10731 10.61503 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.005370 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.616954 B = 5213.025298 C = 5912.771414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S -0.095 6.095 3 C -0.076 4.076 4 C -0.139 4.139 5 C -0.118 4.118 6 C -0.127 4.127 7 C -0.092 4.092 8 C -0.021 4.021 9 C -0.104 4.104 10 C 0.527 3.473 11 O -0.602 6.602 12 N -0.450 5.450 13 C -0.325 4.325 14 H 0.082 0.918 15 C 0.049 3.951 16 N -0.852 5.852 17 Si 0.893 3.107 18 H -0.265 1.265 19 H -0.281 1.281 20 H -0.275 1.275 21 C 0.136 3.864 22 C -0.128 4.128 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.125 4.125 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.269 0.731 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 -0.669 0.982 7.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 S 0.147 5.853 3 C -0.189 4.189 4 C -0.163 4.163 5 C -0.138 4.138 6 C -0.148 4.148 7 C -0.112 4.112 8 C -0.027 4.027 9 C -0.144 4.144 10 C 0.317 3.683 11 O -0.487 6.487 12 N -0.170 5.170 13 C -0.453 4.453 14 H 0.100 0.900 15 C -0.157 4.157 16 N -0.489 5.489 17 Si 0.718 3.282 18 H -0.189 1.189 19 H -0.207 1.207 20 H -0.201 1.201 21 C 0.031 3.969 22 C -0.166 4.166 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.163 4.163 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.142 0.858 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.745 -1.389 0.563 6.910 hybrid contribution -0.454 1.003 0.898 1.421 sum -7.200 -0.386 1.461 7.356 Atomic orbital electron populations 1.23684 0.97367 1.06384 1.04960 1.85811 1.03502 1.03701 1.92246 1.21576 0.96197 0.96159 1.04976 1.20972 0.97494 0.93299 1.04495 1.20833 0.96344 0.94964 1.01628 1.21053 0.92818 0.99095 1.01815 1.21035 0.99533 0.92006 0.98584 1.19482 0.92116 0.94797 0.96317 1.20933 0.98292 0.97279 0.97916 1.19852 0.78997 0.80192 0.89253 1.90515 1.52266 1.59231 1.46655 1.43380 1.31282 1.38194 1.04184 1.19196 1.29976 0.92518 1.03617 0.90034 1.25488 0.93874 0.96021 1.00286 1.70110 1.38330 1.06688 1.33746 0.86411 0.78327 0.79971 0.83463 1.18871 1.20687 1.20090 1.21525 0.95096 0.93580 0.86665 1.22662 0.97241 0.97127 0.99612 1.22440 0.96158 0.98656 0.98669 1.22264 0.96626 0.96652 0.99881 1.22368 0.96726 0.95721 1.01499 0.90387 0.90206 0.87946 0.86618 0.86568 0.86424 0.85614 0.89386 0.85752 0.92097 0.90568 0.90722 0.92827 0.92412 0.92536 0.93136 0.91753 0.93612 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.15 101.05 0.92 -0.99 16 2 S -0.10 -1.71 20.86 -107.50 -2.24 -3.95 16 3 C -0.08 -1.48 6.11 -39.03 -0.24 -1.72 16 4 C -0.14 -2.29 9.36 -39.37 -0.37 -2.65 16 5 C -0.12 -1.81 10.04 -39.62 -0.40 -2.21 16 6 C -0.13 -2.08 10.04 -39.53 -0.40 -2.48 16 7 C -0.09 -1.78 9.67 -39.62 -0.38 -2.17 16 8 C -0.02 -0.45 4.39 -104.40 -0.46 -0.91 16 9 C -0.10 -2.42 3.67 -29.04 -0.11 -2.53 16 10 C 0.53 13.43 7.14 -10.99 -0.08 13.36 16 11 O -0.60 -16.66 15.39 5.55 0.09 -16.58 16 12 N -0.45 -11.04 2.38 -106.55 -0.25 -11.29 16 13 C -0.33 -7.90 7.06 -14.93 -0.11 -8.01 16 14 H 0.08 1.97 6.98 -52.49 -0.37 1.60 16 15 C 0.05 1.18 3.45 -17.47 -0.06 1.12 16 16 N -0.85 -21.39 11.47 55.50 0.64 -20.75 16 17 Si 0.89 18.78 29.61 -169.99 -5.03 13.75 16 18 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 19 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 C 0.14 3.01 3.29 -66.82 -0.22 2.79 16 22 C -0.13 -2.44 6.43 -25.03 -0.16 -2.60 16 23 C -0.12 -1.95 6.91 -24.70 -0.17 -2.12 16 24 C -0.12 -2.00 6.83 -25.07 -0.17 -2.17 16 25 C -0.12 -2.58 6.24 -25.62 -0.16 -2.74 16 26 H 0.08 0.85 7.74 -51.92 -0.40 0.44 16 27 H 0.08 0.95 7.76 -51.93 -0.40 0.55 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.12 1.58 5.88 -52.49 -0.31 1.27 16 30 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.13 2.42 8.06 -52.49 -0.42 1.99 16 33 H 0.09 2.03 6.98 -51.93 -0.36 1.66 16 34 H 0.13 3.01 4.83 -51.93 -0.25 2.76 16 35 H 0.27 6.39 8.32 -40.82 -0.34 6.05 16 36 H 0.08 1.83 6.95 -51.93 -0.36 1.47 16 37 H 0.07 1.49 6.65 -51.93 -0.35 1.14 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 44 H 0.09 2.21 7.17 -51.93 -0.37 1.84 16 LS Contribution 361.25 15.07 5.44 5.44 Total: -1.00 -28.56 361.25 -10.45 -39.01 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.53 Total: 10.39 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -2.55 Total: -16.02 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.38 Total: -32.05 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: 0.09 Total: -16.58 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.24 Total: -3.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.56 -10.45 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346782794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.251 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds