Wall clock time and date at job start Tue Mar 31 2020 12:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34782 * 120.00035 * 2 1 4 4 O 1.21278 * 119.99772 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.99775 * 359.97438 * 3 2 1 6 6 C 1.53002 * 109.46957 * 180.02562 * 5 3 2 7 7 H 1.08997 * 109.46914 * 55.00281 * 6 5 3 8 8 C 1.50701 * 109.47378 * 294.99960 * 6 5 3 9 9 H 1.07996 * 119.99657 * 334.73022 * 8 6 5 10 10 C 1.37874 * 119.99932 * 154.71823 * 8 6 5 11 11 N 1.31519 * 119.99853 * 184.85571 * 10 8 6 12 12 Si 1.86799 * 119.99963 * 4.86306 * 10 8 6 13 13 H 1.48496 * 109.47418 * 84.63569 * 12 10 8 14 14 H 1.48509 * 109.46732 * 204.63099 * 12 10 8 15 15 H 1.48496 * 109.47234 * 324.62811 * 12 10 8 16 16 C 1.50709 * 109.46990 * 174.99950 * 6 5 3 17 17 C 1.38234 * 119.99863 * 55.28040 * 16 6 5 18 18 C 1.38236 * 120.00131 * 179.76281 * 17 16 6 19 19 C 1.38238 * 119.99275 * 0.50582 * 18 17 16 20 20 C 1.38230 * 120.00467 * 359.74909 * 19 18 17 21 21 C 1.38231 * 119.99830 * 235.54619 * 16 6 5 22 22 C 1.46499 * 119.99855 * 179.97438 * 2 1 3 23 23 H 1.09001 * 108.85037 * 179.30449 * 22 2 1 24 24 C 1.52935 * 108.89109 * 297.87925 * 22 2 1 25 25 C 1.54828 * 109.12907 * 90.65027 * 24 22 2 26 26 S 1.83989 * 100.87837 * 41.43631 * 25 24 22 27 27 C 1.53705 * 108.88642 * 60.72747 * 22 2 1 28 28 H 1.09002 * 109.47525 * 270.00383 * 1 2 3 29 29 H 1.09009 * 109.46755 * 30.00818 * 1 2 3 30 30 H 1.09000 * 109.46844 * 150.00457 * 1 2 3 31 31 H 1.08999 * 109.47443 * 300.00577 * 5 3 2 32 32 H 1.09004 * 109.47505 * 60.00620 * 5 3 2 33 33 H 0.96996 * 119.99710 * 180.02562 * 11 10 8 34 34 H 1.08008 * 119.99800 * 359.97438 * 17 16 6 35 35 H 1.08002 * 120.00194 * 180.22991 * 18 17 16 36 36 H 1.08000 * 119.99360 * 179.72152 * 19 18 17 37 37 H 1.08003 * 119.99962 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.00200 * 0.02562 * 21 16 6 39 39 H 1.09003 * 109.60768 * 210.62326 * 24 22 2 40 40 H 1.09002 * 109.60805 * 330.76571 * 24 22 2 41 41 H 1.09001 * 111.12476 * 283.54483 * 25 24 22 42 42 H 1.09000 * 111.20631 * 159.35915 * 25 24 22 43 43 H 1.09001 * 110.34302 * 0.90454 * 27 22 2 44 44 H 1.09006 * 110.33958 * 123.04979 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3796 3.6352 -0.0011 7 1 3.0637 3.5280 -0.8429 8 6 3.1625 3.6275 1.2866 9 1 2.7403 3.1765 2.1724 10 6 4.4177 4.1959 1.3336 11 7 5.1399 4.1055 2.4291 12 14 5.0926 5.0946 -0.1584 13 1 4.6047 6.4971 -0.1542 14 1 6.5769 5.0868 -0.1114 15 1 4.6330 4.4143 -1.3958 16 6 1.6302 4.9368 -0.1255 17 6 0.6314 5.2484 0.7780 18 6 -0.0527 6.4444 0.6668 19 6 0.2549 7.3241 -0.3542 20 6 1.2500 7.0102 -1.2608 21 6 1.9378 5.8165 -1.1464 22 6 2.1975 -1.2687 0.0006 23 1 3.2668 -1.0580 -0.0120 24 6 1.8590 -2.0353 1.2799 25 6 0.6371 -2.9487 1.0159 26 16 1.0422 -3.5954 -0.6582 27 6 1.8304 -2.0557 -1.2677 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5140 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7590 2.5298 -0.8907 32 1 0.7584 2.5303 0.8892 33 1 6.0228 4.5057 2.4623 34 1 0.3880 4.5588 1.5728 35 1 -0.8305 6.6895 1.3749 36 1 -0.2827 8.2566 -0.4437 37 1 1.4900 7.6974 -2.0587 38 1 2.7148 5.5710 -1.8551 39 1 2.7124 -2.6446 1.5778 40 1 1.6206 -1.3304 2.0765 41 1 -0.2881 -2.3726 1.0013 42 1 0.5830 -3.7558 1.7465 43 1 1.1286 -1.4863 -1.8771 44 1 2.7272 -2.2888 -1.8418 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356530715.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:21 Heat of formation + Delta-G solvation = -23.010566 kcal Electronic energy + Delta-G solvation = -25030.972051 eV Core-core repulsion = 21652.662816 eV Total energy + Delta-G solvation = -3378.309235 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.18658 -39.99844 -37.99042 -35.86838 -34.41515 -33.62565 -31.64962 -30.87746 -30.09915 -27.98320 -27.85282 -25.47490 -24.30285 -23.35149 -22.21837 -20.97827 -19.76264 -19.05960 -18.32028 -17.80020 -17.43336 -16.96999 -16.65310 -16.18566 -15.88117 -15.74170 -15.33213 -15.05906 -14.77602 -14.57914 -14.25661 -14.04233 -13.86814 -13.78439 -13.54946 -13.36471 -13.26513 -13.07637 -12.94094 -12.87657 -12.64447 -12.42205 -12.21797 -12.11526 -11.89957 -11.78883 -11.47419 -11.07953 -11.01525 -10.74770 -10.46725 -9.63870 -9.61756 -9.31375 -8.75803 -8.24162 -6.19858 0.65204 0.71373 0.82238 1.27387 1.28758 1.31474 1.36792 1.86478 2.08237 2.36581 3.05801 3.19225 3.39277 3.75101 3.86065 3.95321 4.03227 4.08666 4.15019 4.26369 4.28847 4.31684 4.41233 4.47723 4.51846 4.57129 4.62295 4.70680 4.77617 4.81679 4.84733 4.88251 4.95263 5.02972 5.07560 5.21576 5.36326 5.37980 5.64195 5.69276 5.75009 5.80252 5.99768 6.30101 6.32916 6.47407 6.78615 7.41346 7.43940 8.92977 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.003932 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.364029 B = 7119.222216 C = 8055.159899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.617 5.617 3 C 0.510 3.490 4 O -0.560 6.560 5 C -0.105 4.105 6 C 0.050 3.950 7 H 0.030 0.970 8 C -0.458 4.458 9 H 0.035 0.965 10 C 0.020 3.980 11 N -0.952 5.952 12 Si 0.919 3.081 13 H -0.261 1.261 14 H -0.302 1.302 15 H -0.252 1.252 16 C -0.062 4.062 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.141 4.141 20 C -0.125 4.125 21 C -0.163 4.163 22 C 0.131 3.869 23 H 0.081 0.919 24 C -0.130 4.130 25 C -0.053 4.053 26 S -0.315 6.315 27 C -0.066 4.066 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.258 0.742 34 H 0.118 0.882 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.104 0.896 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.379 -7.250 -6.779 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.353 5.353 3 C 0.300 3.700 4 O -0.436 6.436 5 C -0.145 4.145 6 C 0.030 3.970 7 H 0.048 0.952 8 C -0.496 4.496 9 H 0.053 0.947 10 C -0.176 4.176 11 N -0.594 5.594 12 Si 0.746 3.254 13 H -0.186 1.186 14 H -0.229 1.229 15 H -0.177 1.177 16 C -0.062 4.062 17 C -0.138 4.138 18 C -0.138 4.138 19 C -0.159 4.159 20 C -0.142 4.142 21 C -0.181 4.181 22 C 0.026 3.974 23 H 0.099 0.901 24 C -0.169 4.169 25 C -0.200 4.200 26 S -0.091 6.091 27 C -0.215 4.215 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.136 0.864 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.142 0.858 43 H 0.123 0.877 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.766 -8.278 -7.242 19.224 hybrid contribution 1.587 1.414 0.290 2.145 sum -14.179 -6.865 -6.953 17.220 Atomic orbital electron populations 1.22074 0.77537 1.04535 1.03174 1.48152 1.08068 1.04320 1.74762 1.21157 0.87851 0.86313 0.74692 1.90725 1.16317 1.87377 1.49231 1.21560 0.98224 0.90572 1.04117 1.18120 0.93215 0.89207 0.96434 0.95219 1.20806 0.99674 1.34019 0.95066 0.94664 1.25593 0.97322 0.97066 0.97633 1.70031 1.11768 1.47785 1.29786 0.86233 0.76558 0.80313 0.82308 1.18577 1.22913 1.17683 1.20491 0.94433 0.97598 0.93702 1.21039 0.96324 0.98078 0.98338 1.21437 1.00108 0.93645 0.98597 1.21345 0.98552 1.00513 0.95490 1.21324 0.96558 0.96119 1.00240 1.21185 1.01203 0.96423 0.99302 1.21544 0.98345 0.84072 0.93444 0.90097 1.22581 0.98777 0.98616 0.96958 1.24461 1.00551 1.01540 0.93454 1.87884 1.77741 1.23501 1.19925 1.24296 1.03708 0.94219 0.99265 0.91324 0.89472 0.89523 0.87681 0.88320 0.93301 0.86380 0.83817 0.83509 0.84531 0.88134 0.89529 0.89871 0.87314 0.85777 0.87736 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 8.35 127.77 1.07 2.27 16 2 N -0.62 -16.86 2.55 -821.37 -2.10 -18.96 16 3 C 0.51 19.47 7.42 87.65 0.65 20.12 16 4 O -0.56 -28.07 14.29 -3.02 -0.04 -28.12 16 5 C -0.11 -3.70 3.39 29.85 0.10 -3.60 16 6 C 0.05 2.25 1.24 -12.28 -0.02 2.24 16 7 H 0.03 1.48 5.26 -2.39 -0.01 1.47 16 8 C -0.46 -25.85 7.19 25.60 0.18 -25.67 16 9 H 0.04 2.18 8.05 -2.91 -0.02 2.16 16 10 C 0.02 1.22 5.47 84.65 0.46 1.68 16 11 N -0.95 -62.29 13.96 21.45 0.30 -61.99 16 12 Si 0.92 47.94 24.76 68.60 1.70 49.64 16 13 H -0.26 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.30 -15.97 7.11 99.48 0.71 -15.26 16 15 H -0.25 -12.53 5.95 99.48 0.59 -11.94 16 16 C -0.06 -2.48 4.30 -19.86 -0.09 -2.57 16 17 C -0.12 -4.24 8.94 22.27 0.20 -4.04 16 18 C -0.12 -3.49 10.05 22.27 0.22 -3.26 16 19 C -0.14 -3.87 10.05 22.27 0.22 -3.64 16 20 C -0.12 -3.86 10.05 22.27 0.22 -3.63 16 21 C -0.16 -6.18 8.15 22.27 0.18 -6.00 16 22 C 0.13 3.42 3.04 45.21 0.14 3.55 16 23 H 0.08 2.72 6.85 -2.39 -0.02 2.71 16 24 C -0.13 -2.75 5.64 31.20 0.18 -2.58 16 25 C -0.05 -0.82 6.95 72.61 0.50 -0.32 16 26 S -0.32 -6.36 23.22 -56.49 -1.31 -7.67 16 27 C -0.07 -1.42 6.48 72.22 0.47 -0.95 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.36 6.44 -2.38 -0.02 1.34 16 30 H 0.09 1.21 6.07 -2.39 -0.01 1.20 16 31 H 0.11 2.94 7.40 -2.39 -0.02 2.93 16 32 H 0.10 3.19 7.30 -2.39 -0.02 3.17 16 33 H 0.26 16.14 8.31 -92.71 -0.77 15.36 16 34 H 0.12 4.06 7.37 -2.91 -0.02 4.04 16 35 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 38 H 0.10 3.90 6.76 -2.91 -0.02 3.88 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.08 1.92 8.02 -2.39 -0.02 1.90 16 41 H 0.11 1.38 6.64 -2.39 -0.02 1.36 16 42 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.10 2.09 7.01 -2.39 -0.02 2.07 16 44 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -77.40 353.87 4.13 -73.27 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.88 Total: 20.23 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 4.70 Total: -26.41 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -1.80 Total: -80.95 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.04 Total: -28.12 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.70 Total: 49.64 kcal Atomic # 16 Polarization: -6.36 SS G_CDS: -1.31 Total: -7.67 kcal Total: -77.40 4.13 -73.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356530715.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.262 kcal (2) G-P(sol) polarization free energy of solvation -77.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds