Wall clock time and date at job start Tue Mar 31 2020 12:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99854 * 2 1 4 4 O 1.21274 * 120.00135 * 180.27973 * 3 2 1 5 5 C 1.50706 * 119.99766 * 0.02562 * 3 2 1 6 6 S 1.81399 * 109.46955 * 179.97438 * 5 3 2 7 7 C 1.81393 * 103.00232 * 179.97438 * 6 5 3 8 8 C 1.50701 * 109.47513 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99599 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00244 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99980 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99765 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47205 * 60.00269 * 12 10 8 14 14 H 1.48500 * 109.46690 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46992 * 299.99651 * 12 10 8 16 16 C 1.46496 * 119.99880 * 180.02562 * 2 1 3 17 17 H 1.09007 * 109.24794 * 179.46680 * 16 2 1 18 18 C 1.52732 * 109.25681 * 59.99663 * 16 2 1 19 19 C 1.53334 * 108.37313 * 188.63665 * 18 16 2 20 20 C 1.52739 * 108.37300 * 69.92335 * 19 18 16 21 21 C 1.50633 * 110.58890 * 308.94646 * 20 19 18 22 22 C 1.38919 * 117.74937 * 197.46947 * 21 20 19 23 23 C 1.37928 * 120.54731 * 180.18919 * 22 21 20 24 24 C 1.38273 * 119.77195 * 0.04501 * 23 22 21 25 25 C 1.37929 * 119.76901 * 359.89469 * 24 23 22 26 26 C 1.37667 * 122.57128 * 17.52898 * 21 20 19 27 27 H 1.09002 * 109.47335 * 89.99996 * 1 2 3 28 28 H 1.09001 * 109.47076 * 209.99400 * 1 2 3 29 29 H 1.08996 * 109.47068 * 329.99428 * 1 2 3 30 30 H 1.09000 * 109.47161 * 299.99737 * 5 3 2 31 31 H 1.09001 * 109.46740 * 59.99879 * 5 3 2 32 32 H 1.09001 * 109.47259 * 300.00509 * 7 6 5 33 33 H 1.09010 * 109.47052 * 60.00011 * 7 6 5 34 34 H 0.97000 * 120.00020 * 179.97438 * 11 10 8 35 35 H 1.09004 * 109.68550 * 308.36028 * 18 16 2 36 36 H 1.09006 * 109.68391 * 68.92258 * 18 16 2 37 37 H 1.08997 * 109.68486 * 189.64608 * 19 18 16 38 38 H 1.08997 * 109.68614 * 310.20616 * 19 18 16 39 39 H 1.09008 * 109.25043 * 69.22921 * 20 19 18 40 40 H 1.08995 * 109.25610 * 188.69469 * 20 19 18 41 41 H 1.08002 * 119.72270 * 0.21057 * 22 21 20 42 42 H 1.07999 * 120.11401 * 180.02562 * 23 22 21 43 43 H 1.07993 * 120.11314 * 179.87100 * 24 23 22 44 44 H 1.07998 * 119.72664 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1673 -0.0051 5 6 1.3853 2.4723 0.0006 6 16 2.5640 3.8511 0.0012 7 6 1.4858 5.3098 0.0011 8 6 2.3297 6.5584 0.0022 9 1 3.4069 6.4820 0.0025 10 6 1.7265 7.7982 0.0017 11 7 0.4146 7.8912 0.0009 12 14 2.7726 9.3458 0.0024 13 1 3.6305 9.3639 -1.2095 14 1 1.8898 10.5399 0.0024 15 1 3.6289 9.3639 1.2155 16 6 2.1975 -1.2687 -0.0006 17 1 3.2684 -1.0654 -0.0101 18 6 1.8249 -2.0649 -1.2496 19 6 2.4277 -3.4693 -1.1252 20 6 1.6746 -4.2211 -0.0294 21 6 1.6143 -3.3991 1.2314 22 6 1.3051 -4.0545 2.4166 23 6 1.2306 -3.3574 3.6044 24 6 1.4645 -1.9946 3.6165 25 6 1.7728 -1.3422 2.4410 26 6 1.8507 -2.0430 1.2441 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5137 29 1 -0.3633 0.8899 0.5139 30 1 0.7583 2.5302 -0.8892 31 1 0.7590 2.5297 0.8908 32 1 0.8568 5.2967 -0.8891 33 1 0.8563 5.2964 0.8909 34 1 -0.0098 8.7635 0.0009 35 1 0.7402 -2.1366 -1.3293 36 1 2.2267 -1.5700 -2.1338 37 1 2.3232 -3.9988 -2.0721 38 1 3.4823 -3.3941 -0.8604 39 1 0.6608 -4.4319 -0.3699 40 1 2.1864 -5.1606 0.1788 41 1 1.1220 -5.1189 2.4079 42 1 0.9902 -3.8740 4.5218 43 1 1.4056 -1.4430 4.5430 44 1 1.9558 -0.2779 2.4513 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413010692.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:14 Heat of formation + Delta-G solvation = -36.746445 kcal Electronic energy + Delta-G solvation = -24004.651783 eV Core-core repulsion = 20625.746916 eV Total energy + Delta-G solvation = -3378.904868 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77179 -40.21584 -37.44709 -36.02101 -35.29457 -33.06706 -31.19257 -31.00650 -30.59097 -29.20954 -27.73326 -25.27694 -24.51782 -23.64964 -23.06009 -20.72618 -20.13687 -18.68385 -18.35254 -17.89746 -17.33709 -16.98251 -16.54150 -16.30002 -16.26966 -16.05662 -15.15446 -14.86693 -14.59858 -14.58081 -14.38841 -14.30369 -14.23490 -14.11644 -13.85185 -13.57072 -13.38118 -13.26265 -13.05428 -12.72836 -12.59533 -12.55525 -12.34503 -12.07278 -11.92987 -11.63944 -11.55991 -11.35510 -11.03586 -10.74631 -10.64932 -9.87388 -9.67505 -9.50372 -8.51577 -8.34242 -6.46697 0.34323 0.43905 0.73757 1.39660 1.42545 1.42805 1.51481 1.93772 1.98440 2.36749 2.82657 3.00494 3.38234 3.63276 3.71617 3.95559 3.96727 4.00176 4.08509 4.15937 4.20913 4.25686 4.30683 4.43773 4.52378 4.58354 4.61219 4.70812 4.82380 4.90589 4.92666 4.94529 4.97933 5.02493 5.08533 5.12257 5.27074 5.32980 5.40841 5.56439 5.58807 5.60963 5.73625 5.88736 6.08655 6.16734 6.59582 6.99277 7.20885 8.77677 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.025702 B = 0.002548 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.133629 B =10987.919988 C =11440.822962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.598 5.598 3 C 0.533 3.467 4 O -0.562 6.562 5 C -0.110 4.110 6 S -0.274 6.274 7 C 0.087 3.913 8 C -0.539 4.539 9 H 0.058 0.942 10 C 0.018 3.982 11 N -0.922 5.922 12 Si 0.974 3.026 13 H -0.268 1.268 14 H -0.273 1.273 15 H -0.268 1.268 16 C 0.182 3.818 17 H 0.078 0.922 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.078 4.078 21 C -0.070 4.070 22 C -0.125 4.125 23 C -0.116 4.116 24 C -0.136 4.136 25 C -0.121 4.121 26 C -0.102 4.102 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.271 0.729 35 H 0.085 0.915 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.128 0.872 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.659 -29.228 1.698 29.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.331 5.331 3 C 0.321 3.679 4 O -0.440 6.440 5 C -0.261 4.261 6 S -0.048 6.048 7 C -0.061 4.061 8 C -0.578 4.578 9 H 0.076 0.924 10 C -0.183 4.183 11 N -0.561 5.561 12 Si 0.797 3.203 13 H -0.192 1.192 14 H -0.197 1.197 15 H -0.193 1.193 16 C 0.079 3.921 17 H 0.096 0.904 18 C -0.159 4.159 19 C -0.152 4.152 20 C -0.115 4.115 21 C -0.071 4.071 22 C -0.142 4.142 23 C -0.134 4.134 24 C -0.154 4.154 25 C -0.139 4.139 26 C -0.103 4.103 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.167 0.833 42 H 0.163 0.837 43 H 0.146 0.854 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.097 -29.160 1.689 29.373 hybrid contribution -0.921 1.513 0.261 1.790 sum -4.018 -27.648 1.951 28.006 Atomic orbital electron populations 1.22034 0.77214 1.04321 1.03540 1.47859 1.08265 1.04152 1.72812 1.19944 0.87252 0.85208 0.75530 1.90698 1.15414 1.87223 1.50654 1.23399 1.01381 0.93369 1.07939 1.87261 1.18404 1.01094 1.98089 1.20818 0.95284 0.91585 0.98374 1.20921 0.93237 0.90465 1.53187 0.92429 1.25851 0.96475 1.02242 0.93716 1.70029 1.09989 1.26166 1.49896 0.85366 0.78353 0.77318 0.79252 1.19246 1.19743 1.19313 1.19871 0.96679 0.81871 0.93710 0.90436 1.21866 1.02587 0.96063 0.95371 1.21536 0.99441 0.94205 1.00057 1.20570 1.02317 0.97776 0.90797 1.19905 0.98140 0.92201 0.96836 1.21481 1.00062 1.01111 0.91592 1.21408 0.98956 0.93799 0.99264 1.21271 1.00537 0.95772 0.97816 1.21108 1.00273 0.99242 0.93300 1.19771 1.02258 0.94058 0.94185 0.90321 0.89652 0.90308 0.85923 0.86209 0.96111 0.96216 0.91968 0.89613 0.91750 0.88755 0.92419 0.88747 0.88867 0.83340 0.83730 0.85403 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.21 8.98 127.77 1.15 2.36 16 2 N -0.60 -14.78 1.91 -827.42 -1.58 -16.36 16 3 C 0.53 18.00 7.55 87.66 0.66 18.67 16 4 O -0.56 -23.98 15.18 -3.01 -0.05 -24.03 16 5 C -0.11 -3.78 4.98 71.24 0.35 -3.43 16 6 S -0.27 -13.06 20.79 -56.49 -1.17 -14.23 16 7 C 0.09 4.70 5.70 71.24 0.41 5.10 16 8 C -0.54 -31.70 9.13 25.60 0.23 -31.47 16 9 H 0.06 3.42 7.71 -2.91 -0.02 3.40 16 10 C 0.02 1.04 5.46 84.65 0.46 1.50 16 11 N -0.92 -54.19 13.29 21.45 0.28 -53.91 16 12 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 16 C 0.18 4.20 2.52 44.13 0.11 4.31 16 17 H 0.08 2.32 6.88 -2.38 -0.02 2.31 16 18 C -0.12 -2.00 5.37 30.62 0.16 -1.83 16 19 C -0.11 -1.41 5.98 30.62 0.18 -1.23 16 20 C -0.08 -0.80 5.67 29.74 0.17 -0.64 16 21 C -0.07 -1.12 5.74 -19.86 -0.11 -1.24 16 22 C -0.12 -1.72 9.61 22.36 0.21 -1.50 16 23 C -0.12 -1.77 10.05 22.20 0.22 -1.54 16 24 C -0.14 -2.66 10.05 22.20 0.22 -2.44 16 25 C -0.12 -2.87 9.06 22.36 0.20 -2.66 16 26 C -0.10 -2.16 4.55 -19.86 -0.09 -2.25 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.27 7.31 -2.39 -0.02 1.25 16 29 H 0.08 1.32 6.44 -2.39 -0.02 1.30 16 30 H 0.12 3.69 8.11 -2.39 -0.02 3.67 16 31 H 0.12 3.65 7.40 -2.39 -0.02 3.63 16 32 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.09 1.17 7.35 -2.39 -0.02 1.15 16 36 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 39 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.09 0.69 8.12 -2.39 -0.02 0.67 16 41 H 0.15 1.18 8.05 -2.91 -0.02 1.16 16 42 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 43 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 44 H 0.09 2.64 7.49 -2.91 -0.02 2.62 16 Total: -1.00 -73.34 368.67 5.04 -68.30 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.98 Total: 12.03 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 4.55 Total: -18.28 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -1.29 Total: -70.27 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.05 Total: -24.03 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: -13.06 SS G_CDS: -1.17 Total: -14.23 kcal Total: -73.34 5.04 -68.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413010692.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.549 kcal (2) G-P(sol) polarization free energy of solvation -73.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds