Wall clock time and date at job start Tue Mar 31 2020 12:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36004 * 116.99765 * 2 1 4 4 C 1.38750 * 120.05948 * 359.97438 * 3 2 1 5 5 C 1.37734 * 119.44889 * 180.28240 * 4 3 2 6 6 C 1.39593 * 120.71775 * 359.91173 * 5 4 3 7 7 C 1.38135 * 120.05690 * 359.60165 * 6 5 4 8 8 C 1.38172 * 120.05355 * 179.97438 * 3 2 1 9 9 C 1.50056 * 124.79689 * 180.81834 * 7 6 5 10 10 H 1.09004 * 108.54479 * 98.59460 * 9 7 6 11 11 N 1.46901 * 108.65757 * 216.53387 * 9 7 6 12 12 C 1.46896 * 111.00061 * 212.47654 * 11 9 7 13 13 C 1.53003 * 109.47391 * 174.95727 * 12 11 9 14 14 C 1.50692 * 115.54892 * 294.88883 * 13 12 11 15 15 H 1.08003 * 120.00203 * 95.14479 * 14 13 12 16 16 C 1.37884 * 120.00180 * 274.86555 * 14 13 12 17 17 N 1.31515 * 119.99645 * 355.45565 * 16 14 13 18 18 Si 1.86796 * 120.00360 * 175.45155 * 16 14 13 19 19 H 1.48508 * 109.46965 * 59.99797 * 18 16 14 20 20 H 1.48498 * 109.47266 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47006 * 300.00277 * 18 16 14 22 22 C 1.53004 * 117.49567 * 80.55460 * 13 12 11 23 23 C 1.52997 * 117.49855 * 149.21649 * 13 12 11 24 24 C 1.51859 * 113.60946 * 337.60011 * 9 7 6 25 25 C 1.53544 * 108.95636 * 60.30422 * 24 9 7 26 26 S 1.76487 * 117.65056 * 179.51867 * 6 5 4 27 27 H 1.08993 * 109.47414 * 300.00256 * 1 2 3 28 28 H 1.09007 * 109.47070 * 60.00277 * 1 2 3 29 29 H 1.09002 * 109.47297 * 179.97438 * 1 2 3 30 30 H 1.08006 * 120.27407 * 0.30393 * 4 3 2 31 31 H 1.08003 * 119.63870 * 179.88698 * 5 4 3 32 32 H 1.07998 * 119.48302 * 359.97438 * 8 3 2 33 33 H 1.00893 * 111.00092 * 88.51996 * 11 9 7 34 34 H 1.09005 * 109.47578 * 54.95757 * 12 11 9 35 35 H 1.09001 * 109.46982 * 294.95692 * 12 11 9 36 36 H 0.96998 * 119.99655 * 180.02562 * 17 16 14 37 37 H 1.08994 * 117.49582 * 215.00285 * 22 13 12 38 38 H 1.09001 * 117.49789 * 0.02632 * 22 13 12 39 39 H 1.08996 * 117.49995 * 359.97438 * 23 13 12 40 40 H 1.09006 * 117.49806 * 144.97893 * 23 13 12 41 41 H 1.08996 * 109.56261 * 180.14646 * 24 9 7 42 42 H 1.09003 * 109.55746 * 300.35822 * 24 9 7 43 43 H 1.09000 * 109.89345 * 46.74498 * 25 24 9 44 44 H 1.08998 * 109.89581 * 167.85889 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3762 -0.0005 5 6 1.9302 3.5967 -0.0064 6 6 3.3240 3.6725 -0.0100 7 6 4.0798 2.5162 0.0007 8 6 3.4262 1.2855 0.0005 9 6 5.5796 2.4736 0.0157 10 1 5.9116 2.3122 1.0413 11 7 6.0259 1.3402 -0.8053 12 6 7.2693 0.7642 -0.2763 13 6 7.6342 -0.4862 -1.0790 14 6 6.6696 -1.6380 -0.9620 15 1 5.8922 -1.7685 -1.7004 16 6 6.7829 -2.5287 0.0844 17 7 7.7853 -2.4261 0.9296 18 14 5.5127 -3.8810 0.3017 19 1 5.4988 -4.7457 -0.9055 20 1 5.8583 -4.6981 1.4926 21 1 4.1708 -3.2738 0.4911 22 6 8.3316 -0.2827 -2.4255 23 6 9.1196 -0.8211 -1.2286 24 6 6.2294 3.7409 -0.5115 25 6 5.7946 4.9255 0.3633 26 16 4.0570 5.2778 -0.0307 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2130 2.3260 0.0040 31 1 1.3458 4.5051 -0.0087 32 1 4.0071 0.3750 0.0014 33 1 6.1360 1.6138 -1.7702 34 1 7.1287 0.4955 0.7708 35 1 8.0727 1.4962 -0.3588 36 1 7.8652 -3.0529 1.6655 37 1 8.0927 -0.9819 -3.2267 38 1 8.5308 0.7420 -2.7393 39 1 9.8368 -0.1504 -0.7557 40 1 9.3991 -1.8746 -1.2422 41 1 7.3138 3.6380 -0.4736 42 1 5.9149 3.9110 -1.5413 43 1 5.8902 4.6632 1.4169 44 1 6.4097 5.7971 0.1398 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430763985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:34 Heat of formation + Delta-G solvation = 2.527186 kcal Electronic energy + Delta-G solvation = -24972.466549 eV Core-core repulsion = 21595.264714 eV Total energy + Delta-G solvation = -3377.201835 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.18445 -39.60562 -38.41994 -36.92306 -33.95574 -33.39299 -31.97232 -31.01670 -28.37567 -27.86822 -27.04687 -24.87261 -23.87838 -23.56308 -22.81316 -21.51355 -20.91205 -18.88399 -18.23798 -17.99575 -17.38093 -16.69245 -16.66757 -16.46053 -16.24364 -15.75819 -15.28043 -15.10121 -14.73509 -14.71550 -14.45385 -14.15848 -13.87100 -13.70732 -13.64540 -13.47353 -13.06832 -12.88474 -12.81559 -12.65131 -12.48304 -12.38045 -12.08331 -11.98642 -11.96911 -11.80927 -11.25146 -11.00717 -10.84990 -10.31603 -10.02381 -9.90523 -9.74795 -9.08090 -8.13858 -8.03913 -6.09282 0.24448 0.37793 0.70323 1.39210 1.42642 1.44538 1.49468 2.43615 2.46629 2.65831 3.19418 3.26561 3.60144 3.64498 3.72601 3.88507 3.97018 4.11803 4.26268 4.35404 4.36795 4.40038 4.42449 4.47839 4.57060 4.62577 4.66621 4.69552 4.70457 4.80113 4.88453 4.99691 5.03496 5.05984 5.10510 5.18243 5.32729 5.35728 5.46550 5.69556 5.71634 5.77387 5.88502 6.31571 6.49667 6.52713 6.69021 6.93653 7.55753 9.04010 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.005416 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.498416 B = 5169.024051 C = 7369.472863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.346 6.346 3 C 0.105 3.895 4 C -0.185 4.185 5 C -0.069 4.069 6 C -0.123 4.123 7 C -0.038 4.038 8 C -0.131 4.131 9 C 0.124 3.876 10 H 0.071 0.929 11 N -0.668 5.668 12 C 0.128 3.872 13 C 0.023 3.977 14 C -0.475 4.475 15 H 0.042 0.958 16 C 0.027 3.973 17 N -0.911 5.911 18 Si 0.933 3.067 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.279 1.279 22 C -0.188 4.188 23 C -0.158 4.158 24 C -0.138 4.138 25 C -0.093 4.093 26 S -0.127 6.127 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.161 0.839 31 H 0.152 0.848 32 H 0.115 0.885 33 H 0.341 0.659 34 H 0.037 0.963 35 H 0.019 0.981 36 H 0.255 0.745 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.642 15.889 -1.188 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.261 6.261 3 C 0.059 3.941 4 C -0.205 4.205 5 C -0.092 4.092 6 C -0.236 4.236 7 C -0.045 4.045 8 C -0.152 4.152 9 C 0.014 3.986 10 H 0.089 0.911 11 N -0.298 5.298 12 C -0.001 4.001 13 C 0.022 3.978 14 C -0.513 4.513 15 H 0.060 0.940 16 C -0.172 4.172 17 N -0.550 5.550 18 Si 0.760 3.240 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.205 1.205 22 C -0.225 4.225 23 C -0.196 4.196 24 C -0.179 4.179 25 C -0.242 4.242 26 S 0.114 5.886 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.128 0.872 30 H 0.178 0.822 31 H 0.169 0.831 32 H 0.133 0.867 33 H 0.160 0.840 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.294 16.265 -0.904 19.822 hybrid contribution 0.576 -1.983 0.374 2.099 sum -10.718 14.282 -0.530 17.864 Atomic orbital electron populations 1.23342 0.76446 1.05268 1.02552 1.86152 1.23659 1.27403 1.88877 1.19120 0.92301 0.85021 0.97703 1.21349 1.01085 0.90868 1.07235 1.20906 0.91766 0.98284 0.98211 1.21356 0.96811 0.95771 1.09649 1.19425 0.94982 0.91038 0.99029 1.20639 0.91798 0.98995 1.03790 1.20074 0.90029 0.90418 0.98087 0.91053 1.60172 1.33808 1.30290 1.05491 1.21215 0.88195 0.93222 0.97480 1.18921 0.91066 0.94026 0.93758 1.20458 1.13066 1.08743 1.09016 0.93966 1.25457 0.96503 0.99123 0.96153 1.70086 1.30556 1.38105 1.16233 0.86005 0.80564 0.80083 0.77314 1.20006 1.21217 1.20518 1.22965 1.07165 1.00204 0.92201 1.22383 0.96224 0.98784 1.02243 1.22254 1.02054 0.93319 1.00238 1.23771 0.94242 1.02901 1.03299 1.85109 1.08082 1.06005 1.89447 0.91197 0.91166 0.87201 0.82150 0.83053 0.86673 0.83965 0.94431 0.96313 0.93591 0.91148 0.88995 0.90929 0.92617 0.89032 0.89919 0.88904 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.82 113.37 1.11 1.47 16 2 O -0.35 -11.46 10.50 -93.60 -0.98 -12.44 16 3 C 0.11 3.46 6.67 22.38 0.15 3.61 16 4 C -0.19 -4.64 9.04 22.27 0.20 -4.44 16 5 C -0.07 -1.69 9.64 22.48 0.22 -1.48 16 6 C -0.12 -3.43 6.05 22.57 0.14 -3.29 16 7 C -0.04 -1.25 5.64 -19.82 -0.11 -1.36 16 8 C -0.13 -4.96 9.05 22.52 0.20 -4.75 16 9 C 0.12 3.88 2.25 43.59 0.10 3.98 16 10 H 0.07 2.43 7.58 -2.39 -0.02 2.41 16 11 N -0.67 -24.81 4.77 -498.46 -2.38 -27.19 16 12 C 0.13 5.39 5.31 86.31 0.46 5.85 16 13 C 0.02 1.10 1.63 -52.93 -0.09 1.01 16 14 C -0.47 -26.23 8.74 25.60 0.22 -26.00 16 15 H 0.04 2.41 7.82 -2.91 -0.02 2.39 16 16 C 0.03 1.50 5.43 84.66 0.46 1.96 16 17 N -0.91 -52.87 12.65 21.45 0.27 -52.60 16 18 Si 0.93 45.79 29.54 68.60 2.03 47.82 16 19 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 21 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 22 C -0.19 -7.80 9.96 30.62 0.30 -7.50 16 23 C -0.16 -7.35 9.14 30.62 0.28 -7.07 16 24 C -0.14 -3.23 5.01 30.40 0.15 -3.08 16 25 C -0.09 -1.81 6.53 72.16 0.47 -1.34 16 26 S -0.13 -2.85 21.99 -56.49 -1.24 -4.09 16 27 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 28 H 0.07 1.14 7.67 -2.38 -0.02 1.12 16 29 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.16 2.84 6.33 -2.91 -0.02 2.82 16 31 H 0.15 2.85 8.05 -2.91 -0.02 2.82 16 32 H 0.12 5.30 7.26 -2.91 -0.02 5.28 16 33 H 0.34 11.86 8.42 -89.70 -0.76 11.11 16 34 H 0.04 1.83 7.90 -2.38 -0.02 1.81 16 35 H 0.02 0.71 7.63 -2.39 -0.02 0.69 16 36 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 37 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.06 2.88 8.14 -2.38 -0.02 2.86 16 41 H 0.09 2.00 7.66 -2.39 -0.02 1.98 16 42 H 0.08 1.93 8.01 -2.39 -0.02 1.91 16 43 H 0.09 1.81 8.08 -2.39 -0.02 1.79 16 44 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -65.14 367.90 2.21 -62.94 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.24 Total: 28.00 kcal Atomic # 6 Polarization: -46.70 SS G_CDS: 4.27 Total: -42.43 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.11 Total: -79.78 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.98 Total: -12.44 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -1.24 Total: -4.09 kcal Total: -65.14 2.21 -62.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430763985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.462 kcal (2) G-P(sol) polarization free energy of solvation -65.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds