Wall clock time and date at job start Tue Mar 31 2020 12:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42904 * 113.99302 * 2 1 4 4 C 1.53003 * 109.46371 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47203 * 67.55356 * 4 3 2 6 6 C 1.46905 * 111.00042 * 60.30075 * 5 4 3 7 7 C 1.53004 * 109.47082 * 66.04682 * 6 5 4 8 8 C 1.52998 * 109.46980 * 180.02562 * 7 6 5 9 9 S 1.81004 * 109.47011 * 180.02562 * 8 7 6 10 10 C 1.76202 * 99.99658 * 179.97438 * 9 8 7 11 11 H 1.07996 * 120.00415 * 359.97438 * 10 9 8 12 12 C 1.38799 * 119.99575 * 179.97438 * 10 9 8 13 13 N 1.31633 * 120.00475 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 119.99837 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46910 * 90.00155 * 14 12 10 16 16 H 1.48498 * 109.47041 * 209.99738 * 14 12 10 17 17 H 1.48497 * 109.47206 * 330.00258 * 14 12 10 18 18 C 1.46897 * 111.00289 * 296.34667 * 5 4 3 19 19 H 1.08998 * 109.38791 * 66.79145 * 18 5 4 20 20 C 1.52588 * 109.38674 * 306.99753 * 18 5 4 21 21 C 1.52583 * 110.72589 * 169.17233 * 20 18 5 22 22 C 1.53104 * 109.95402 * 70.67124 * 21 20 18 23 23 S 1.81743 * 108.84209 * 296.97654 * 22 21 20 24 24 C 1.53093 * 109.39369 * 186.59801 * 18 5 4 25 25 H 1.08991 * 109.47542 * 300.00064 * 1 2 3 26 26 H 1.09005 * 109.46665 * 60.00454 * 1 2 3 27 27 H 1.08996 * 109.47045 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47505 * 60.00004 * 3 2 1 29 29 H 1.08992 * 109.47351 * 299.99530 * 3 2 1 30 30 H 1.09003 * 109.47365 * 307.54802 * 4 3 2 31 31 H 1.09006 * 109.46650 * 187.55133 * 4 3 2 32 32 H 1.08996 * 109.46766 * 306.04598 * 6 5 4 33 33 H 1.08995 * 109.46925 * 186.04577 * 6 5 4 34 34 H 1.09001 * 109.47140 * 59.99880 * 7 6 5 35 35 H 1.08997 * 109.46948 * 300.00251 * 7 6 5 36 36 H 1.09010 * 109.47093 * 299.99491 * 8 7 6 37 37 H 1.09001 * 109.47536 * 59.99812 * 8 7 6 38 38 H 0.96997 * 120.00057 * 179.97438 * 13 12 10 39 39 H 1.08997 * 109.22704 * 289.49451 * 20 18 5 40 40 H 1.09001 * 109.22829 * 48.85296 * 20 18 5 41 41 H 1.08996 * 109.39319 * 190.81849 * 21 20 18 42 42 H 1.09002 * 109.39097 * 310.63129 * 21 20 18 43 43 H 1.09000 * 109.57503 * 56.78658 * 22 21 20 44 44 H 1.09002 * 109.57404 * 177.16471 * 22 21 20 45 45 H 1.09001 * 109.57944 * 302.98016 * 24 18 5 46 46 H 1.08998 * 109.57437 * 63.36613 * 24 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9823 0.6187 -1.2791 6 6 3.5842 1.4777 -2.4024 7 6 4.3297 2.8109 -2.3140 8 6 3.9146 3.7058 -3.4835 9 16 4.7970 5.2827 -3.3793 10 6 4.1483 6.0909 -4.8044 11 1 3.4261 5.5867 -5.4293 12 6 4.5655 7.3757 -5.1237 13 7 5.4461 7.9901 -4.3623 14 14 3.8784 8.2323 -6.6349 15 1 2.6563 8.9892 -6.2620 16 1 4.8945 9.1693 -7.1777 17 1 3.5379 7.2195 -7.6661 18 6 3.4746 -0.7483 -1.4561 19 1 2.3901 -0.7206 -1.5618 20 6 3.8434 -1.5875 -0.2363 21 6 3.1108 -2.9258 -0.2600 22 6 3.6807 -3.8139 -1.3693 23 16 3.3817 -3.0139 -2.9736 24 6 4.0925 -1.3610 -2.7157 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6885 1.8465 0.8899 29 1 1.6886 1.8464 -0.8899 30 1 3.8479 0.5319 0.8157 31 1 3.9779 2.1717 0.1357 32 1 2.5102 1.6583 -2.3587 33 1 3.8319 0.9846 -3.3423 34 1 5.4037 2.6303 -2.3575 35 1 4.0821 3.3040 -1.3739 36 1 4.1620 3.2129 -4.4238 37 1 2.8406 3.8864 -3.4395 38 1 5.7379 8.8877 -4.5857 39 1 4.9185 -1.7669 -0.2357 40 1 3.5702 -1.0449 0.6687 41 1 3.2350 -3.4235 0.7017 42 1 2.0502 -2.7546 -0.4447 43 1 4.7527 -3.9425 -1.2195 44 1 3.1880 -4.7859 -1.3484 45 1 3.8691 -0.7303 -3.5761 46 1 5.1723 -1.4419 -2.5904 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433194465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:16 Heat of formation + Delta-G solvation = -51.577057 kcal Electronic energy + Delta-G solvation = -23348.890991 eV Core-core repulsion = 20104.786972 eV Total energy + Delta-G solvation = -3244.104020 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.138 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.81825 -37.32454 -35.61634 -32.78314 -32.41115 -31.34590 -28.64290 -27.54404 -26.38136 -25.74718 -25.01058 -23.04748 -22.24374 -20.54631 -19.68637 -17.59803 -17.37665 -16.86743 -16.35801 -15.53341 -15.50310 -15.00506 -14.80587 -14.72667 -14.57543 -14.28942 -13.94237 -13.52358 -13.39868 -13.22569 -12.79252 -12.59169 -12.32149 -12.12862 -12.03225 -11.75759 -11.62169 -11.57989 -11.22619 -11.17280 -11.06291 -10.91331 -10.82368 -10.68514 -10.50865 -10.29791 -9.81553 -9.69964 -9.51483 -9.05830 -8.30195 -8.22905 -7.82976 -6.52538 -6.22821 -3.92888 1.63494 2.34751 3.21103 3.22265 3.28988 3.49699 3.58008 3.98100 4.22815 4.49500 4.58113 4.73299 4.78835 4.92707 4.97232 5.03350 5.09151 5.13250 5.16476 5.21242 5.27551 5.31948 5.34383 5.38028 5.39686 5.46017 5.54599 5.56378 5.65199 5.75006 5.77361 5.82146 5.89111 5.92912 6.05332 6.13980 6.20863 6.35433 6.58813 6.75476 6.88342 7.05061 7.10773 7.60623 8.36707 9.23609 10.85339 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.002722 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.358208 B =10283.983707 C =10854.111161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.380 6.380 3 C 0.016 3.984 4 C 0.050 3.950 5 N -0.527 5.527 6 C 0.051 3.949 7 C -0.093 4.093 8 C -0.113 4.113 9 S -0.132 6.132 10 C -0.516 4.516 11 H 0.072 0.928 12 C 0.071 3.929 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.084 3.916 19 H 0.082 0.918 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.082 4.082 23 S -0.270 6.270 24 C -0.075 4.075 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.267 0.733 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.956 -21.644 10.933 25.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.299 6.299 3 C -0.062 4.062 4 C -0.079 4.079 5 N -0.251 5.251 6 C -0.078 4.078 7 C -0.131 4.131 8 C -0.262 4.262 9 S 0.096 5.904 10 C -0.664 4.664 11 H 0.090 0.910 12 C -0.138 4.138 13 N -0.505 5.505 14 Si 0.744 3.256 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.026 4.026 19 H 0.099 0.901 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.231 4.231 23 S -0.044 6.044 24 C -0.224 4.224 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.122 0.878 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.935 -21.732 10.786 24.977 hybrid contribution -1.844 1.015 -0.890 2.285 sum -7.779 -20.718 9.896 24.242 Atomic orbital electron populations 1.22724 0.81774 1.02449 0.99932 1.88005 1.19208 1.27616 1.95070 1.23416 0.96426 0.85281 1.01113 1.22481 0.90383 1.01918 0.93086 1.62194 1.59315 1.01468 1.02098 1.22328 0.97800 0.93951 0.93739 1.21275 1.01053 0.92703 0.98098 1.23233 1.02441 1.00708 0.99804 1.84617 1.58179 1.08947 1.38619 1.22690 1.29606 1.02698 1.11426 0.91017 1.25012 0.94904 0.96391 0.97481 1.70022 1.29544 1.13501 1.37483 0.86179 0.78650 0.79146 0.81635 1.20314 1.20738 1.19672 1.21973 0.99229 0.88117 0.93237 0.90090 1.21578 0.99948 0.95073 0.98855 1.21665 1.01139 0.95022 0.97501 1.23477 1.04163 1.01139 0.94283 1.86885 1.80862 1.14745 1.21939 1.23645 1.02987 0.93923 1.01832 0.94271 0.94208 0.89864 0.92923 0.92374 0.89427 0.88372 0.94492 0.90692 0.90710 0.91780 0.92169 0.92502 0.92321 0.92062 0.90013 0.91180 0.90479 0.90024 0.88216 0.87751 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.72 6.51 -35.23 -0.23 -3.95 16 3 C 0.02 0.16 5.76 37.16 0.21 0.37 16 4 C 0.05 0.51 5.31 -3.82 -0.02 0.49 16 5 N -0.53 -6.07 4.58 -226.84 -1.04 -7.11 16 6 C 0.05 0.66 4.58 -3.82 -0.02 0.65 16 7 C -0.09 -1.46 5.14 -26.73 -0.14 -1.60 16 8 C -0.11 -2.24 5.67 37.16 0.21 -2.03 16 9 S -0.13 -3.43 21.44 -107.50 -2.30 -5.74 16 10 C -0.52 -14.81 9.50 30.94 0.29 -14.52 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 13 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 14 Si 0.92 21.58 29.55 -169.99 -5.02 16.56 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.08 0.88 1.13 -67.88 -0.08 0.81 16 19 H 0.08 0.96 5.66 -51.93 -0.29 0.67 16 20 C -0.12 -1.07 4.23 -27.16 -0.11 -1.19 16 21 C -0.11 -0.91 5.75 -26.89 -0.15 -1.07 16 22 C -0.08 -0.68 6.45 37.21 0.24 -0.44 16 23 S -0.27 -2.94 22.33 -107.50 -2.40 -5.34 16 24 C -0.08 -0.83 5.66 37.21 0.21 -0.62 16 25 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.65 5.92 -51.93 -0.31 0.35 16 30 H 0.09 0.83 5.75 -51.93 -0.30 0.53 16 31 H 0.10 1.05 6.46 -51.93 -0.34 0.72 16 32 H 0.04 0.49 5.86 -51.93 -0.30 0.18 16 33 H 0.07 0.99 5.87 -51.93 -0.30 0.68 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.00 6.55 -51.93 -0.34 0.66 16 36 H 0.06 1.20 8.14 -51.91 -0.42 0.78 16 37 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 39 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 40 H 0.08 0.76 5.04 -51.93 -0.26 0.50 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.69 8.05 -51.93 -0.42 0.27 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 1.21 6.13 -51.93 -0.32 0.90 16 46 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 369.69 15.07 5.57 5.57 Total: -1.00 -30.62 369.69 -10.82 -41.44 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.80 Total: -0.27 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 1.66 Total: -15.89 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: -0.30 Total: -32.38 kcal Atomic # 8 Polarization: -3.72 SS G_CDS: -0.23 Total: -3.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -6.37 SS G_CDS: -4.71 Total: -11.08 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.62 -10.82 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433194465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.135 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds