Wall clock time and date at job start Tue Mar 31 2020 12:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81398 * 102.99919 * 2 1 4 4 H 1.09002 * 110.89065 * 302.57151 * 3 2 1 5 5 C 1.55162 * 111.00494 * 66.45316 * 3 2 1 6 6 C 1.54325 * 102.94306 * 153.61264 * 5 3 2 7 7 N 1.47024 * 107.26883 * 337.80767 * 6 5 3 8 8 C 1.34781 * 125.64867 * 178.90421 * 7 6 5 9 9 O 1.21276 * 120.00507 * 180.02562 * 8 7 6 10 10 C 1.50705 * 119.99677 * 0.02562 * 8 7 6 11 11 C 1.53001 * 109.46771 * 180.02562 * 10 8 7 12 12 H 1.08990 * 109.47601 * 55.00005 * 11 10 8 13 13 C 1.50697 * 109.46973 * 294.99699 * 11 10 8 14 14 H 1.07998 * 119.99903 * 121.31391 * 13 11 10 15 15 C 1.37882 * 120.00015 * 301.31082 * 13 11 10 16 16 N 1.31510 * 120.00075 * 6.00608 * 15 13 11 17 17 Si 1.86806 * 119.99718 * 186.00798 * 15 13 11 18 18 H 1.48494 * 109.47377 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46867 * 120.00456 * 17 15 13 20 20 H 1.48495 * 109.46860 * 239.99937 * 17 15 13 21 21 C 1.50707 * 109.46652 * 175.00145 * 11 10 8 22 22 C 1.38234 * 119.99355 * 211.42967 * 21 11 10 23 23 C 1.38237 * 119.99941 * 179.97438 * 22 21 11 24 24 C 1.38239 * 119.99595 * 359.97438 * 23 22 21 25 25 C 1.38229 * 120.00124 * 0.27201 * 24 23 22 26 26 C 1.38233 * 120.00362 * 31.40698 * 21 11 10 27 27 C 1.47419 * 108.70611 * 359.16634 * 7 6 5 28 28 H 1.09001 * 109.47464 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47496 * 299.99955 * 1 2 3 30 30 H 1.09007 * 109.47006 * 59.99993 * 1 2 3 31 31 H 1.09003 * 110.71947 * 35.25354 * 5 3 2 32 32 H 1.08992 * 110.87291 * 272.04404 * 5 3 2 33 33 H 1.09000 * 109.88354 * 218.39311 * 6 5 3 34 34 H 1.09001 * 110.01075 * 97.29373 * 6 5 3 35 35 H 1.08998 * 109.46964 * 60.00034 * 10 8 7 36 36 H 1.08998 * 109.47236 * 299.99945 * 10 8 7 37 37 H 0.97003 * 120.00186 * 179.97438 * 16 15 13 38 38 H 1.08003 * 120.00421 * 359.97438 * 22 21 11 39 39 H 1.07998 * 120.00093 * 180.02562 * 23 22 21 40 40 H 1.08005 * 119.99941 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.99896 * 179.72809 * 25 24 23 42 42 H 1.08000 * 119.99516 * 0.02562 * 26 21 11 43 43 H 1.08998 * 110.36921 * 142.73667 * 27 7 6 44 44 H 1.09003 * 110.36762 * 265.06196 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7753 2.2695 -0.8582 5 6 1.7833 2.4396 1.3279 6 6 2.7535 3.6336 1.4480 7 7 3.9349 3.3200 0.6310 8 6 5.0045 4.1213 0.4563 9 8 5.9263 3.7585 -0.2433 10 6 5.0549 5.4683 1.1304 11 6 6.3656 6.1703 0.7696 12 1 6.4630 6.2231 -0.3146 13 6 7.5245 5.3949 1.3410 14 1 8.2939 5.0130 0.6864 15 6 7.6026 5.1730 2.6996 16 7 6.6097 5.5335 3.4830 17 14 9.1189 4.3602 3.4275 18 1 10.0854 4.0539 2.3426 19 1 9.7508 5.2794 4.4079 20 1 8.7260 3.1018 4.1110 21 6 6.3628 7.5643 1.3422 22 6 7.0305 8.5819 0.6868 23 6 7.0275 9.8608 1.2117 24 6 6.3564 10.1221 2.3916 25 6 5.6930 9.1034 3.0496 26 6 5.6922 7.8255 2.5224 27 6 3.7531 1.9865 0.0293 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9089 1.7548 2.1666 32 1 0.7517 2.7858 1.2656 33 1 3.0479 3.7688 2.4888 34 1 2.2764 4.5407 1.0770 35 1 4.9985 5.3361 2.2109 36 1 4.2138 6.0746 0.7941 37 1 6.6645 5.3771 4.4387 38 1 7.5545 8.3779 -0.2353 39 1 7.5489 10.6559 0.6994 40 1 6.3537 11.1213 2.8015 41 1 5.1724 9.3066 3.9738 42 1 5.1706 7.0304 3.0344 43 1 4.1587 1.9682 -0.9823 44 1 4.2313 1.2243 0.6445 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452554693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:01 Heat of formation + Delta-G solvation = -4.507808 kcal Electronic energy + Delta-G solvation = -24776.914920 eV Core-core repulsion = 21399.408025 eV Total energy + Delta-G solvation = -3377.506895 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.46938 -38.25701 -36.83390 -34.20886 -31.55199 -31.01977 -29.83327 -29.37509 -28.92167 -28.19277 -25.90405 -23.49008 -22.26335 -21.45971 -21.26147 -19.79533 -18.49634 -16.94855 -16.73809 -16.03906 -15.75362 -15.39932 -15.07503 -14.44684 -14.07709 -13.98154 -13.82075 -13.77254 -13.60301 -13.44537 -12.99780 -12.63015 -12.36663 -12.32426 -12.20499 -11.96218 -11.63797 -11.48249 -11.35742 -11.18514 -11.04759 -10.91829 -10.73376 -10.38722 -10.20113 -10.04893 -9.95609 -9.30583 -9.20827 -8.74459 -8.43371 -8.12475 -7.87202 -7.81276 -7.45278 -5.99904 -4.07442 1.41863 2.34225 2.47437 2.56222 3.30810 3.38629 3.45420 3.58177 3.70815 4.28040 4.44095 4.55182 4.84643 4.88378 4.91071 4.95710 5.22317 5.24199 5.25098 5.43005 5.58299 5.64752 5.79789 5.84350 5.89108 5.96085 5.98666 6.02206 6.06002 6.38314 6.44302 6.59320 6.68295 6.76931 6.80022 7.12751 7.17573 7.27033 7.47918 7.53344 7.68918 7.96407 8.06580 8.17825 8.20266 8.35304 8.90357 9.15215 9.56325 10.95026 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.003657 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.441017 B = 7655.043474 C = 8551.213278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.242 6.242 3 C -0.074 4.074 4 H 0.098 0.902 5 C -0.125 4.125 6 C 0.109 3.891 7 N -0.632 5.632 8 C 0.543 3.457 9 O -0.524 6.524 10 C -0.133 4.133 11 C 0.087 3.913 12 H 0.036 0.964 13 C -0.470 4.470 14 H 0.061 0.939 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.286 1.286 21 C -0.031 4.031 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.154 4.154 25 C -0.144 4.144 26 C -0.076 4.076 27 C 0.134 3.866 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.138 0.862 36 H 0.050 0.950 37 H 0.260 0.740 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.148 0.852 43 H 0.081 0.919 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 -3.405 -2.485 14.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.015 6.015 3 C -0.204 4.204 4 H 0.117 0.883 5 C -0.165 4.165 6 C -0.016 4.016 7 N -0.371 5.371 8 C 0.334 3.666 9 O -0.398 6.398 10 C -0.173 4.173 11 C 0.067 3.933 12 H 0.055 0.945 13 C -0.507 4.507 14 H 0.079 0.921 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.031 4.031 22 C -0.150 4.150 23 C -0.160 4.160 24 C -0.172 4.172 25 C -0.162 4.162 26 C -0.094 4.094 27 C 0.009 3.991 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.165 0.835 43 H 0.100 0.900 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.913 -4.455 -2.714 13.926 hybrid contribution 0.009 0.614 0.702 0.933 sum -12.903 -3.841 -2.012 13.612 Atomic orbital electron populations 1.23376 0.94413 1.06357 1.04981 1.86897 1.06981 1.09693 1.97879 1.24366 1.00685 0.93907 1.01404 0.88320 1.23022 0.99376 0.97625 0.96430 1.21880 0.86015 0.97024 0.96696 1.48720 1.19920 1.17667 1.50784 1.20983 0.79035 0.86530 0.80010 1.90624 1.34955 1.75169 1.39017 1.22000 0.99319 0.90438 1.05495 1.17660 0.92679 0.87980 0.94934 0.94520 1.21060 1.07233 1.30482 0.91941 0.92072 1.24863 0.96386 0.95568 0.97051 1.69542 1.30527 1.48445 1.04575 0.86517 0.83588 0.78855 0.79070 1.19785 1.21093 1.21219 1.20346 0.93004 0.95140 0.94631 1.20929 1.00847 0.92836 1.00367 1.20804 1.01561 0.96584 0.97091 1.20786 1.01319 0.98161 0.96926 1.21080 1.01392 0.94173 0.99567 1.21604 0.98299 0.95089 0.94408 1.21659 0.90877 0.86506 1.00037 0.88166 0.90365 0.90553 0.89401 0.90179 0.90715 0.91568 0.84489 0.93197 0.92923 0.87607 0.88053 0.88279 0.88054 0.83479 0.90033 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.64 101.05 1.08 0.20 16 2 S -0.24 -2.63 21.84 -107.50 -2.35 -4.98 16 3 C -0.07 -0.84 3.55 -24.70 -0.09 -0.93 16 4 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 5 C -0.12 -1.28 6.32 -24.89 -0.16 -1.43 16 6 C 0.11 1.44 6.49 -3.06 -0.02 1.42 16 7 N -0.63 -10.94 3.33 -170.65 -0.57 -11.51 16 8 C 0.54 11.82 7.60 -10.98 -0.08 11.74 16 9 O -0.52 -13.33 15.24 5.56 0.08 -13.25 16 10 C -0.13 -2.86 3.41 -27.88 -0.09 -2.95 16 11 C 0.09 2.09 1.98 -92.92 -0.18 1.91 16 12 H 0.04 0.90 7.89 -51.93 -0.41 0.49 16 13 C -0.47 -12.68 7.27 -34.44 -0.25 -12.93 16 14 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 15 C 0.06 1.60 5.14 -17.82 -0.09 1.50 16 16 N -0.89 -22.53 7.75 55.43 0.43 -22.10 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 18 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.03 -0.70 4.68 -104.62 -0.49 -1.19 16 22 C -0.13 -2.80 9.70 -39.58 -0.38 -3.18 16 23 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 24 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 25 C -0.14 -2.84 10.05 -39.59 -0.40 -3.24 16 26 C -0.08 -1.65 7.55 -39.59 -0.30 -1.95 16 27 C 0.13 2.04 6.39 -2.65 -0.02 2.02 16 28 H 0.10 0.61 8.14 -51.92 -0.42 0.18 16 29 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 31 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.14 3.12 4.66 -51.93 -0.24 2.88 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 38 H 0.11 2.13 8.06 -52.48 -0.42 1.71 16 39 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 41 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 42 H 0.15 3.30 4.98 -52.49 -0.26 3.04 16 43 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 44 H 0.07 1.12 8.03 -51.93 -0.42 0.70 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -29.50 364.98 -10.98 -40.49 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.78 Total: 4.69 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -2.28 Total: -15.41 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: -0.14 Total: -33.61 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.35 Total: -4.98 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.50 -10.98 -40.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452554693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.978 kcal (2) G-P(sol) polarization free energy of solvation -29.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds