Wall clock time and date at job start Tue Mar 31 2020 12:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81398 * 102.99919 * 2 1 4 4 H 1.09002 * 110.89065 * 302.57151 * 3 2 1 5 5 C 1.55162 * 111.00494 * 66.45316 * 3 2 1 6 6 C 1.54325 * 102.94306 * 153.61264 * 5 3 2 7 7 N 1.47024 * 107.26883 * 337.80767 * 6 5 3 8 8 C 1.34781 * 125.64867 * 178.90421 * 7 6 5 9 9 O 1.21276 * 120.00507 * 180.02562 * 8 7 6 10 10 C 1.50705 * 119.99677 * 0.02562 * 8 7 6 11 11 C 1.53001 * 109.46771 * 180.02562 * 10 8 7 12 12 H 1.08990 * 109.47601 * 55.00005 * 11 10 8 13 13 C 1.50697 * 109.46973 * 294.99699 * 11 10 8 14 14 H 1.07998 * 119.99903 * 121.31391 * 13 11 10 15 15 C 1.37882 * 120.00015 * 301.31082 * 13 11 10 16 16 N 1.31510 * 120.00075 * 6.00608 * 15 13 11 17 17 Si 1.86806 * 119.99718 * 186.00798 * 15 13 11 18 18 H 1.48494 * 109.47377 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46867 * 120.00456 * 17 15 13 20 20 H 1.48495 * 109.46860 * 239.99937 * 17 15 13 21 21 C 1.50707 * 109.46652 * 175.00145 * 11 10 8 22 22 C 1.38234 * 119.99355 * 211.42967 * 21 11 10 23 23 C 1.38237 * 119.99941 * 179.97438 * 22 21 11 24 24 C 1.38239 * 119.99595 * 359.97438 * 23 22 21 25 25 C 1.38229 * 120.00124 * 0.27201 * 24 23 22 26 26 C 1.38233 * 120.00362 * 31.40698 * 21 11 10 27 27 C 1.47419 * 108.70611 * 359.16634 * 7 6 5 28 28 H 1.09001 * 109.47464 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47496 * 299.99955 * 1 2 3 30 30 H 1.09007 * 109.47006 * 59.99993 * 1 2 3 31 31 H 1.09003 * 110.71947 * 35.25354 * 5 3 2 32 32 H 1.08992 * 110.87291 * 272.04404 * 5 3 2 33 33 H 1.09000 * 109.88354 * 218.39311 * 6 5 3 34 34 H 1.09001 * 110.01075 * 97.29373 * 6 5 3 35 35 H 1.08998 * 109.46964 * 60.00034 * 10 8 7 36 36 H 1.08998 * 109.47236 * 299.99945 * 10 8 7 37 37 H 0.97003 * 120.00186 * 179.97438 * 16 15 13 38 38 H 1.08003 * 120.00421 * 359.97438 * 22 21 11 39 39 H 1.07998 * 120.00093 * 180.02562 * 23 22 21 40 40 H 1.08005 * 119.99941 * 180.02562 * 24 23 22 41 41 H 1.08004 * 119.99896 * 179.72809 * 25 24 23 42 42 H 1.08000 * 119.99516 * 0.02562 * 26 21 11 43 43 H 1.08998 * 110.36921 * 142.73667 * 27 7 6 44 44 H 1.09003 * 110.36762 * 265.06196 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7753 2.2695 -0.8582 5 6 1.7833 2.4396 1.3279 6 6 2.7535 3.6336 1.4480 7 7 3.9349 3.3200 0.6310 8 6 5.0045 4.1213 0.4563 9 8 5.9263 3.7585 -0.2433 10 6 5.0549 5.4683 1.1304 11 6 6.3656 6.1703 0.7696 12 1 6.4630 6.2231 -0.3146 13 6 7.5245 5.3949 1.3410 14 1 8.2939 5.0130 0.6864 15 6 7.6026 5.1730 2.6996 16 7 6.6097 5.5335 3.4830 17 14 9.1189 4.3602 3.4275 18 1 10.0854 4.0539 2.3426 19 1 9.7508 5.2794 4.4079 20 1 8.7260 3.1018 4.1110 21 6 6.3628 7.5643 1.3422 22 6 7.0305 8.5819 0.6868 23 6 7.0275 9.8608 1.2117 24 6 6.3564 10.1221 2.3916 25 6 5.6930 9.1034 3.0496 26 6 5.6922 7.8255 2.5224 27 6 3.7531 1.9865 0.0293 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9089 1.7548 2.1666 32 1 0.7517 2.7858 1.2656 33 1 3.0479 3.7688 2.4888 34 1 2.2764 4.5407 1.0770 35 1 4.9985 5.3361 2.2109 36 1 4.2138 6.0746 0.7941 37 1 6.6645 5.3771 4.4387 38 1 7.5545 8.3779 -0.2353 39 1 7.5489 10.6559 0.6994 40 1 6.3537 11.1213 2.8015 41 1 5.1724 9.3066 3.9738 42 1 5.1706 7.0304 3.0344 43 1 4.1587 1.9682 -0.9823 44 1 4.2313 1.2243 0.6445 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452554693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:00 Heat of formation + Delta-G solvation = -18.752313 kcal Electronic energy + Delta-G solvation = -24777.532608 eV Core-core repulsion = 21399.408025 eV Total energy + Delta-G solvation = -3378.124583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97633 -39.81533 -38.30932 -36.03700 -33.10940 -32.66316 -31.40341 -30.51980 -29.70078 -29.60837 -27.74098 -25.02740 -23.81346 -22.93650 -22.37520 -21.43556 -20.02286 -18.40257 -18.11683 -17.73369 -17.16424 -16.90795 -16.60697 -16.06385 -15.55677 -15.34412 -15.22894 -14.85270 -14.69662 -14.57165 -14.21618 -13.94583 -13.78435 -13.71088 -13.46542 -13.28506 -13.16216 -13.09509 -12.90753 -12.81503 -12.67430 -12.26473 -12.22392 -11.97374 -11.90206 -11.73881 -11.09383 -11.06652 -10.84223 -10.57575 -10.35701 -9.56846 -9.40665 -9.12255 -8.71476 -7.98244 -6.11830 0.58454 0.87234 0.98560 1.33889 1.37625 1.47440 1.60841 1.95096 2.26604 2.43859 3.17728 3.26849 3.35654 3.55329 3.93151 4.15234 4.21201 4.27684 4.33695 4.40743 4.41378 4.42140 4.50564 4.57060 4.66963 4.72694 4.80154 4.81334 4.87098 4.90524 4.95947 5.07312 5.12446 5.14383 5.30703 5.50016 5.52949 5.63229 5.68272 5.90899 5.94322 6.10075 6.36374 6.41145 6.57125 6.66069 6.83045 7.47641 7.51851 8.92050 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.003657 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.441017 B = 7655.043474 C = 8551.213278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.287 6.287 3 C -0.057 4.057 4 H 0.110 0.890 5 C -0.110 4.110 6 C 0.099 3.901 7 N -0.630 5.630 8 C 0.535 3.465 9 O -0.576 6.576 10 C -0.119 4.119 11 C 0.088 3.912 12 H 0.012 0.988 13 C -0.494 4.494 14 H 0.026 0.974 15 C 0.037 3.963 16 N -0.884 5.884 17 Si 0.928 3.072 18 H -0.287 1.287 19 H -0.276 1.276 20 H -0.282 1.282 21 C -0.055 4.055 22 C -0.152 4.152 23 C -0.140 4.140 24 C -0.147 4.147 25 C -0.147 4.147 26 C -0.088 4.088 27 C 0.128 3.872 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.071 0.929 37 H 0.263 0.737 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.138 0.862 43 H 0.064 0.936 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.881 -2.103 -1.054 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.060 6.060 3 C -0.186 4.186 4 H 0.129 0.871 5 C -0.149 4.149 6 C -0.024 4.024 7 N -0.367 5.367 8 C 0.326 3.674 9 O -0.454 6.454 10 C -0.159 4.159 11 C 0.068 3.932 12 H 0.030 0.970 13 C -0.531 4.531 14 H 0.044 0.956 15 C -0.163 4.163 16 N -0.523 5.523 17 Si 0.756 3.244 18 H -0.213 1.213 19 H -0.202 1.202 20 H -0.208 1.208 21 C -0.055 4.055 22 C -0.170 4.170 23 C -0.157 4.157 24 C -0.165 4.165 25 C -0.165 4.165 26 C -0.106 4.106 27 C 0.004 3.996 28 H 0.131 0.869 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.147 0.853 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.082 0.918 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.685 -3.155 -1.253 16.048 hybrid contribution 0.796 0.213 0.235 0.856 sum -14.889 -2.943 -1.017 15.211 Atomic orbital electron populations 1.23467 0.90176 1.07653 1.06341 1.87126 1.11567 1.09287 1.98029 1.24162 0.97175 0.94600 1.02684 0.87135 1.23019 1.00368 0.95976 0.95547 1.22204 0.85074 0.99414 0.95721 1.48651 1.19850 1.17734 1.50441 1.21044 0.79516 0.87173 0.79649 1.90590 1.37229 1.76258 1.41339 1.21782 0.98757 0.90648 1.04673 1.17543 0.93017 0.89254 0.93343 0.96990 1.20988 1.07787 1.32226 0.92147 0.95572 1.25196 0.98011 0.96026 0.97052 1.69619 1.30289 1.47830 1.04527 0.85959 0.81684 0.78564 0.78152 1.21284 1.20201 1.20796 1.20290 0.94830 0.94653 0.95751 1.21105 1.01222 0.93916 1.00745 1.21164 1.01063 0.96202 0.97318 1.21226 0.99552 0.99604 0.96151 1.21396 1.01258 0.93398 1.00411 1.21537 0.98746 0.96149 0.94207 1.21720 0.94272 0.85054 0.98548 0.86895 0.88817 0.89332 0.89286 0.86370 0.91252 0.89716 0.85309 0.91048 0.92677 0.87889 0.84925 0.84509 0.85450 0.84466 0.91796 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.64 113.37 1.21 0.03 16 2 S -0.29 -5.84 21.84 -56.49 -1.23 -7.08 16 3 C -0.06 -1.21 3.55 31.91 0.11 -1.10 16 4 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 5 C -0.11 -1.94 6.32 31.79 0.20 -1.74 16 6 C 0.10 2.49 6.49 86.73 0.56 3.05 16 7 N -0.63 -22.27 3.33 -812.22 -2.70 -24.97 16 8 C 0.53 24.39 7.60 87.66 0.67 25.06 16 9 O -0.58 -31.43 15.24 -3.02 -0.05 -31.47 16 10 C -0.12 -5.29 3.41 29.85 0.10 -5.18 16 11 C 0.09 4.45 1.98 -12.28 -0.02 4.42 16 12 H 0.01 0.63 7.89 -2.39 -0.02 0.61 16 13 C -0.49 -28.13 7.27 25.60 0.19 -27.95 16 14 H 0.03 1.62 7.82 -2.91 -0.02 1.59 16 15 C 0.04 1.98 5.14 84.66 0.44 2.41 16 16 N -0.88 -45.00 7.75 21.45 0.17 -44.83 16 17 Si 0.93 45.12 29.54 68.60 2.03 47.15 16 18 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 20 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 21 C -0.05 -2.54 4.68 -19.86 -0.09 -2.63 16 22 C -0.15 -6.47 9.70 22.27 0.22 -6.26 16 23 C -0.14 -5.00 10.05 22.27 0.22 -4.78 16 24 C -0.15 -4.98 10.05 22.27 0.22 -4.76 16 25 C -0.15 -5.40 10.05 22.27 0.22 -5.17 16 26 C -0.09 -3.79 7.55 22.27 0.17 -3.62 16 27 C 0.13 4.03 6.39 86.78 0.55 4.58 16 28 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.61 8.03 -2.39 -0.02 1.59 16 32 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.13 5.99 4.66 -2.39 -0.01 5.98 16 36 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.26 12.88 8.31 -92.71 -0.77 12.11 16 38 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 39 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 41 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 42 H 0.14 6.11 4.98 -2.91 -0.01 6.10 16 43 H 0.06 2.21 8.04 -2.39 -0.02 2.19 16 44 H 0.06 1.88 8.03 -2.39 -0.02 1.86 16 Total: -1.00 -67.86 364.98 4.15 -63.71 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.98 Total: 21.12 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 4.96 Total: -23.63 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -2.54 Total: -69.80 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.05 Total: -31.47 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: -5.84 SS G_CDS: -1.23 Total: -7.08 kcal Total: -67.86 4.15 -63.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452554693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.959 kcal (2) G-P(sol) polarization free energy of solvation -67.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds