Wall clock time and date at job start Tue Mar 31 2020 12:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00225 * 2 1 4 4 C 1.52998 * 109.47194 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47002 * 64.99943 * 4 3 2 6 6 C 1.36933 * 120.00056 * 269.99635 * 5 4 3 7 7 H 1.08003 * 120.00146 * 146.00763 * 6 5 4 8 8 C 1.38811 * 120.00103 * 326.01527 * 6 5 4 9 9 N 1.31617 * 120.00069 * 336.72035 * 8 6 5 10 10 Si 1.86805 * 120.00065 * 156.72941 * 8 6 5 11 11 H 1.48493 * 109.47434 * 59.99568 * 10 8 6 12 12 H 1.48497 * 109.46728 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46971 * 299.99200 * 10 8 6 14 14 C 1.46502 * 120.00011 * 90.00222 * 5 4 3 15 15 C 1.50697 * 109.47178 * 89.10450 * 14 5 4 16 16 C 1.34724 * 125.66098 * 90.00379 * 15 14 5 17 17 C 1.40947 * 107.03055 * 180.02562 * 16 15 14 18 18 C 1.35955 * 106.74152 * 359.97438 * 17 16 15 19 19 C 1.47781 * 125.93279 * 179.97438 * 18 17 16 20 20 C 1.39580 * 120.15357 * 309.97423 * 19 18 17 21 21 C 1.37951 * 119.86994 * 180.02562 * 20 19 18 22 22 C 1.38386 * 120.20082 * 0.02562 * 21 20 19 23 23 C 1.38307 * 120.31590 * 359.71553 * 22 21 20 24 24 C 1.38206 * 120.12021 * 0.56078 * 23 22 21 25 25 F 1.35095 * 120.09548 * 179.71971 * 24 23 22 26 26 O 1.34325 * 125.66556 * 270.28116 * 15 14 5 27 27 H 1.09001 * 109.46867 * 300.00178 * 1 2 3 28 28 H 1.08997 * 109.47471 * 59.99844 * 1 2 3 29 29 H 1.08996 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47104 * 60.00063 * 3 2 1 31 31 H 1.09009 * 109.47034 * 300.00333 * 3 2 1 32 32 H 1.08997 * 109.47485 * 305.00014 * 4 3 2 33 33 H 1.08996 * 109.47063 * 184.99925 * 4 3 2 34 34 H 0.97000 * 120.00229 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47135 * 329.10395 * 14 5 4 36 36 H 1.09005 * 109.47126 * 209.10815 * 14 5 4 37 37 H 1.07997 * 126.48272 * 359.97438 * 16 15 14 38 38 H 1.07999 * 126.63090 * 180.02562 * 17 16 15 39 39 H 1.07996 * 120.06552 * 0.04952 * 20 19 18 40 40 H 1.08002 * 119.89720 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.84090 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.93566 * 180.30225 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.0967 -0.7971 -1.3369 7 1 3.8766 -1.3025 -2.2657 8 6 4.5023 -1.5276 -0.2285 9 7 5.1941 -0.9441 0.7272 10 14 4.0665 -3.3391 -0.0932 11 1 4.6512 -4.0761 -1.2422 12 1 4.6125 -3.8861 1.1747 13 1 2.5898 -3.4951 -0.1048 14 6 4.2864 1.4005 -2.4149 15 6 5.7391 1.7990 -2.3730 16 6 6.7582 1.1121 -2.9249 17 6 7.9381 1.8330 -2.6512 18 6 7.5697 2.9318 -1.9404 19 6 8.4783 3.9806 -1.4320 20 6 9.6206 3.6294 -0.7110 21 6 10.4645 4.6132 -0.2387 22 6 10.1814 5.9466 -0.4773 23 6 9.0545 6.3034 -1.1954 24 6 8.1970 5.3289 -1.6698 25 9 7.0934 5.6782 -2.3663 26 8 6.2336 2.8953 -1.7746 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8515 0.5681 0.8409 33 1 3.9785 2.1764 0.0889 34 1 5.4778 -1.4547 1.5016 35 1 3.6636 2.2949 -2.3959 36 1 4.0895 0.8401 -3.3289 37 1 6.6850 0.1842 -3.4726 38 1 8.9409 1.5648 -2.9493 39 1 9.8437 2.5895 -0.5235 40 1 11.3483 4.3420 0.3196 41 1 10.8458 6.7121 -0.1045 42 1 8.8421 7.3457 -1.3822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453603733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:13 Heat of formation + Delta-G solvation = -21.981079 kcal Electronic energy + Delta-G solvation = -26610.477596 eV Core-core repulsion = 22665.999827 eV Total energy + Delta-G solvation = -3944.477769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.77101 -41.70296 -38.79318 -37.21434 -35.39171 -32.62663 -32.10767 -31.24584 -30.59623 -29.57312 -27.78390 -25.65389 -25.37378 -23.34270 -22.83060 -22.22542 -20.96457 -20.38066 -19.45101 -17.77586 -16.87927 -16.62724 -16.28322 -15.76039 -15.52371 -15.27572 -15.09559 -14.90679 -14.56942 -14.22495 -13.99307 -13.75752 -13.40452 -13.26557 -13.12685 -12.62621 -12.45338 -12.22293 -12.10633 -11.87444 -11.73603 -11.25305 -11.18147 -11.01673 -10.80032 -10.73854 -10.65042 -10.14855 -10.03082 -9.73979 -9.38234 -9.03476 -8.82659 -8.78363 -8.45051 -7.43475 -6.68554 -5.75490 -3.28328 0.90818 1.13711 2.45383 3.31641 3.42796 3.44737 3.49480 3.56793 3.78069 4.22444 4.55588 4.69653 4.70084 4.78675 5.00127 5.13698 5.27125 5.37803 5.51592 5.67446 5.72064 5.76273 5.79908 5.82457 5.97910 5.98782 6.08020 6.13990 6.18003 6.22773 6.27116 6.28604 6.40570 6.51356 6.66188 6.69204 6.74213 6.78000 6.88496 7.30086 7.67013 7.83584 7.95782 8.07390 8.51092 9.15294 9.80254 10.32395 11.25915 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.003637 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.383006 B = 7696.624474 C = 8436.356807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.050 3.950 4 C 0.137 3.863 5 N -0.558 5.558 6 C -0.248 4.248 7 H 0.063 0.937 8 C 0.023 3.977 9 N -0.884 5.884 10 Si 0.901 3.099 11 H -0.284 1.284 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.208 3.792 15 C 0.022 3.978 16 C -0.218 4.218 17 C -0.169 4.169 18 C -0.027 4.027 19 C -0.028 4.028 20 C -0.069 4.069 21 C -0.130 4.130 22 C -0.093 4.093 23 C -0.157 4.157 24 C 0.113 3.887 25 F -0.131 7.131 26 O -0.167 6.167 27 H 0.026 0.974 28 H 0.029 0.971 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.110 0.890 33 H 0.042 0.958 34 H 0.255 0.745 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 11.699 -2.662 13.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.029 4.029 4 C 0.011 3.989 5 N -0.275 5.275 6 C -0.377 4.377 7 H 0.081 0.919 8 C -0.177 4.177 9 N -0.526 5.526 10 Si 0.730 3.270 11 H -0.210 1.210 12 H -0.219 1.219 13 H -0.205 1.205 14 C 0.081 3.919 15 C -0.033 4.033 16 C -0.238 4.238 17 C -0.189 4.189 18 C -0.077 4.077 19 C -0.029 4.029 20 C -0.088 4.088 21 C -0.149 4.149 22 C -0.111 4.111 23 C -0.176 4.176 24 C 0.093 3.907 25 F -0.109 7.109 26 O -0.062 6.062 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.045 0.955 31 H 0.047 0.953 32 H 0.127 0.873 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.160 0.840 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.386 11.678 -2.358 13.074 hybrid contribution -0.400 -0.805 0.076 0.902 sum 4.986 10.873 -2.282 12.177 Atomic orbital electron populations 1.22632 0.84255 1.01468 0.98415 1.88228 1.16538 1.27563 1.94823 1.23325 0.98373 0.84200 0.97036 1.21149 0.87806 0.97077 0.92899 1.44059 1.72372 1.02630 1.08484 1.18899 1.39526 0.80859 0.98451 0.91893 1.25012 0.96289 0.97891 0.98538 1.69970 1.35402 1.36327 1.10913 0.86413 0.78817 0.85005 0.76725 1.21047 1.21912 1.20520 1.19941 0.83729 0.94429 0.93843 1.24874 0.99856 0.84778 0.93743 1.21297 0.91366 1.02463 1.08686 1.21604 0.99456 0.94914 1.02888 1.19812 0.82076 0.98605 1.07158 1.17877 0.95204 0.89140 1.00719 1.21201 0.92472 1.00704 0.94383 1.21118 1.00155 0.92547 1.01031 1.21055 0.96231 0.96548 0.97313 1.21055 0.95825 0.99184 1.01541 1.17861 0.84985 0.92428 0.95405 1.91519 1.50647 1.92494 1.76252 1.84092 1.19926 1.41128 1.61089 0.95563 0.95247 0.90745 0.95494 0.95332 0.87300 0.93985 0.93550 0.92962 0.89928 0.84017 0.84432 0.84424 0.84975 0.85023 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.35 -7.83 10.18 -35.23 -0.36 -8.19 16 3 C 0.05 1.02 6.28 37.16 0.23 1.25 16 4 C 0.14 3.25 5.73 -4.04 -0.02 3.23 16 5 N -0.56 -13.68 2.41 -174.61 -0.42 -14.10 16 6 C -0.25 -6.65 8.98 -15.06 -0.14 -6.79 16 7 H 0.06 1.68 7.93 -52.48 -0.42 1.26 16 8 C 0.02 0.64 4.94 -17.43 -0.09 0.56 16 9 N -0.88 -25.55 11.33 55.49 0.63 -24.92 16 10 Si 0.90 22.07 29.61 -169.99 -5.03 17.03 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.21 4.41 6.19 -5.19 -0.03 4.38 16 15 C 0.02 0.49 6.90 -35.55 -0.25 0.25 16 16 C -0.22 -4.55 10.78 -39.80 -0.43 -4.98 16 17 C -0.17 -3.23 10.75 -39.38 -0.42 -3.66 16 18 C -0.03 -0.53 6.37 -36.50 -0.23 -0.76 16 19 C -0.03 -0.46 5.80 -104.92 -0.61 -1.07 16 20 C -0.07 -0.94 9.70 -39.19 -0.38 -1.32 16 21 C -0.13 -1.36 10.03 -39.63 -0.40 -1.76 16 22 C -0.09 -0.91 10.04 -39.50 -0.40 -1.30 16 23 C -0.16 -1.81 10.01 -39.57 -0.40 -2.21 16 24 C 0.11 1.71 7.28 -39.02 -0.28 1.43 16 25 F -0.13 -2.21 16.81 2.25 0.04 -2.17 16 26 O -0.17 -3.69 10.65 4.60 0.05 -3.64 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.03 0.55 8.14 -51.92 -0.42 0.12 16 32 H 0.11 2.97 5.33 -51.93 -0.28 2.70 16 33 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 34 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 36 H 0.08 1.63 8.03 -51.93 -0.42 1.21 16 37 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 38 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -31.90 367.92 -8.01 -39.91 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.73 Total: 1.67 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.72 Total: -11.14 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.21 Total: -39.02 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.31 Total: -11.83 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.90 -8.01 -39.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453603733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.933 kcal (2) G-P(sol) polarization free energy of solvation -31.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds