Wall clock time and date at job start Tue Mar 31 2020 12:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00225 * 2 1 4 4 C 1.52998 * 109.47194 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47002 * 64.99943 * 4 3 2 6 6 C 1.36933 * 120.00056 * 269.99635 * 5 4 3 7 7 H 1.08003 * 120.00146 * 146.00763 * 6 5 4 8 8 C 1.38811 * 120.00103 * 326.01527 * 6 5 4 9 9 N 1.31617 * 120.00069 * 336.72035 * 8 6 5 10 10 Si 1.86805 * 120.00065 * 156.72941 * 8 6 5 11 11 H 1.48493 * 109.47434 * 59.99568 * 10 8 6 12 12 H 1.48497 * 109.46728 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46971 * 299.99200 * 10 8 6 14 14 C 1.46502 * 120.00011 * 90.00222 * 5 4 3 15 15 C 1.50697 * 109.47178 * 89.10450 * 14 5 4 16 16 C 1.34724 * 125.66098 * 90.00379 * 15 14 5 17 17 C 1.40947 * 107.03055 * 180.02562 * 16 15 14 18 18 C 1.35955 * 106.74152 * 359.97438 * 17 16 15 19 19 C 1.47781 * 125.93279 * 179.97438 * 18 17 16 20 20 C 1.39580 * 120.15357 * 309.97423 * 19 18 17 21 21 C 1.37951 * 119.86994 * 180.02562 * 20 19 18 22 22 C 1.38386 * 120.20082 * 0.02562 * 21 20 19 23 23 C 1.38307 * 120.31590 * 359.71553 * 22 21 20 24 24 C 1.38206 * 120.12021 * 0.56078 * 23 22 21 25 25 F 1.35095 * 120.09548 * 179.71971 * 24 23 22 26 26 O 1.34325 * 125.66556 * 270.28116 * 15 14 5 27 27 H 1.09001 * 109.46867 * 300.00178 * 1 2 3 28 28 H 1.08997 * 109.47471 * 59.99844 * 1 2 3 29 29 H 1.08996 * 109.47130 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47104 * 60.00063 * 3 2 1 31 31 H 1.09009 * 109.47034 * 300.00333 * 3 2 1 32 32 H 1.08997 * 109.47485 * 305.00014 * 4 3 2 33 33 H 1.08996 * 109.47063 * 184.99925 * 4 3 2 34 34 H 0.97000 * 120.00229 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47135 * 329.10395 * 14 5 4 36 36 H 1.09005 * 109.47126 * 209.10815 * 14 5 4 37 37 H 1.07997 * 126.48272 * 359.97438 * 16 15 14 38 38 H 1.07999 * 126.63090 * 180.02562 * 17 16 15 39 39 H 1.07996 * 120.06552 * 0.04952 * 20 19 18 40 40 H 1.08002 * 119.89720 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.84090 * 179.97438 * 22 21 20 42 42 H 1.07998 * 119.93566 * 180.30225 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.0967 -0.7971 -1.3369 7 1 3.8766 -1.3025 -2.2657 8 6 4.5023 -1.5276 -0.2285 9 7 5.1941 -0.9441 0.7272 10 14 4.0665 -3.3391 -0.0932 11 1 4.6512 -4.0761 -1.2422 12 1 4.6125 -3.8861 1.1747 13 1 2.5898 -3.4951 -0.1048 14 6 4.2864 1.4005 -2.4149 15 6 5.7391 1.7990 -2.3730 16 6 6.7582 1.1121 -2.9249 17 6 7.9381 1.8330 -2.6512 18 6 7.5697 2.9318 -1.9404 19 6 8.4783 3.9806 -1.4320 20 6 9.6206 3.6294 -0.7110 21 6 10.4645 4.6132 -0.2387 22 6 10.1814 5.9466 -0.4773 23 6 9.0545 6.3034 -1.1954 24 6 8.1970 5.3289 -1.6698 25 9 7.0934 5.6782 -2.3663 26 8 6.2336 2.8953 -1.7746 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8515 0.5681 0.8409 33 1 3.9785 2.1764 0.0889 34 1 5.4778 -1.4547 1.5016 35 1 3.6636 2.2949 -2.3959 36 1 4.0895 0.8401 -3.3289 37 1 6.6850 0.1842 -3.4726 38 1 8.9409 1.5648 -2.9493 39 1 9.8437 2.5895 -0.5235 40 1 11.3483 4.3420 0.3196 41 1 10.8458 6.7121 -0.1045 42 1 8.8421 7.3457 -1.3822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453603733.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:12 Heat of formation + Delta-G solvation = -39.304782 kcal Electronic energy + Delta-G solvation = -26611.228808 eV Core-core repulsion = 22665.999827 eV Total energy + Delta-G solvation = -3945.228981 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.95649 -43.29475 -39.77106 -38.86709 -37.17248 -34.03802 -33.83132 -32.89889 -31.57152 -31.12156 -29.43598 -27.20627 -26.92043 -24.96839 -24.00321 -23.45232 -22.59666 -21.99842 -21.05251 -18.97958 -18.70232 -17.92972 -17.52120 -17.28181 -16.89000 -16.73837 -16.62358 -16.37682 -16.13224 -15.62338 -15.47218 -15.23114 -15.03103 -14.82421 -14.25627 -14.06716 -13.89184 -13.68502 -13.44600 -13.29876 -12.97639 -12.85021 -12.73668 -12.65441 -12.56000 -12.34292 -12.08957 -12.01635 -11.91313 -11.57244 -10.79029 -10.50139 -10.35578 -10.25594 -9.82504 -8.95690 -8.64804 -7.80043 -5.36023 -0.15740 0.18684 0.95357 1.47278 1.52329 1.58733 1.79886 2.06684 2.56938 2.66185 3.18352 3.20196 3.34922 3.58311 3.69859 3.78680 4.06576 4.14880 4.20393 4.31841 4.33108 4.40265 4.52677 4.53967 4.62732 4.69472 4.70704 4.75307 4.82498 4.89782 4.92282 4.99618 5.02720 5.06287 5.14846 5.25931 5.34106 5.42887 5.68558 5.72256 5.77118 5.87225 6.34009 6.41513 6.64188 7.15001 7.82226 8.32715 9.18674 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.003637 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.383006 B = 7696.624474 C = 8436.356807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.060 3.940 4 C 0.138 3.862 5 N -0.571 5.571 6 C -0.245 4.245 7 H 0.061 0.939 8 C -0.022 4.022 9 N -0.917 5.917 10 Si 0.952 3.048 11 H -0.276 1.276 12 H -0.298 1.298 13 H -0.281 1.281 14 C 0.211 3.789 15 C -0.006 4.006 16 C -0.226 4.226 17 C -0.182 4.182 18 C -0.025 4.025 19 C -0.069 4.069 20 C -0.079 4.079 21 C -0.119 4.119 22 C -0.074 4.074 23 C -0.151 4.151 24 C 0.084 3.916 25 F -0.150 7.150 26 O -0.189 6.189 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.038 0.962 34 H 0.248 0.752 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.146 0.854 38 H 0.165 0.835 39 H 0.136 0.864 40 H 0.170 0.830 41 H 0.178 0.822 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.726 13.369 -2.417 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.019 4.019 4 C 0.011 3.989 5 N -0.289 5.289 6 C -0.375 4.375 7 H 0.078 0.922 8 C -0.219 4.219 9 N -0.561 5.561 10 Si 0.781 3.219 11 H -0.202 1.202 12 H -0.224 1.224 13 H -0.207 1.207 14 C 0.084 3.916 15 C -0.060 4.060 16 C -0.246 4.246 17 C -0.201 4.201 18 C -0.074 4.074 19 C -0.070 4.070 20 C -0.097 4.097 21 C -0.136 4.136 22 C -0.091 4.091 23 C -0.170 4.170 24 C 0.065 3.935 25 F -0.129 7.129 26 O -0.086 6.086 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.164 0.836 38 H 0.182 0.818 39 H 0.154 0.846 40 H 0.187 0.813 41 H 0.196 0.804 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.657 13.354 -2.140 15.074 hybrid contribution -0.690 -1.144 -0.008 1.335 sum 5.967 12.210 -2.148 13.759 Atomic orbital electron populations 1.22829 0.81499 1.02640 1.00135 1.88145 1.19649 1.28354 1.95193 1.23102 0.95892 0.84222 0.98674 1.21008 0.90311 0.95864 0.91671 1.44133 1.73214 1.02375 1.09217 1.19064 1.38075 0.82219 0.98159 0.92168 1.25574 0.96830 1.00907 0.98633 1.70114 1.37287 1.37286 1.11420 0.85588 0.78197 0.81583 0.76499 1.20202 1.22420 1.20682 1.19964 0.83905 0.94778 0.93002 1.24817 1.00249 0.85563 0.95375 1.21541 0.92122 1.02529 1.08410 1.21904 1.00190 0.94864 1.03150 1.20603 0.81401 0.99448 1.05973 1.18079 0.96192 0.89020 1.03697 1.21355 0.92131 1.01725 0.94491 1.21572 1.00206 0.92222 0.99641 1.21631 0.95387 0.97305 0.94801 1.21444 0.95368 0.99647 1.00535 1.18257 0.85559 0.92929 0.96746 1.91461 1.51882 1.92589 1.76970 1.84053 1.21554 1.41473 1.61476 0.93576 0.93652 0.89955 0.93369 0.93890 0.90780 0.94384 0.94303 0.91342 0.88797 0.83623 0.81756 0.84605 0.81302 0.80423 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.39 -17.28 10.18 -148.98 -1.52 -18.80 16 3 C 0.06 2.42 6.28 71.98 0.45 2.87 16 4 C 0.14 6.72 5.73 86.38 0.49 7.21 16 5 N -0.57 -28.63 2.41 -706.34 -1.71 -30.33 16 6 C -0.25 -13.41 8.98 84.03 0.75 -12.65 16 7 H 0.06 3.26 7.93 -2.91 -0.02 3.24 16 8 C -0.02 -1.26 4.94 84.86 0.42 -0.84 16 9 N -0.92 -54.86 11.33 21.65 0.25 -54.61 16 10 Si 0.95 46.21 29.61 68.60 2.03 48.24 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 12 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 13 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 14 C 0.21 9.11 6.19 85.63 0.53 9.64 16 15 C -0.01 -0.28 6.90 24.88 0.17 -0.11 16 16 C -0.23 -9.73 10.78 22.13 0.24 -9.49 16 17 C -0.18 -7.11 10.75 22.40 0.24 -6.87 16 18 C -0.02 -1.01 6.37 24.27 0.15 -0.85 16 19 C -0.07 -2.27 5.80 -20.06 -0.12 -2.38 16 20 C -0.08 -2.02 9.70 22.53 0.22 -1.80 16 21 C -0.12 -2.02 10.03 22.24 0.22 -1.80 16 22 C -0.07 -1.08 10.04 22.32 0.22 -0.86 16 23 C -0.15 -3.05 10.01 22.28 0.22 -2.83 16 24 C 0.08 2.53 7.28 22.63 0.16 2.69 16 25 F -0.15 -5.20 16.81 44.97 0.76 -4.44 16 26 O -0.19 -8.72 10.65 -6.45 -0.07 -8.79 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.07 4.21 5.33 -2.39 -0.01 4.20 16 33 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16 34 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.07 2.67 8.08 -2.39 -0.02 2.65 16 36 H 0.09 3.75 8.03 -2.38 -0.02 3.73 16 37 H 0.15 5.98 8.06 -2.91 -0.02 5.95 16 38 H 0.16 5.28 8.06 -2.91 -0.02 5.25 16 39 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 40 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -72.78 367.92 6.40 -66.38 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 1.02 Total: 18.36 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 5.64 Total: -16.01 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.46 Total: -84.95 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -1.58 Total: -27.59 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.76 Total: -4.44 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -72.78 6.40 -66.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453603733.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.072 kcal (2) G-P(sol) polarization free energy of solvation -72.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds