Wall clock time and date at job start Tue Mar 31 2020 12:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81400 * 102.99787 * 2 1 4 4 C 1.50698 * 109.47028 * 180.02562 * 3 2 1 5 5 C 1.38355 * 119.85583 * 89.99877 * 4 3 2 6 6 C 1.37966 * 120.14585 * 180.25707 * 5 4 3 7 7 C 1.39575 * 119.84724 * 359.51375 * 6 5 4 8 8 C 1.47845 * 120.13943 * 180.25692 * 7 6 5 9 9 O 1.21556 * 120.00023 * 309.46541 * 8 7 6 10 10 N 1.34776 * 120.00197 * 129.46575 * 8 7 6 11 11 C 1.46925 * 120.63031 * 3.79161 * 10 8 7 12 12 C 1.53186 * 108.78054 * 233.58445 * 11 10 8 13 13 C 1.53047 * 109.31064 * 305.36776 * 12 11 10 14 14 C 1.53038 * 109.54099 * 61.36210 * 13 12 11 15 15 H 1.08994 * 109.49787 * 58.58263 * 14 13 12 16 16 C 1.50699 * 109.49564 * 178.65600 * 14 13 12 17 17 H 1.07996 * 120.00375 * 359.97438 * 16 14 13 18 18 C 1.37879 * 119.99525 * 179.97438 * 16 14 13 19 19 N 1.31510 * 120.00247 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99784 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47082 * 59.99777 * 20 18 16 22 22 H 1.48501 * 109.47039 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46964 * 300.00111 * 20 18 16 24 24 C 1.46922 * 120.63355 * 183.50931 * 10 8 7 25 25 C 1.39575 * 119.71618 * 0.46344 * 7 6 5 26 26 C 1.37958 * 119.85213 * 359.76807 * 25 7 6 27 27 H 1.09002 * 109.47304 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47351 * 300.00417 * 1 2 3 29 29 H 1.09005 * 109.47088 * 60.00021 * 1 2 3 30 30 H 1.09000 * 109.47217 * 59.99601 * 3 2 1 31 31 H 1.09002 * 109.46864 * 299.99692 * 3 2 1 32 32 H 1.07999 * 119.93024 * 359.97438 * 5 4 3 33 33 H 1.08004 * 120.07389 * 179.74583 * 6 5 4 34 34 H 1.09006 * 109.58425 * 353.37500 * 11 10 8 35 35 H 1.09003 * 109.59046 * 113.79664 * 11 10 8 36 36 H 1.09003 * 109.49533 * 65.31176 * 12 11 10 37 37 H 1.08996 * 109.50451 * 185.37676 * 12 11 10 38 38 H 1.09003 * 109.45752 * 181.38435 * 13 12 11 39 39 H 1.08997 * 109.45738 * 301.33882 * 13 12 11 40 40 H 0.97003 * 120.00314 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.59067 * 246.20355 * 24 10 8 42 42 H 1.08998 * 109.58713 * 6.62684 * 24 10 8 43 43 H 1.08001 * 120.07189 * 179.79106 * 25 7 6 44 44 H 1.07993 * 119.93058 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9374 -0.0006 5 6 4.4032 2.0151 -1.2008 6 6 5.7747 2.1653 -1.2084 7 6 6.4710 2.2491 -0.0017 8 6 7.9400 2.4158 -0.0023 9 8 8.6356 1.6742 -0.6685 10 7 8.5080 3.3899 0.7358 11 6 7.6891 4.2407 1.6100 12 6 7.9668 5.7085 1.2706 13 6 9.4711 5.9739 1.3651 14 6 10.2104 5.0958 0.3530 15 1 9.8456 5.3120 -0.6511 16 6 11.6883 5.3818 0.4238 17 1 12.0633 6.1167 1.1207 18 6 12.5617 4.7052 -0.4011 19 7 12.1051 3.8099 -1.2493 20 14 14.3935 5.0602 -0.3138 21 1 14.8903 4.7650 1.0541 22 1 15.1103 4.2078 -1.2961 23 1 14.6361 6.4906 -0.6305 24 6 9.9587 3.6174 0.6863 25 6 5.7750 2.1704 1.2056 26 6 4.4042 2.0154 1.1992 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8030 2.2371 0.8899 31 1 1.8031 2.2371 -0.8900 32 1 3.8629 1.9535 -2.1339 33 1 6.3078 2.2218 -2.1460 34 1 6.6335 4.0217 1.4485 35 1 7.9484 4.0512 2.6517 36 1 7.6232 5.9189 0.2578 37 1 7.4385 6.3511 1.9749 38 1 9.6689 7.0236 1.1481 39 1 9.8186 5.7396 2.3713 40 1 12.7195 3.3336 -1.8294 41 1 10.3994 3.3780 1.6541 42 1 10.4012 2.9870 -0.0849 43 1 6.3084 2.2311 2.1427 44 1 3.8643 1.9548 2.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597917646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:35 Heat of formation + Delta-G solvation = -17.798324 kcal Electronic energy + Delta-G solvation = -24257.613836 eV Core-core repulsion = 20879.530621 eV Total energy + Delta-G solvation = -3378.083215 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15757 -38.48868 -36.62513 -33.64859 -32.81022 -31.73525 -31.05502 -29.77480 -29.36786 -27.64205 -25.08083 -24.62633 -22.81618 -22.01680 -21.75223 -19.93741 -18.58906 -17.11148 -16.73245 -16.11232 -15.91451 -15.58992 -15.24074 -14.61397 -14.40498 -14.31813 -14.25625 -13.95875 -13.73875 -13.56216 -13.45838 -13.10477 -12.86341 -12.63602 -12.56012 -12.37488 -11.99457 -11.84906 -11.62894 -11.13980 -10.96716 -10.87625 -10.52164 -10.44931 -10.35136 -10.23377 -9.89884 -9.38370 -9.13736 -9.00906 -8.88918 -8.64061 -8.43100 -8.00237 -7.75129 -5.99554 -4.08429 0.66814 1.33120 1.63453 2.26180 3.21122 3.32332 3.38405 3.39539 3.62172 3.89350 4.36118 4.43194 4.49684 4.74489 4.77034 4.84720 4.89023 5.00020 5.12862 5.29020 5.30699 5.31199 5.39967 5.46882 5.55414 5.67833 5.76717 5.95030 5.98836 6.16746 6.22820 6.31170 6.37573 6.42242 6.59966 6.67583 6.80432 6.86381 6.96901 7.14899 7.26670 7.63253 7.86300 7.99236 8.23243 8.38309 8.82163 8.95844 9.57210 11.05925 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.031432 B = 0.002641 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.606399 B =10598.668753 C =11122.850030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.251 6.251 3 C -0.043 4.043 4 C -0.071 4.071 5 C -0.103 4.103 6 C -0.073 4.073 7 C -0.102 4.102 8 C 0.545 3.455 9 O -0.530 6.530 10 N -0.597 5.597 11 C 0.099 3.901 12 C -0.133 4.133 13 C -0.111 4.111 14 C 0.041 3.959 15 H 0.029 0.971 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.881 5.881 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.112 3.888 25 C -0.093 4.093 26 C -0.106 4.106 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.044 0.956 42 H 0.123 0.877 43 H 0.132 0.868 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.092 -2.566 4.791 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.023 6.023 3 C -0.190 4.190 4 C -0.072 4.072 5 C -0.123 4.123 6 C -0.091 4.091 7 C -0.106 4.106 8 C 0.331 3.669 9 O -0.408 6.408 10 N -0.329 5.329 11 C -0.025 4.025 12 C -0.172 4.172 13 C -0.149 4.149 14 C 0.022 3.978 15 H 0.047 0.953 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.518 5.518 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.008 4.008 25 C -0.111 4.111 26 C -0.126 4.126 27 H 0.119 0.881 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.140 0.860 43 H 0.149 0.851 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.015 -3.985 4.294 22.781 hybrid contribution 0.106 1.242 0.084 1.250 sum -21.909 -2.743 4.379 22.510 Atomic orbital electron populations 1.23416 0.94845 1.06517 1.04824 1.87382 1.06408 1.10476 1.98016 1.22313 0.96044 0.94946 1.05733 1.19241 0.92807 1.01233 0.93947 1.20936 0.93943 0.99986 0.97435 1.21188 0.93627 0.96651 0.97671 1.20245 0.94305 1.01705 0.94316 1.18320 0.86771 0.81467 0.80305 1.90812 1.63418 1.44089 1.42446 1.48457 1.10457 1.31698 1.42263 1.21940 0.95389 0.91252 0.93886 1.21943 0.98969 0.94987 1.01250 1.21635 0.92452 1.00296 1.00486 1.19036 0.94915 0.89642 0.94211 0.95298 1.21038 0.91060 1.22717 1.21229 0.92393 1.25058 0.98929 0.94999 0.95049 1.69872 1.34940 1.24651 1.22360 0.86645 0.85249 0.78196 0.77843 1.20234 1.21250 1.20293 1.22426 0.74491 1.01781 1.02097 1.21300 0.94008 0.98401 0.97432 1.20892 0.93948 1.00328 0.97391 0.88083 0.90536 0.90525 0.89090 0.89092 0.85414 0.84915 0.90187 0.91966 0.92176 0.92248 0.93012 0.93173 0.92550 0.93800 0.85954 0.85062 0.85468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.73 10.76 101.05 1.09 0.36 16 2 S -0.25 -2.34 22.36 -107.50 -2.40 -4.74 16 3 C -0.04 -0.35 6.06 36.00 0.22 -0.13 16 4 C -0.07 -0.75 5.15 -104.53 -0.54 -1.29 16 5 C -0.10 -1.20 9.68 -39.64 -0.38 -1.59 16 6 C -0.07 -1.06 9.74 -39.18 -0.38 -1.44 16 7 C -0.10 -1.64 5.00 -104.97 -0.53 -2.16 16 8 C 0.54 11.31 7.24 -12.33 -0.09 11.22 16 9 O -0.53 -13.39 16.47 5.32 0.09 -13.30 16 10 N -0.60 -12.10 2.97 -173.61 -0.51 -12.61 16 11 C 0.10 1.55 5.37 -3.71 -0.02 1.53 16 12 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 13 C -0.11 -2.20 5.10 -26.69 -0.14 -2.33 16 14 C 0.04 1.01 2.26 -91.43 -0.21 0.81 16 15 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.52 -14.12 8.56 -34.44 -0.29 -14.41 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 19 N -0.88 -25.78 11.41 55.43 0.63 -25.15 16 20 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.11 2.72 5.42 -3.49 -0.02 2.71 16 25 C -0.09 -1.20 7.37 -39.19 -0.29 -1.49 16 26 C -0.11 -1.14 9.68 -39.64 -0.38 -1.52 16 27 H 0.10 0.51 8.14 -51.92 -0.42 0.08 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 30 H 0.09 0.60 8.08 -51.92 -0.42 0.18 16 31 H 0.09 0.62 8.08 -51.92 -0.42 0.20 16 32 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 34 H 0.08 1.07 4.56 -51.93 -0.24 0.84 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.12 3.49 5.17 -51.93 -0.27 3.22 16 43 H 0.13 1.55 7.07 -52.49 -0.37 1.17 16 44 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -32.05 367.44 -10.65 -42.71 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.75 Total: 1.70 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -2.22 Total: -10.41 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.12 Total: -37.77 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -2.34 SS G_CDS: -2.40 Total: -4.74 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.05 -10.65 -42.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597917646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.909 kcal (2) G-P(sol) polarization free energy of solvation -32.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds