Wall clock time and date at job start Tue Mar 31 2020 12:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81398 * 103.00048 * 2 1 4 4 H 1.09005 * 109.46959 * 304.99832 * 3 2 1 5 5 C 1.52994 * 109.47359 * 65.00036 * 3 2 1 6 6 C 1.52994 * 109.47307 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47531 * 299.99823 * 6 5 3 8 8 C 1.53005 * 109.46544 * 60.00093 * 7 6 5 9 9 H 1.09000 * 109.46783 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47435 * 60.00343 * 8 7 6 11 11 C 1.34775 * 120.00063 * 84.99657 * 10 8 7 12 12 O 1.21606 * 120.00020 * 0.02562 * 11 10 8 13 13 C 1.47437 * 119.99812 * 179.97438 * 11 10 8 14 14 C 1.39227 * 120.28021 * 5.54585 * 13 11 10 15 15 C 1.38224 * 120.08604 * 179.97438 * 14 13 11 16 16 C 1.38820 * 120.67809 * 0.02562 * 15 14 13 17 17 C 1.37598 * 120.57177 * 359.97438 * 16 15 14 18 18 C 1.40697 * 119.88103 * 0.02562 * 17 16 15 19 19 C 1.40890 * 120.33034 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00528 * 213.39370 * 19 18 17 21 21 C 1.40278 * 120.00050 * 33.38384 * 19 18 17 22 22 N 1.30627 * 119.99527 * 8.71687 * 21 19 18 23 23 Si 1.86794 * 120.00189 * 188.71185 * 21 19 18 24 24 H 1.48499 * 109.47252 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47100 * 120.00152 * 23 21 19 26 26 H 1.48500 * 109.47217 * 240.00159 * 23 21 19 27 27 C 1.52998 * 109.47011 * 299.99822 * 8 7 6 28 28 H 1.09003 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47172 * 300.00273 * 1 2 3 30 30 H 1.09002 * 109.47284 * 60.00082 * 1 2 3 31 31 H 1.09005 * 109.47251 * 59.99975 * 5 3 2 32 32 H 1.09000 * 109.46921 * 299.99936 * 5 3 2 33 33 H 1.09004 * 109.47314 * 180.02562 * 6 5 3 34 34 H 1.09004 * 109.47163 * 60.00336 * 6 5 3 35 35 H 1.08994 * 109.47287 * 300.00316 * 7 6 5 36 36 H 1.09000 * 109.47739 * 179.97438 * 7 6 5 37 37 H 0.97000 * 119.99596 * 264.99596 * 10 8 7 38 38 H 1.08001 * 119.95373 * 0.25451 * 14 13 11 39 39 H 1.07999 * 119.65857 * 179.97438 * 15 14 13 40 40 H 1.07998 * 119.71566 * 179.97438 * 16 15 14 41 41 H 1.08001 * 120.05600 * 180.02562 * 17 16 15 42 42 H 0.97008 * 119.99907 * 179.97438 * 22 21 19 43 43 H 1.09004 * 109.47195 * 180.02562 * 27 8 7 44 44 H 1.09004 * 109.47493 * 300.00068 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8419 5 6 1.7428 2.4016 1.3073 6 6 2.0875 3.8922 1.3075 7 6 3.6025 4.0654 1.1822 8 6 4.0817 3.4313 -0.1253 9 1 5.1611 3.5543 -0.2144 10 7 3.4201 4.0857 -1.2567 11 6 3.9312 5.2218 -1.7710 12 8 4.9418 5.7034 -1.2961 13 6 3.2657 5.8801 -2.9101 14 6 2.0484 5.3996 -3.3851 15 6 1.4277 6.0201 -4.4530 16 6 2.0057 7.1245 -5.0640 17 6 3.2080 7.6223 -4.6169 18 6 3.8605 7.0091 -3.5317 19 6 5.0917 7.5113 -3.0658 20 1 5.8339 6.8361 -2.6662 21 6 5.3537 8.8883 -3.1211 22 7 4.4007 9.7219 -3.4426 23 14 7.0649 9.5298 -2.7348 24 1 7.9573 8.3904 -2.4022 25 1 7.6022 10.2499 -3.9173 26 1 6.9959 10.4591 -1.5786 27 6 3.7370 1.9406 -0.1255 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 2.2354 1.9150 2.1492 32 1 0.6635 2.2779 1.3968 33 1 1.7465 4.3439 2.2391 34 1 1.5952 4.3791 0.4657 35 1 4.0948 3.5785 2.0239 36 1 3.8481 5.1273 1.1819 37 1 2.6142 3.7013 -1.6357 38 1 1.5863 4.5437 -2.9158 39 1 0.4837 5.6414 -4.8161 40 1 1.5073 7.5971 -5.8975 41 1 3.6500 8.4822 -5.0982 42 1 4.5817 10.6742 -3.4805 43 1 4.0788 1.4888 -1.0567 44 1 4.2294 1.4537 0.7164 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601190869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:48 Heat of formation + Delta-G solvation = -50.172070 kcal Electronic energy + Delta-G solvation = -24884.198818 eV Core-core repulsion = 21504.711772 eV Total energy + Delta-G solvation = -3379.487046 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.15648 -39.48824 -38.16162 -35.66451 -34.52325 -32.06917 -31.87838 -31.58071 -30.37200 -29.43010 -27.28590 -24.46154 -23.72721 -23.41256 -22.69184 -21.41512 -20.12742 -19.32939 -18.28521 -17.35977 -17.09280 -16.70328 -16.32276 -16.00993 -15.81164 -15.67003 -15.17640 -14.84640 -14.82168 -14.50061 -14.27513 -14.23025 -14.03992 -13.82351 -13.42370 -13.20679 -13.12903 -12.86917 -12.85118 -12.79399 -12.52709 -12.44961 -12.30546 -11.88939 -11.76689 -11.52420 -11.48613 -11.18314 -11.14432 -10.68937 -10.22899 -9.86818 -9.38417 -9.22395 -8.66983 -8.65042 -6.35665 0.53396 0.74006 1.00884 1.33219 1.47459 1.49248 1.66787 2.21113 2.38824 2.48988 2.79884 3.59288 3.64449 3.74585 3.88305 4.10069 4.15315 4.26834 4.34850 4.37033 4.38122 4.39211 4.41182 4.57321 4.62043 4.65076 4.78971 4.88830 4.91233 5.00427 5.04162 5.09189 5.12216 5.23626 5.26234 5.30380 5.35384 5.38818 5.62610 5.76712 5.83312 6.07079 6.11660 6.34963 6.66082 6.81399 6.93807 7.02546 7.71410 8.30066 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.003690 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.076762 B = 7586.697997 C = 8629.341674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.297 6.297 3 C -0.043 4.043 4 H 0.083 0.917 5 C -0.102 4.102 6 C -0.110 4.110 7 C -0.128 4.128 8 C 0.154 3.846 9 H 0.066 0.934 10 N -0.720 5.720 11 C 0.562 3.438 12 O -0.577 6.577 13 C -0.280 4.280 14 C -0.054 4.054 15 C -0.237 4.237 16 C -0.093 4.093 17 C -0.178 4.178 18 C 0.114 3.886 19 C -0.456 4.456 20 H 0.083 0.917 21 C 0.031 3.969 22 N -0.823 5.823 23 Si 0.978 3.022 24 H -0.269 1.269 25 H -0.255 1.255 26 H -0.267 1.267 27 C -0.094 4.094 28 H 0.111 0.889 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.400 0.600 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.288 0.712 43 H 0.073 0.927 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.219 -14.719 7.423 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.068 6.068 3 C -0.172 4.172 4 H 0.101 0.899 5 C -0.141 4.141 6 C -0.149 4.149 7 C -0.167 4.167 8 C 0.048 3.952 9 H 0.084 0.916 10 N -0.375 5.375 11 C 0.355 3.645 12 O -0.458 6.458 13 C -0.285 4.285 14 C -0.073 4.073 15 C -0.256 4.256 16 C -0.112 4.112 17 C -0.197 4.197 18 C 0.111 3.889 19 C -0.485 4.485 20 H 0.100 0.900 21 C -0.183 4.183 22 N -0.450 5.450 23 Si 0.800 3.200 24 H -0.194 1.194 25 H -0.179 1.179 26 H -0.192 1.192 27 C -0.133 4.133 28 H 0.129 0.871 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.238 0.762 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.137 0.863 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.896 -15.083 7.724 18.295 hybrid contribution -0.345 1.690 -0.214 1.738 sum -7.240 -13.393 7.509 16.976 Atomic orbital electron populations 1.23460 0.91641 1.07343 1.05810 1.86950 1.10305 1.11556 1.98025 1.23104 0.99330 0.93008 1.01709 0.89877 1.21808 1.01668 0.94610 0.96000 1.21461 0.94950 0.96373 1.02150 1.21892 0.97348 1.00087 0.97329 1.20837 0.97054 0.91489 0.85848 0.91593 1.45891 1.30777 1.25820 1.34964 1.18390 0.83344 0.80213 0.82556 1.90648 1.26961 1.65004 1.63199 1.19871 0.99902 1.06008 1.02708 1.21009 0.92974 0.97774 0.95519 1.20777 1.02689 1.00446 1.01684 1.21169 0.94880 0.96156 0.98956 1.21328 0.97932 1.02095 0.98387 1.17857 0.92006 0.89771 0.89291 1.20191 1.01351 0.93078 1.33853 0.89952 1.26793 1.02233 0.96913 0.92393 1.69751 1.34587 1.04801 1.35843 0.85214 0.77465 0.78310 0.79038 1.19364 1.17927 1.19179 1.21539 0.93639 0.93864 1.04269 0.87092 0.89363 0.89972 0.89868 0.90506 0.90660 0.93046 0.89303 0.94472 0.76240 0.85467 0.85092 0.86349 0.88130 0.90087 0.90817 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.45 113.37 1.18 -0.20 16 2 S -0.30 -5.39 21.79 -56.49 -1.23 -6.62 16 3 C -0.04 -0.79 2.48 30.59 0.08 -0.71 16 4 H 0.08 1.59 6.51 -2.39 -0.02 1.57 16 5 C -0.10 -1.68 5.11 30.59 0.16 -1.52 16 6 C -0.11 -2.34 5.76 30.59 0.18 -2.17 16 7 C -0.13 -3.35 5.60 30.60 0.17 -3.18 16 8 C 0.15 4.37 2.78 44.99 0.13 4.50 16 9 H 0.07 2.22 7.58 -2.39 -0.02 2.20 16 10 N -0.72 -24.04 4.18 -445.79 -1.86 -25.90 16 11 C 0.56 25.88 7.68 86.67 0.67 26.55 16 12 O -0.58 -31.16 13.23 -4.05 -0.05 -31.22 16 13 C -0.28 -13.64 5.92 -19.70 -0.12 -13.75 16 14 C -0.05 -2.16 9.52 22.50 0.21 -1.95 16 15 C -0.24 -9.24 10.03 22.41 0.22 -9.01 16 16 C -0.09 -4.05 10.01 22.26 0.22 -3.83 16 17 C -0.18 -9.25 8.62 22.72 0.20 -9.06 16 18 C 0.11 6.34 5.52 -21.11 -0.12 6.23 16 19 C -0.46 -26.45 7.71 23.42 0.18 -26.27 16 20 H 0.08 5.04 5.86 -2.91 -0.02 5.02 16 21 C 0.03 1.68 5.27 85.37 0.45 2.13 16 22 N -0.82 -44.36 11.06 21.88 0.24 -44.12 16 23 Si 0.98 42.12 29.57 68.60 2.03 44.15 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 27 C -0.09 -2.00 4.89 30.59 0.15 -1.85 16 28 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 0.89 7.14 -2.39 -0.02 0.87 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.08 1.07 6.92 -2.39 -0.02 1.05 16 33 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.05 1.26 7.60 -2.39 -0.02 1.24 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.40 11.31 4.93 -92.71 -0.46 10.85 16 38 H 0.13 3.93 6.44 -2.91 -0.02 3.91 16 39 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 40 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.10 5.48 6.51 -2.91 -0.02 5.46 16 42 H 0.29 14.00 8.29 -92.70 -0.77 13.23 16 43 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -67.33 357.57 3.63 -63.69 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.55 Total: 34.11 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 3.96 Total: -34.10 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: -1.62 Total: -70.02 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.05 Total: -31.22 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 16 Polarization: -5.39 SS G_CDS: -1.23 Total: -6.62 kcal Total: -67.33 3.63 -63.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601190869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.520 kcal (2) G-P(sol) polarization free energy of solvation -67.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds