Wall clock time and date at job start Tue Mar 31 2020 12:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81398 * 109.46888 * 2 1 4 4 C 1.81406 * 102.99928 * 179.97438 * 3 2 1 5 5 H 1.08994 * 110.01501 * 306.39294 * 4 3 2 6 6 C 1.54267 * 110.07055 * 67.80782 * 4 3 2 7 7 C 1.54886 * 104.19632 * 142.91701 * 6 4 3 8 8 C 1.54890 * 102.74841 * 322.05552 * 7 6 4 9 9 C 1.53870 * 110.02995 * 184.99780 * 4 3 2 10 10 H 1.08996 * 110.03129 * 121.34013 * 9 4 3 11 11 N 1.46498 * 110.03725 * 359.95116 * 9 4 3 12 12 C 1.34771 * 119.99960 * 154.99905 * 11 9 4 13 13 O 1.21612 * 120.00005 * 0.02562 * 12 11 9 14 14 C 1.47428 * 120.00061 * 179.72842 * 12 11 9 15 15 C 1.39230 * 120.28127 * 355.61038 * 14 12 11 16 16 C 1.38220 * 120.09301 * 179.97438 * 15 14 12 17 17 C 1.38828 * 120.67745 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.56835 * 0.02562 * 17 16 15 19 19 C 1.40706 * 119.88396 * 359.70094 * 18 17 16 20 20 C 1.40888 * 120.33242 * 180.29747 * 19 18 17 21 21 H 1.07996 * 120.00465 * 215.81948 * 20 19 18 22 22 C 1.40277 * 119.99724 * 35.82270 * 20 19 18 23 23 N 1.30628 * 120.00175 * 8.97631 * 22 20 19 24 24 Si 1.86798 * 119.99786 * 188.97446 * 22 20 19 25 25 H 1.48494 * 109.47354 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46858 * 120.00142 * 24 22 20 27 27 H 1.48505 * 109.47176 * 239.99982 * 24 22 20 28 28 H 1.09003 * 109.46856 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47103 * 300.00023 * 1 2 3 30 30 H 1.09003 * 109.46657 * 60.00259 * 1 2 3 31 31 H 1.09001 * 109.47128 * 239.99631 * 2 1 3 32 32 H 1.09003 * 109.46657 * 119.99741 * 2 1 3 33 33 H 1.09000 * 110.49147 * 261.59360 * 6 4 3 34 34 H 1.09003 * 110.49045 * 24.23843 * 6 4 3 35 35 H 1.08999 * 110.76013 * 80.37015 * 7 6 4 36 36 H 1.09004 * 110.75996 * 203.56225 * 7 6 4 37 37 H 1.08997 * 110.48773 * 279.26173 * 8 7 6 38 38 H 1.09003 * 110.48698 * 156.61641 * 8 7 6 39 39 H 0.96994 * 119.99867 * 335.00399 * 11 9 4 40 40 H 1.07995 * 119.95345 * 359.95171 * 15 14 12 41 41 H 1.07996 * 119.66043 * 179.97438 * 16 15 14 42 42 H 1.07996 * 119.71808 * 179.97438 * 17 16 15 43 43 H 1.08003 * 120.06022 * 179.97438 * 18 17 16 44 44 H 0.96991 * 120.00195 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 0.0008 5 1 4.2390 0.8602 0.8254 6 6 4.4021 0.9022 -1.3406 7 6 5.7464 1.6141 -1.6318 8 6 5.4809 3.0594 -1.1424 9 6 4.6230 2.8775 0.1268 10 1 5.2572 2.8977 1.0130 11 7 3.6148 3.9373 0.2072 12 6 3.9131 5.1070 0.8067 13 8 5.0192 5.2827 1.2804 14 6 2.9004 6.1758 0.8823 15 6 1.6660 6.0188 0.2577 16 6 0.7193 7.0232 0.3316 17 6 0.9839 8.1964 1.0250 18 6 2.1950 8.3810 1.6515 19 6 3.1738 7.3717 1.5965 20 6 4.4147 7.5482 2.2398 21 1 5.3154 7.1533 1.7936 22 6 4.4803 8.2367 3.4602 23 7 3.3812 8.5606 4.0874 24 14 6.1396 8.6905 4.1885 25 1 7.2216 8.2141 3.2900 26 1 6.2301 10.1657 4.3327 27 1 6.2861 8.0530 5.5217 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 4.5530 -0.1729 -1.2433 34 1 3.6784 1.1171 -2.1269 35 1 6.5567 1.1567 -1.0640 36 1 5.9682 1.5993 -2.6989 37 1 4.9316 3.6227 -1.8967 38 1 6.4192 3.5586 -0.9003 39 1 2.7327 3.7972 -0.1709 40 1 1.4481 5.1113 -0.2855 41 1 -0.2358 6.8943 -0.1559 42 1 0.2331 8.9712 1.0724 43 1 2.3923 9.2972 2.1884 44 1 3.4265 9.0370 4.9310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601276560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:50 Heat of formation + Delta-G solvation = -29.422603 kcal Electronic energy + Delta-G solvation = -24639.723636 eV Core-core repulsion = 21261.136354 eV Total energy + Delta-G solvation = -3378.587282 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.35197 -37.77274 -36.36888 -33.79214 -33.16405 -32.64140 -29.97278 -29.53946 -28.95909 -27.24668 -25.25363 -23.69511 -22.28655 -20.96493 -20.90230 -20.08753 -19.50832 -17.49513 -16.58401 -16.52521 -15.53288 -15.30574 -15.15087 -14.90582 -14.50941 -14.14885 -14.04469 -13.89967 -13.38203 -13.08873 -12.86193 -12.67256 -12.57095 -12.17502 -11.85934 -11.77137 -11.64114 -11.45326 -11.26314 -11.13461 -11.09965 -10.94541 -10.82092 -10.64729 -10.57627 -10.44862 -10.02884 -9.76149 -9.59686 -9.22430 -8.34581 -8.29959 -7.65967 -7.51884 -7.26982 -6.74148 -4.33353 1.51369 2.41425 2.51076 2.85837 3.13928 3.23865 3.26389 4.02719 4.07867 4.18376 4.39221 4.50134 4.75832 4.76516 4.82816 4.95414 5.21582 5.25078 5.35931 5.42531 5.51950 5.55624 5.59732 5.63842 5.68721 5.73651 5.90564 5.92759 6.02688 6.09146 6.18105 6.27347 6.35124 6.41055 6.69277 7.01563 7.14850 7.23028 7.30984 7.52725 7.69336 7.94731 8.05653 8.24575 8.45800 8.74314 8.89480 8.97106 9.48076 10.22188 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.004168 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.203919 B = 6716.128022 C = 7859.034413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 S -0.235 6.235 4 C -0.071 4.071 5 H 0.093 0.907 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.133 4.133 9 C 0.167 3.833 10 H 0.096 0.904 11 N -0.735 5.735 12 C 0.567 3.433 13 O -0.539 6.539 14 C -0.259 4.259 15 C -0.055 4.055 16 C -0.244 4.244 17 C -0.095 4.095 18 C -0.148 4.148 19 C 0.148 3.852 20 C -0.423 4.423 21 H 0.111 0.889 22 C 0.069 3.931 23 N -0.795 5.795 24 Si 0.915 3.085 25 H -0.257 1.257 26 H -0.274 1.274 27 H -0.275 1.275 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.396 0.604 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.115 0.885 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 -14.653 -8.218 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.248 4.248 3 S -0.008 6.008 4 C -0.201 4.201 5 H 0.111 0.889 6 C -0.158 4.158 7 C -0.159 4.159 8 C -0.172 4.172 9 C 0.060 3.940 10 H 0.114 0.886 11 N -0.394 5.394 12 C 0.362 3.638 13 O -0.418 6.418 14 C -0.264 4.264 15 C -0.074 4.074 16 C -0.263 4.263 17 C -0.114 4.114 18 C -0.167 4.167 19 C 0.144 3.856 20 C -0.452 4.452 21 H 0.128 0.872 22 C -0.149 4.149 23 N -0.421 5.421 24 Si 0.739 3.261 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.200 1.200 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.236 0.764 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.133 0.867 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.982 -13.469 -7.616 15.505 hybrid contribution 0.725 -1.130 0.402 1.402 sum -0.258 -14.599 -7.214 16.286 Atomic orbital electron populations 1.21499 0.92359 1.02214 1.03407 1.23383 1.00190 0.96752 1.04457 1.86925 1.04638 1.11373 1.97831 1.24207 0.93603 1.00992 1.01314 0.88863 1.22779 0.98204 0.99281 0.95499 1.22448 0.96524 0.95772 1.01164 1.22827 1.00612 0.96422 0.97328 1.21151 0.89887 0.83572 0.99360 0.88648 1.46257 1.15605 1.14977 1.62520 1.18437 0.87859 0.81174 0.76353 1.90636 1.23619 1.80269 1.47296 1.19464 0.95106 0.96244 1.15570 1.20680 0.93137 0.96562 0.96976 1.20283 0.99271 0.96963 1.09788 1.20796 0.96527 0.96395 0.97707 1.21324 0.94095 0.99585 1.01699 1.17486 0.92560 0.88004 0.87523 1.20328 0.95990 1.26052 1.02794 0.87164 1.26132 0.98371 0.92948 0.97426 1.69727 1.29240 1.29088 1.14008 0.86139 0.82418 0.78338 0.79172 1.18028 1.19943 1.20014 0.91448 0.91526 0.91680 0.90447 0.90422 0.91502 0.90132 0.91301 0.91128 0.90807 0.90638 0.76380 0.89217 0.89108 0.89119 0.86709 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.92 37.16 0.37 -0.81 16 2 C -0.10 -0.94 6.55 37.16 0.24 -0.70 16 3 S -0.23 -3.08 18.14 -107.50 -1.95 -5.03 16 4 C -0.07 -0.88 3.41 -25.61 -0.09 -0.97 16 5 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 6 C -0.12 -1.16 6.26 -25.07 -0.16 -1.31 16 7 C -0.12 -1.21 6.91 -24.74 -0.17 -1.38 16 8 C -0.13 -1.82 6.53 -25.07 -0.16 -1.98 16 9 C 0.17 2.62 3.24 -66.81 -0.22 2.41 16 10 H 0.10 1.66 7.56 -51.93 -0.39 1.27 16 11 N -0.74 -13.90 4.55 -53.79 -0.24 -14.14 16 12 C 0.57 13.52 7.72 -12.52 -0.10 13.43 16 13 O -0.54 -14.26 13.18 5.27 0.07 -14.19 16 14 C -0.26 -6.54 5.92 -104.37 -0.62 -7.16 16 15 C -0.05 -1.23 9.52 -39.22 -0.37 -1.60 16 16 C -0.24 -5.37 10.03 -39.37 -0.39 -5.76 16 17 C -0.10 -2.20 10.01 -39.60 -0.40 -2.60 16 18 C -0.15 -3.83 8.62 -38.88 -0.34 -4.17 16 19 C 0.15 4.07 5.48 -106.54 -0.58 3.48 16 20 C -0.42 -11.84 7.78 -37.81 -0.29 -12.13 16 21 H 0.11 3.20 5.73 -52.49 -0.30 2.89 16 22 C 0.07 1.81 5.25 -17.30 -0.09 1.72 16 23 N -0.80 -21.01 11.25 55.56 0.63 -20.39 16 24 Si 0.91 19.97 29.57 -169.99 -5.03 14.95 16 25 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.81 7.81 -51.93 -0.41 0.40 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.40 7.06 4.07 -23.60 -0.10 6.96 16 40 H 0.09 1.76 6.42 -52.49 -0.34 1.43 16 41 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.11 3.03 6.72 -52.48 -0.35 2.67 16 44 H 0.28 6.72 8.29 -40.82 -0.34 6.39 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -29.93 363.36 -10.93 -40.85 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -6.51 Total: 12.01 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -3.37 Total: -19.55 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.38 Total: -34.53 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.07 Total: -14.19 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.95 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -1.95 Total: -5.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.93 -10.93 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601276560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.432 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds