Wall clock time and date at job start Tue Mar 31 2020 12:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81398 * 109.46888 * 2 1 4 4 C 1.81406 * 102.99928 * 179.97438 * 3 2 1 5 5 H 1.08994 * 110.01501 * 306.39294 * 4 3 2 6 6 C 1.54267 * 110.07055 * 67.80782 * 4 3 2 7 7 C 1.54886 * 104.19632 * 142.91701 * 6 4 3 8 8 C 1.54890 * 102.74841 * 322.05552 * 7 6 4 9 9 C 1.53870 * 110.02995 * 184.99780 * 4 3 2 10 10 H 1.08996 * 110.03129 * 121.34013 * 9 4 3 11 11 N 1.46498 * 110.03725 * 359.95116 * 9 4 3 12 12 C 1.34771 * 119.99960 * 154.99905 * 11 9 4 13 13 O 1.21612 * 120.00005 * 0.02562 * 12 11 9 14 14 C 1.47428 * 120.00061 * 179.72842 * 12 11 9 15 15 C 1.39230 * 120.28127 * 355.61038 * 14 12 11 16 16 C 1.38220 * 120.09301 * 179.97438 * 15 14 12 17 17 C 1.38828 * 120.67745 * 0.02562 * 16 15 14 18 18 C 1.37598 * 120.56835 * 0.02562 * 17 16 15 19 19 C 1.40706 * 119.88396 * 359.70094 * 18 17 16 20 20 C 1.40888 * 120.33242 * 180.29747 * 19 18 17 21 21 H 1.07996 * 120.00465 * 215.81948 * 20 19 18 22 22 C 1.40277 * 119.99724 * 35.82270 * 20 19 18 23 23 N 1.30628 * 120.00175 * 8.97631 * 22 20 19 24 24 Si 1.86798 * 119.99786 * 188.97446 * 22 20 19 25 25 H 1.48494 * 109.47354 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46858 * 120.00142 * 24 22 20 27 27 H 1.48505 * 109.47176 * 239.99982 * 24 22 20 28 28 H 1.09003 * 109.46856 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47103 * 300.00023 * 1 2 3 30 30 H 1.09003 * 109.46657 * 60.00259 * 1 2 3 31 31 H 1.09001 * 109.47128 * 239.99631 * 2 1 3 32 32 H 1.09003 * 109.46657 * 119.99741 * 2 1 3 33 33 H 1.09000 * 110.49147 * 261.59360 * 6 4 3 34 34 H 1.09003 * 110.49045 * 24.23843 * 6 4 3 35 35 H 1.08999 * 110.76013 * 80.37015 * 7 6 4 36 36 H 1.09004 * 110.75996 * 203.56225 * 7 6 4 37 37 H 1.08997 * 110.48773 * 279.26173 * 8 7 6 38 38 H 1.09003 * 110.48698 * 156.61641 * 8 7 6 39 39 H 0.96994 * 119.99867 * 335.00399 * 11 9 4 40 40 H 1.07995 * 119.95345 * 359.95171 * 15 14 12 41 41 H 1.07996 * 119.66043 * 179.97438 * 16 15 14 42 42 H 1.07996 * 119.71808 * 179.97438 * 17 16 15 43 43 H 1.08003 * 120.06022 * 179.97438 * 18 17 16 44 44 H 0.96991 * 120.00195 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 0.0008 5 1 4.2390 0.8602 0.8254 6 6 4.4021 0.9022 -1.3406 7 6 5.7464 1.6141 -1.6318 8 6 5.4809 3.0594 -1.1424 9 6 4.6230 2.8775 0.1268 10 1 5.2572 2.8977 1.0130 11 7 3.6148 3.9373 0.2072 12 6 3.9131 5.1070 0.8067 13 8 5.0192 5.2827 1.2804 14 6 2.9004 6.1758 0.8823 15 6 1.6660 6.0188 0.2577 16 6 0.7193 7.0232 0.3316 17 6 0.9839 8.1964 1.0250 18 6 2.1950 8.3810 1.6515 19 6 3.1738 7.3717 1.5965 20 6 4.4147 7.5482 2.2398 21 1 5.3154 7.1533 1.7936 22 6 4.4803 8.2367 3.4602 23 7 3.3812 8.5606 4.0874 24 14 6.1396 8.6905 4.1885 25 1 7.2216 8.2141 3.2900 26 1 6.2301 10.1657 4.3327 27 1 6.2861 8.0530 5.5217 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 4.5530 -0.1729 -1.2433 34 1 3.6784 1.1171 -2.1269 35 1 6.5567 1.1567 -1.0640 36 1 5.9682 1.5993 -2.6989 37 1 4.9316 3.6227 -1.8967 38 1 6.4192 3.5586 -0.9003 39 1 2.7327 3.7972 -0.1709 40 1 1.4481 5.1113 -0.2855 41 1 -0.2358 6.8943 -0.1559 42 1 0.2331 8.9712 1.0724 43 1 2.3923 9.2972 2.1884 44 1 3.4265 9.0370 4.9310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601276560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:49 Heat of formation + Delta-G solvation = -44.823269 kcal Electronic energy + Delta-G solvation = -24640.391459 eV Core-core repulsion = 21261.136354 eV Total energy + Delta-G solvation = -3379.255105 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.96634 -39.26972 -38.08484 -35.66768 -34.58779 -33.55041 -31.83769 -31.38125 -29.95184 -28.56943 -27.14758 -24.51670 -23.99326 -22.80035 -21.81960 -21.40358 -21.20788 -19.36962 -18.21890 -17.76987 -17.09564 -16.61952 -16.45887 -15.93554 -15.86791 -15.67667 -15.59404 -15.12054 -14.87743 -14.83399 -14.50423 -13.99767 -13.75533 -13.48483 -13.38076 -13.02605 -12.87018 -12.81115 -12.67120 -12.44264 -12.40986 -12.32650 -12.18141 -11.99672 -11.93355 -11.73883 -11.61011 -11.47832 -11.13984 -10.71350 -10.21289 -9.94596 -9.40292 -9.21592 -8.67896 -8.66928 -6.36856 0.50502 0.56753 1.00232 1.32905 1.46904 1.49442 1.60310 2.21740 2.34455 2.57549 2.79430 3.38354 3.51602 3.72610 4.01334 4.07716 4.12744 4.25500 4.29857 4.32304 4.38282 4.41939 4.48608 4.56496 4.60245 4.71033 4.86741 4.88979 4.93868 4.95145 5.04182 5.10242 5.11349 5.16352 5.25044 5.26636 5.33989 5.37847 5.61192 5.70751 5.82434 6.04994 6.11179 6.34662 6.65199 6.79949 6.91835 7.01467 7.66346 8.31399 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013734 B = 0.004168 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.203919 B = 6716.128022 C = 7859.034413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 S -0.299 6.299 4 C -0.058 4.058 5 H 0.102 0.898 6 C -0.107 4.107 7 C -0.108 4.108 8 C -0.132 4.132 9 C 0.156 3.844 10 H 0.069 0.931 11 N -0.718 5.718 12 C 0.560 3.440 13 O -0.577 6.577 14 C -0.280 4.280 15 C -0.054 4.054 16 C -0.234 4.234 17 C -0.091 4.091 18 C -0.174 4.174 19 C 0.118 3.882 20 C -0.463 4.463 21 H 0.087 0.913 22 C 0.032 3.968 23 N -0.824 5.824 24 Si 0.979 3.021 25 H -0.269 1.269 26 H -0.254 1.254 27 H -0.267 1.267 28 H 0.092 0.908 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.404 0.596 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.123 0.877 43 H 0.100 0.900 44 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 -17.146 -9.660 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.228 4.228 3 S -0.073 6.073 4 C -0.187 4.187 5 H 0.120 0.880 6 C -0.146 4.146 7 C -0.147 4.147 8 C -0.171 4.171 9 C 0.049 3.951 10 H 0.087 0.913 11 N -0.376 5.376 12 C 0.354 3.646 13 O -0.459 6.459 14 C -0.285 4.285 15 C -0.073 4.073 16 C -0.253 4.253 17 C -0.109 4.109 18 C -0.194 4.194 19 C 0.114 3.886 20 C -0.492 4.492 21 H 0.104 0.896 22 C -0.183 4.183 23 N -0.451 5.451 24 Si 0.801 3.199 25 H -0.194 1.194 26 H -0.178 1.178 27 H -0.192 1.192 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.245 0.755 40 H 0.137 0.863 41 H 0.150 0.850 42 H 0.141 0.859 43 H 0.118 0.882 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.227 -15.995 -9.087 18.531 hybrid contribution 0.930 -0.489 0.739 1.284 sum -1.297 -16.484 -8.348 18.523 Atomic orbital electron populations 1.21531 0.91753 1.03540 1.02624 1.23434 1.00417 0.93112 1.05825 1.87047 1.05947 1.16226 1.98035 1.24125 0.92525 0.98588 1.03506 0.87980 1.22754 0.97559 1.00701 0.93603 1.22428 0.97254 0.92616 1.02440 1.22762 0.99123 0.99161 0.96084 1.21397 0.89589 0.84722 0.99345 0.91298 1.46098 1.16660 1.14117 1.60697 1.18461 0.87169 0.82415 0.76572 1.90609 1.24917 1.81224 1.49110 1.19873 0.96727 0.96337 1.15567 1.20990 0.92031 0.97935 0.96345 1.20776 1.00497 0.95767 1.08251 1.21174 0.95916 0.97654 0.96171 1.21284 0.95505 0.99096 1.03483 1.17857 0.93122 0.89214 0.88364 1.20275 0.95708 1.28713 1.04540 0.89557 1.26820 1.01886 0.92474 0.97114 1.69747 1.30743 1.29941 1.14661 0.85202 0.77614 0.79031 0.78083 1.19368 1.17781 1.19150 0.88915 0.92904 0.91913 0.88334 0.89682 0.88504 0.89903 0.90111 0.89116 0.91709 0.92448 0.75471 0.86314 0.85024 0.85942 0.88206 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.92 71.98 0.71 -1.26 16 2 C -0.08 -1.26 6.55 71.98 0.47 -0.79 16 3 S -0.30 -7.35 18.14 -56.49 -1.02 -8.38 16 4 C -0.06 -1.34 3.41 31.32 0.11 -1.23 16 5 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 6 C -0.11 -1.73 6.26 31.67 0.20 -1.53 16 7 C -0.11 -1.91 6.91 31.88 0.22 -1.69 16 8 C -0.13 -3.63 6.53 31.67 0.21 -3.42 16 9 C 0.16 4.95 3.24 45.72 0.15 5.10 16 10 H 0.07 2.54 7.56 -2.39 -0.02 2.53 16 11 N -0.72 -27.79 4.55 -442.36 -2.01 -29.80 16 12 C 0.56 28.01 7.72 86.66 0.67 28.68 16 13 O -0.58 -32.66 13.18 -4.07 -0.05 -32.71 16 14 C -0.28 -14.62 5.92 -19.70 -0.12 -14.74 16 15 C -0.05 -2.39 9.52 22.50 0.21 -2.18 16 16 C -0.23 -9.76 10.03 22.41 0.22 -9.54 16 17 C -0.09 -4.09 10.01 22.26 0.22 -3.87 16 18 C -0.17 -9.31 8.62 22.72 0.20 -9.12 16 19 C 0.12 6.79 5.48 -21.11 -0.12 6.68 16 20 C -0.46 -27.63 7.78 23.42 0.18 -27.45 16 21 H 0.09 5.43 5.73 -2.91 -0.02 5.41 16 22 C 0.03 1.73 5.25 85.37 0.45 2.18 16 23 N -0.82 -45.28 11.25 21.88 0.25 -45.04 16 24 Si 0.98 42.81 29.57 68.60 2.03 44.84 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.36 7.81 -2.39 -0.02 1.34 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.88 8.05 -2.39 -0.02 1.86 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.40 14.34 4.07 -103.66 -0.42 13.91 16 40 H 0.12 4.46 6.42 -2.91 -0.02 4.44 16 41 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 42 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 43 H 0.10 5.52 6.72 -2.91 -0.02 5.50 16 44 H 0.29 14.26 8.29 -92.71 -0.77 13.49 16 Total: -1.00 -70.24 363.36 3.75 -66.48 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: 0.58 Total: 38.77 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 3.99 Total: -34.17 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.76 Total: -74.84 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.05 Total: -32.71 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -1.02 Total: -8.38 kcal Total: -70.24 3.75 -66.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601276560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.661 kcal (2) G-P(sol) polarization free energy of solvation -70.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds