Wall clock time and date at job start Tue Mar 31 2020 12:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81400 * 109.47178 * 2 1 4 4 C 1.81399 * 103.00197 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.53649 * 307.61337 * 4 3 2 6 6 C 1.54888 * 110.48649 * 70.22130 * 4 3 2 7 7 C 1.54888 * 102.74904 * 156.62032 * 6 4 3 8 8 C 1.54267 * 104.19503 * 322.06360 * 7 6 4 9 9 C 1.53868 * 106.60217 * 23.60850 * 8 7 6 10 10 H 1.09000 * 110.02878 * 240.66980 * 9 8 7 11 11 N 1.46493 * 110.03451 * 119.28659 * 9 8 7 12 12 C 1.34778 * 120.00123 * 86.45406 * 11 9 8 13 13 O 1.21597 * 120.00063 * 359.97438 * 12 11 9 14 14 C 1.47431 * 119.99689 * 180.02562 * 12 11 9 15 15 C 1.39226 * 120.28632 * 356.03500 * 14 12 11 16 16 C 1.38217 * 120.09455 * 179.97438 * 15 14 12 17 17 C 1.38832 * 120.67639 * 0.02562 * 16 15 14 18 18 C 1.37597 * 120.56952 * 359.74418 * 17 16 15 19 19 C 1.40710 * 119.87948 * 0.48809 * 18 17 16 20 20 C 1.40888 * 120.32482 * 179.79101 * 19 18 17 21 21 H 1.08002 * 119.99697 * 145.31490 * 20 19 18 22 22 C 1.40271 * 120.00269 * 325.30778 * 20 19 18 23 23 N 1.30630 * 119.99864 * 335.64226 * 22 20 19 24 24 Si 1.86806 * 120.00044 * 155.64368 * 22 20 19 25 25 H 1.48499 * 109.47065 * 60.00102 * 24 22 20 26 26 H 1.48501 * 109.46958 * 300.00011 * 24 22 20 27 27 H 1.48499 * 109.46641 * 180.02562 * 24 22 20 28 28 H 1.08997 * 109.47086 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47291 * 300.00283 * 1 2 3 30 30 H 1.09005 * 109.46686 * 59.99828 * 1 2 3 31 31 H 1.08994 * 109.47291 * 239.99717 * 2 1 3 32 32 H 1.09002 * 109.46889 * 119.99679 * 2 1 3 33 33 H 1.09004 * 110.75530 * 38.31386 * 6 4 3 34 34 H 1.08993 * 110.92001 * 275.01255 * 6 4 3 35 35 H 1.08996 * 110.48668 * 203.38149 * 7 6 4 36 36 H 1.09004 * 110.59833 * 80.79514 * 7 6 4 37 37 H 1.09002 * 110.03058 * 264.31691 * 8 7 6 38 38 H 1.09002 * 110.03318 * 142.89314 * 8 7 6 39 39 H 0.97005 * 119.99706 * 266.45577 * 11 9 8 40 40 H 1.08002 * 119.95284 * 359.97236 * 15 14 12 41 41 H 1.08002 * 119.66415 * 179.97438 * 16 15 14 42 42 H 1.08000 * 119.71484 * 179.97438 * 17 16 15 43 43 H 1.07998 * 120.06201 * 180.26235 * 18 17 16 44 44 H 0.96993 * 119.99922 * 354.28243 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5058 0.0008 5 1 4.2465 0.8439 0.8096 6 6 4.4210 0.9567 -1.3643 7 6 5.9004 1.4129 -1.4112 8 6 5.8840 2.8163 -0.7709 9 6 4.6358 2.8754 0.1269 10 1 3.9691 3.6681 -0.2125 11 7 5.0289 3.1121 1.5181 12 6 5.2075 4.3718 1.9629 13 8 5.0428 5.3118 1.2094 14 6 5.6037 4.6098 3.3629 15 6 5.7149 3.5443 4.2521 16 6 6.0872 3.7719 5.5636 17 6 6.3536 5.0589 6.0110 18 6 6.2568 6.1315 5.1547 19 6 5.8750 5.9275 3.8159 20 6 5.7687 7.0196 2.9321 21 1 6.0309 6.8995 1.8913 22 6 5.3221 8.2628 3.4039 23 7 4.5745 8.3253 4.4733 24 14 5.7964 9.8290 2.5030 25 1 5.2888 9.7710 1.1086 26 1 7.2754 9.9618 2.4862 27 1 5.2026 10.9990 3.1983 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8538 1.4009 -2.1823 34 1 4.3509 -0.1306 -1.3933 35 1 6.2502 1.4679 -2.4420 36 1 6.5289 0.7365 -0.8317 37 1 5.8228 3.5798 -1.5464 38 1 6.7824 2.9638 -0.1714 39 1 5.1607 2.3622 2.1191 40 1 5.5100 2.5383 3.9166 41 1 6.1709 2.9403 6.2475 42 1 6.6429 5.2190 7.0392 43 1 6.4701 7.1287 5.5104 44 1 4.2595 7.5097 4.8932 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601276561.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:51 Heat of formation + Delta-G solvation = -56.314152 kcal Electronic energy + Delta-G solvation = -24406.118160 eV Core-core repulsion = 21026.364772 eV Total energy + Delta-G solvation = -3379.753387 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.04726 -39.40475 -38.18888 -35.90144 -34.55064 -33.65803 -31.85880 -31.26798 -29.98249 -28.62001 -26.97108 -24.52633 -24.19313 -22.88517 -22.12467 -21.49984 -20.86903 -19.89466 -18.34688 -17.73821 -17.25765 -16.55201 -16.37394 -16.03276 -15.93374 -15.69181 -15.56964 -15.27909 -14.95531 -14.82920 -14.42606 -13.97866 -13.89863 -13.75739 -13.37935 -13.17613 -12.95353 -12.80229 -12.66802 -12.50405 -12.37534 -12.18534 -12.04685 -12.01453 -11.96223 -11.90778 -11.55108 -11.50668 -10.91160 -10.77823 -10.36792 -10.00443 -9.60117 -9.52556 -9.13075 -8.72156 -6.45476 0.40568 0.64073 0.90809 1.45066 1.60348 1.61631 1.75275 2.25166 2.29693 2.38114 2.70791 3.28130 3.53405 3.62185 3.89598 4.03702 4.08872 4.18327 4.19658 4.24497 4.31235 4.36664 4.42545 4.48618 4.53275 4.63435 4.76914 4.84616 4.87171 4.89886 4.91916 5.03481 5.10772 5.13123 5.14747 5.21489 5.33411 5.42226 5.60203 5.65352 5.70895 5.89506 5.96372 6.20535 6.33738 6.67739 6.84853 6.91354 7.61032 7.99922 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013384 B = 0.003661 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.575919 B = 7645.910647 C = 8057.168730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 S -0.318 6.318 4 C -0.049 4.049 5 H 0.109 0.891 6 C -0.105 4.105 7 C -0.108 4.108 8 C -0.131 4.131 9 C 0.166 3.834 10 H 0.055 0.945 11 N -0.719 5.719 12 C 0.560 3.440 13 O -0.578 6.578 14 C -0.285 4.285 15 C -0.040 4.040 16 C -0.246 4.246 17 C -0.071 4.071 18 C -0.225 4.225 19 C 0.099 3.901 20 C -0.515 4.515 21 H 0.080 0.920 22 C 0.001 3.999 23 N -0.809 5.809 24 Si 1.112 2.888 25 H -0.272 1.272 26 H -0.258 1.258 27 H -0.263 1.263 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.404 0.596 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.124 0.876 43 H 0.087 0.913 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 -19.246 -8.420 21.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.223 4.223 3 S -0.090 6.090 4 C -0.178 4.178 5 H 0.127 0.873 6 C -0.144 4.144 7 C -0.147 4.147 8 C -0.171 4.171 9 C 0.060 3.940 10 H 0.073 0.927 11 N -0.373 5.373 12 C 0.353 3.647 13 O -0.460 6.460 14 C -0.290 4.290 15 C -0.059 4.059 16 C -0.265 4.265 17 C -0.090 4.090 18 C -0.245 4.245 19 C 0.095 3.905 20 C -0.542 4.542 21 H 0.098 0.902 22 C -0.215 4.215 23 N -0.432 5.432 24 Si 0.930 3.070 25 H -0.197 1.197 26 H -0.182 1.182 27 H -0.187 1.187 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.241 0.759 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.142 0.858 43 H 0.106 0.894 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.329 -16.014 -8.828 18.434 hybrid contribution 0.653 -2.446 0.551 2.591 sum -1.676 -18.461 -8.278 20.301 Atomic orbital electron populations 1.21531 0.91872 1.03619 1.02430 1.23358 1.00341 0.92579 1.06018 1.87648 1.06743 1.16583 1.98046 1.24220 0.91646 0.98479 1.03463 0.87252 1.22824 0.95990 1.02027 0.93593 1.22325 0.96376 0.94086 1.01901 1.22542 0.96615 0.99466 0.98471 1.21211 0.95462 0.95351 0.82005 0.92721 1.45846 1.72083 1.07304 1.12073 1.18422 0.75973 0.82435 0.87823 1.90656 1.53247 1.43296 1.58772 1.19792 1.19511 0.95413 0.94244 1.21119 0.94600 0.96811 0.93358 1.20790 1.12881 0.96543 0.96247 1.21149 0.96320 0.93015 0.98499 1.21184 1.10054 0.98026 0.95215 1.17854 0.87849 0.92460 0.92363 1.21061 1.38678 0.95775 0.98720 0.90225 1.28449 0.91724 1.06230 0.95082 1.70499 1.21932 1.34305 1.16437 0.83079 0.78142 0.70696 0.75123 1.19748 1.18203 1.18743 0.88669 0.92966 0.92248 0.88279 0.89282 0.90309 0.88131 0.89475 0.89833 0.92204 0.92237 0.75883 0.84980 0.84590 0.85765 0.89436 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.92 71.98 0.71 -1.25 16 2 C -0.08 -1.17 6.62 71.98 0.48 -0.70 16 3 S -0.32 -8.13 20.99 -56.49 -1.19 -9.31 16 4 C -0.05 -1.09 3.06 31.67 0.10 -0.99 16 5 H 0.11 2.07 7.73 -2.39 -0.02 2.05 16 6 C -0.10 -1.69 6.30 31.88 0.20 -1.49 16 7 C -0.11 -1.84 6.83 31.67 0.22 -1.62 16 8 C -0.13 -3.55 6.58 31.32 0.21 -3.34 16 9 C 0.17 5.18 2.81 45.71 0.13 5.31 16 10 H 0.05 2.18 7.26 -2.39 -0.02 2.16 16 11 N -0.72 -25.53 4.94 -442.39 -2.19 -27.71 16 12 C 0.56 27.00 7.72 86.66 0.67 27.67 16 13 O -0.58 -32.96 13.24 -4.02 -0.05 -33.01 16 14 C -0.28 -14.13 5.92 -19.70 -0.12 -14.24 16 15 C -0.04 -1.61 9.52 22.50 0.21 -1.40 16 16 C -0.25 -9.44 10.03 22.41 0.22 -9.22 16 17 C -0.07 -3.05 10.01 22.26 0.22 -2.82 16 18 C -0.23 -11.60 8.11 22.72 0.18 -11.41 16 19 C 0.10 5.51 5.10 -21.11 -0.11 5.40 16 20 C -0.51 -30.47 7.60 23.41 0.18 -30.30 16 21 H 0.08 5.01 5.97 -2.91 -0.02 4.99 16 22 C 0.00 0.08 4.92 85.37 0.42 0.50 16 23 N -0.81 -46.20 12.67 21.88 0.28 -45.92 16 24 Si 1.11 48.10 30.00 68.60 2.06 50.16 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 27 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.38 8.05 -2.38 -0.02 1.36 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.79 7.92 -2.39 -0.02 1.77 16 39 H 0.40 11.71 6.39 -92.70 -0.59 11.12 16 40 H 0.13 4.07 6.42 -2.91 -0.02 4.05 16 41 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 42 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 43 H 0.09 4.69 7.16 -2.91 -0.02 4.67 16 44 H 0.28 16.59 7.02 -92.71 -0.65 15.94 16 Total: -1.00 -72.79 367.51 3.36 -69.42 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: 0.53 Total: 36.28 kcal Atomic # 6 Polarization: -43.83 SS G_CDS: 3.93 Total: -39.90 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -1.91 Total: -73.64 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.05 Total: -33.01 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.06 Total: 50.16 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.19 Total: -9.31 kcal Total: -72.79 3.36 -69.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601276561.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.108 kcal (2) G-P(sol) polarization free energy of solvation -72.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds