Wall clock time and date at job start Tue Mar 31 2020 12:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35963 * 117.00081 * 2 1 4 4 C 1.38657 * 119.95318 * 359.97438 * 3 2 1 5 5 C 1.38010 * 120.11855 * 180.02562 * 4 3 2 6 6 C 1.39329 * 120.02753 * 359.97438 * 5 4 3 7 7 C 1.48434 * 120.04381 * 179.97438 * 6 5 4 8 8 N 1.34061 * 126.67165 * 179.68660 * 7 6 5 9 9 N 1.28984 * 107.25995 * 179.83894 * 8 7 6 10 10 N 1.28723 * 108.95231 * 0.43805 * 9 8 7 11 11 C 1.46500 * 125.34199 * 179.70410 * 10 9 8 12 12 N 1.46504 * 109.47034 * 270.02333 * 11 10 9 13 13 C 1.46505 * 119.99686 * 269.99754 * 12 11 10 14 14 C 1.36936 * 120.00372 * 89.99832 * 12 11 10 15 15 H 1.08004 * 119.99381 * 22.33415 * 14 12 11 16 16 C 1.38807 * 120.00206 * 202.33394 * 14 12 11 17 17 N 1.31614 * 119.99854 * 11.33583 * 16 14 12 18 18 Si 1.86803 * 120.00050 * 191.33505 * 16 14 12 19 19 H 1.48499 * 109.46955 * 89.99857 * 18 16 14 20 20 H 1.48500 * 109.47321 * 210.00020 * 18 16 14 21 21 H 1.48500 * 109.46924 * 330.00188 * 18 16 14 22 22 N 1.28869 * 109.31859 * 359.72318 * 10 9 8 23 23 C 1.39333 * 119.91022 * 359.69165 * 6 5 4 24 24 C 1.38334 * 119.87936 * 0.60582 * 23 6 5 25 25 O 1.35996 * 120.01825 * 179.68373 * 24 23 6 26 26 C 1.42900 * 116.99583 * 359.72989 * 25 24 23 27 27 H 1.08997 * 109.46930 * 60.00031 * 1 2 3 28 28 H 1.09000 * 109.46820 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46554 * 299.99984 * 1 2 3 30 30 H 1.07993 * 119.94408 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.99241 * 179.97438 * 5 4 3 32 32 H 1.08994 * 109.47639 * 30.02089 * 11 10 9 33 33 H 1.08996 * 109.47292 * 150.02295 * 11 10 9 34 34 H 1.09003 * 109.47018 * 94.23271 * 13 12 11 35 35 H 1.09000 * 109.46997 * 214.22330 * 13 12 11 36 36 H 1.08993 * 109.47434 * 334.23398 * 13 12 11 37 37 H 0.97010 * 119.99867 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.06027 * 180.31986 * 23 6 5 39 39 H 1.08998 * 109.47151 * 179.97438 * 26 25 24 40 40 H 1.09003 * 109.47304 * 59.99663 * 26 25 24 41 41 H 1.09003 * 109.47127 * 299.99853 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 1.2902 2.3737 -0.0005 5 6 1.9133 3.6052 -0.0011 6 6 3.3044 3.6828 -0.0005 7 6 3.9748 5.0071 -0.0017 8 7 5.2958 5.2357 0.0045 9 7 5.4628 6.5147 -0.0026 10 7 4.3098 7.0869 -0.0036 11 6 4.0819 8.5341 -0.0048 12 7 4.0058 9.0175 1.3761 13 6 2.7144 9.0619 2.0665 14 6 5.1416 9.4279 2.0215 15 1 6.0037 9.7407 1.4510 16 6 5.1850 9.4419 3.4089 17 7 4.2316 8.8576 4.1030 18 14 6.5967 10.2900 4.2907 19 1 6.2448 11.7119 4.5349 20 1 6.8485 9.6124 5.5879 21 1 7.8189 10.2199 3.4501 22 7 3.3873 6.1870 -0.0030 23 6 4.0653 2.5156 0.0070 24 6 3.4370 1.2832 0.0013 25 8 4.1770 0.1422 0.0022 26 6 5.5982 0.2908 0.0032 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 0.2119 2.3153 -0.0005 31 1 1.3223 4.5091 -0.0019 32 1 4.9045 9.0311 -0.5188 33 1 3.1464 8.7542 -0.5189 34 1 2.5783 8.1463 2.6420 35 1 2.6908 9.9200 2.7382 36 1 1.9132 9.1524 1.3331 37 1 4.2617 8.8677 5.0725 38 1 5.1438 2.5729 0.0127 39 1 6.0665 -0.6935 0.0043 40 1 5.9056 0.8400 0.8932 41 1 5.9068 0.8394 -0.8868 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725771914.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:27 Heat of formation + Delta-G solvation = 89.144316 kcal Electronic energy + Delta-G solvation = -26282.714458 eV Core-core repulsion = 22395.268160 eV Total energy + Delta-G solvation = -3887.446298 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.90505 -41.55611 -39.43794 -38.27182 -37.84806 -35.21082 -34.01255 -33.18966 -31.48259 -31.11895 -28.65988 -28.13486 -28.08533 -28.00331 -24.93179 -24.75202 -23.31241 -22.46175 -22.43075 -19.66277 -19.19112 -18.61835 -18.10699 -17.98563 -17.49101 -17.04849 -16.75596 -16.20879 -16.13891 -15.75173 -15.59216 -15.43697 -15.41998 -14.78580 -14.31877 -14.03667 -13.78509 -13.73581 -13.37673 -13.12108 -13.03674 -12.92379 -12.67217 -12.50866 -12.35168 -12.27909 -12.24721 -12.13044 -12.08296 -12.07359 -11.78623 -11.75409 -11.06886 -10.90143 -9.76010 -9.40179 -8.80634 -8.11216 -5.67519 -0.17714 0.26523 0.55420 1.32818 1.43106 1.51023 1.52621 1.54525 2.27553 2.31233 2.34578 2.71142 2.88782 3.16521 3.29917 3.43677 3.80367 3.97451 3.99246 4.22797 4.25374 4.34759 4.39229 4.44194 4.48376 4.49427 4.55449 4.64071 4.67044 4.74515 4.81259 4.96320 5.07165 5.10938 5.18696 5.43043 5.44722 5.49768 5.52720 5.62749 6.00943 6.04578 6.52945 6.81021 7.42795 7.61342 7.83461 8.90100 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.003025 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.579452 B = 9255.291470 C = 9655.494874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.323 6.323 3 C 0.108 3.892 4 C -0.163 4.163 5 C -0.079 4.079 6 C -0.020 4.020 7 C 0.179 3.821 8 N -0.322 5.322 9 N -0.085 5.085 10 N -0.121 5.121 11 C 0.329 3.671 12 N -0.565 5.565 13 C 0.164 3.836 14 C -0.290 4.290 15 H 0.090 0.910 16 C -0.035 4.035 17 N -0.924 5.924 18 Si 0.979 3.021 19 H -0.272 1.272 20 H -0.297 1.297 21 H -0.266 1.266 22 N -0.313 5.313 23 C -0.140 4.140 24 C 0.085 3.915 25 O -0.320 6.320 26 C 0.017 3.983 27 H 0.071 0.929 28 H 0.120 0.880 29 H 0.067 0.933 30 H 0.176 0.824 31 H 0.142 0.858 32 H 0.125 0.875 33 H 0.134 0.866 34 H 0.001 0.999 35 H 0.040 0.960 36 H 0.051 0.949 37 H 0.256 0.744 38 H 0.144 0.856 39 H 0.126 0.874 40 H 0.055 0.945 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.559 -13.557 -10.086 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.237 6.237 3 C 0.061 3.939 4 C -0.181 4.181 5 C -0.100 4.100 6 C -0.024 4.024 7 C -0.100 4.100 8 N -0.192 5.192 9 N -0.078 5.078 10 N -0.046 5.046 11 C 0.124 3.876 12 N -0.283 5.283 13 C 0.020 3.980 14 C -0.420 4.420 15 H 0.107 0.893 16 C -0.233 4.233 17 N -0.566 5.566 18 Si 0.805 3.195 19 H -0.198 1.198 20 H -0.224 1.224 21 H -0.190 1.190 22 N -0.165 5.165 23 C -0.161 4.161 24 C 0.040 3.960 25 O -0.234 6.234 26 C -0.077 4.077 27 H 0.089 0.911 28 H 0.138 0.862 29 H 0.086 0.914 30 H 0.193 0.807 31 H 0.160 0.840 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.020 0.980 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.162 0.838 39 H 0.145 0.855 40 H 0.073 0.927 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.070 -13.305 -9.863 18.008 hybrid contribution 0.543 0.425 1.049 1.255 sum -6.527 -12.880 -8.814 16.917 Atomic orbital electron populations 1.23450 0.76121 1.05841 1.02679 1.86148 1.23601 1.25397 1.88516 1.18520 0.89002 0.86086 1.00280 1.21226 1.01619 0.89493 1.05752 1.21027 0.92062 0.98889 0.97981 1.17108 0.93131 0.85941 1.06222 1.23927 0.88175 0.93741 1.04184 1.75775 1.16525 1.06314 1.20586 1.78677 1.12420 1.00975 1.15712 1.53906 0.99551 1.12298 1.38813 1.23295 1.04971 0.70710 0.88608 1.45171 1.06110 1.65100 1.11937 1.20859 0.83622 0.99296 0.94213 1.19746 0.94601 1.37979 0.89700 0.89263 1.26044 1.00382 0.98980 0.97876 1.70254 1.35467 1.44594 1.06308 0.85107 0.78933 0.78113 0.77337 1.19780 1.22380 1.19033 1.74656 1.22305 0.97773 1.21810 1.21013 1.01019 0.89765 1.04264 1.18145 0.89001 0.85707 1.03195 1.86125 1.20403 1.27639 1.89195 1.23339 0.76947 1.05503 1.01908 0.91056 0.86206 0.91448 0.80724 0.84018 0.85746 0.84881 0.98015 0.94103 0.93080 0.93499 0.83818 0.85544 0.92666 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -7.41 10.27 -79.11 -0.81 -8.23 16 3 C 0.11 2.78 6.70 22.61 0.15 2.93 16 4 C -0.16 -3.67 9.02 22.32 0.20 -3.47 16 5 C -0.08 -2.22 9.69 22.48 0.22 -2.01 16 6 C -0.02 -0.69 5.88 -20.03 -0.12 -0.81 16 7 C 0.18 7.34 7.93 137.37 1.09 8.42 16 8 N -0.32 -14.23 12.23 -52.19 -0.64 -14.87 16 9 N -0.08 -3.88 13.23 37.02 0.49 -3.39 16 10 N -0.12 -5.12 4.23 -196.50 -0.83 -5.95 16 11 C 0.33 12.28 7.16 170.96 1.22 13.50 16 12 N -0.57 -26.11 3.17 -738.76 -2.34 -28.45 16 13 C 0.16 7.51 9.01 127.77 1.15 8.66 16 14 C -0.29 -14.86 9.67 84.03 0.81 -14.05 16 15 H 0.09 4.38 7.84 -2.91 -0.02 4.36 16 16 C -0.03 -1.84 5.13 84.86 0.44 -1.41 16 17 N -0.92 -52.61 10.58 21.65 0.23 -52.38 16 18 Si 0.98 43.23 29.57 68.60 2.03 45.26 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 N -0.31 -12.96 11.84 -52.14 -0.62 -13.58 16 23 C -0.14 -4.34 8.69 22.56 0.20 -4.14 16 24 C 0.09 2.44 6.69 22.54 0.15 2.59 16 25 O -0.32 -8.58 10.28 -79.48 -0.82 -9.40 16 26 C 0.02 0.34 9.81 113.37 1.11 1.45 16 27 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 28 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.70 7.66 -2.39 -0.02 0.69 16 30 H 0.18 2.57 6.28 -2.91 -0.02 2.56 16 31 H 0.14 3.82 7.87 -2.91 -0.02 3.80 16 32 H 0.12 4.13 8.03 -2.39 -0.02 4.11 16 33 H 0.13 3.95 7.86 -2.39 -0.02 3.93 16 34 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 35 H 0.04 1.99 7.19 -2.39 -0.02 1.97 16 36 H 0.05 1.89 7.84 -2.39 -0.02 1.87 16 37 H 0.26 14.20 8.31 -92.70 -0.77 13.42 16 38 H 0.14 4.40 6.11 -2.91 -0.02 4.38 16 39 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.05 1.11 7.65 -2.39 -0.02 1.09 16 41 H 0.06 1.15 7.67 -2.39 -0.02 1.13 16 Total: -1.00 -71.05 353.60 5.50 -65.55 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: 1.06 Total: 12.48 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 7.74 Total: 12.96 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -3.71 Total: -118.62 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -1.63 Total: -17.63 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -71.05 5.50 -65.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725771914.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.696 kcal (2) G-P(sol) polarization free energy of solvation -71.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds