Wall clock time and date at job start Tue Mar 31 2020 12:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81404 * 102.99663 * 2 1 4 4 H 1.08998 * 110.67735 * 56.78138 * 3 2 1 5 5 C 1.54891 * 110.75513 * 293.54514 * 3 2 1 6 6 C 1.54271 * 104.19498 * 203.74589 * 5 3 2 7 7 C 1.53870 * 106.59928 * 23.60751 * 6 5 3 8 8 H 1.08996 * 110.03375 * 240.67069 * 7 6 5 9 9 N 1.46500 * 110.03261 * 119.28591 * 7 6 5 10 10 C 1.34775 * 119.99921 * 87.09193 * 9 7 6 11 11 O 1.21276 * 120.00185 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99901 * 180.02562 * 10 9 7 13 13 C 1.50697 * 109.47324 * 180.02562 * 12 10 9 14 14 C 1.37649 * 120.12425 * 265.30447 * 13 12 10 15 15 C 1.38616 * 120.24645 * 180.31832 * 14 13 12 16 16 C 1.38666 * 120.49945 * 359.67026 * 15 14 13 17 17 C 1.37594 * 120.24746 * 359.97438 * 16 15 14 18 18 C 1.40692 * 120.13256 * 84.99414 * 13 12 10 19 19 C 1.41399 * 120.24302 * 359.97438 * 18 13 12 20 20 H 1.07998 * 119.99891 * 334.53354 * 19 18 13 21 21 C 1.39949 * 119.99925 * 154.53109 * 19 18 13 22 22 N 1.30822 * 119.99956 * 344.60316 * 21 19 18 23 23 Si 1.86801 * 119.99635 * 164.59621 * 21 19 18 24 24 H 1.48503 * 109.46960 * 269.99953 * 23 21 19 25 25 H 1.48500 * 109.47264 * 30.00061 * 23 21 19 26 26 H 1.48501 * 109.46810 * 150.00526 * 23 21 19 27 27 C 1.54271 * 106.64101 * 359.97438 * 7 6 5 28 28 H 1.09000 * 109.47216 * 300.00239 * 1 2 3 29 29 H 1.09003 * 109.47273 * 60.00244 * 1 2 3 30 30 H 1.08996 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.09000 * 110.48651 * 85.06646 * 5 3 2 32 32 H 1.09000 * 110.60153 * 322.47493 * 5 3 2 33 33 H 1.09003 * 110.02729 * 264.32329 * 6 5 3 34 34 H 1.09002 * 110.07173 * 142.91737 * 6 5 3 35 35 H 0.97003 * 119.99997 * 267.09431 * 9 7 6 36 36 H 1.08998 * 109.47701 * 59.99664 * 12 10 9 37 37 H 1.09001 * 109.47041 * 299.99644 * 12 10 9 38 38 H 1.07991 * 119.87654 * 0.02562 * 14 13 12 39 39 H 1.07996 * 119.75033 * 179.69384 * 15 14 13 40 40 H 1.08003 * 119.87226 * 180.02562 * 16 15 14 41 41 H 1.08005 * 120.12477 * 180.02562 * 17 16 15 42 42 H 0.97002 * 119.99826 * 180.02562 * 22 21 19 43 43 H 1.09001 * 110.48513 * 95.09280 * 27 7 6 44 44 H 1.09005 * 110.48684 * 217.73671 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7642 2.2682 0.8531 5 6 1.7817 2.4325 -1.3278 6 6 2.6888 3.6745 -1.4479 7 6 3.9445 3.3847 -0.6072 8 1 4.0388 4.1224 0.1896 9 7 5.1361 3.4115 -1.4591 10 6 5.7737 4.5763 -1.6894 11 8 5.3615 5.6022 -1.1910 12 6 6.9991 4.6040 -2.5662 13 6 7.5172 6.0159 -2.6610 14 6 7.1423 6.8202 -3.7133 15 6 7.6226 8.1171 -3.8065 16 6 8.4792 8.6216 -2.8397 17 6 8.8614 7.8379 -1.7753 18 6 8.3808 6.5193 -1.6709 19 6 8.7671 5.7047 -0.5816 20 1 8.1321 4.8909 -0.2641 21 6 9.9723 5.9530 0.0851 22 7 10.8769 6.7224 -0.4638 23 14 10.2890 5.1860 1.7586 24 1 9.7998 6.0995 2.8224 25 1 9.5727 3.8886 1.8522 26 1 11.7466 4.9604 1.9318 27 6 3.7574 1.9770 -0.0044 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.7339 2.7288 -1.2770 32 1 1.9460 1.7575 -2.1677 33 1 2.1732 4.5525 -1.0586 34 1 2.9660 3.8360 -2.4897 35 1 5.4660 2.5909 -1.8575 36 1 6.7416 4.2434 -3.5620 37 1 7.7686 3.9632 -2.1355 38 1 6.4753 6.4377 -4.4716 39 1 7.3272 8.7395 -4.6382 40 1 8.8470 9.6337 -2.9222 41 1 9.5283 8.2330 -1.0232 42 1 11.7123 6.8942 -0.0019 43 1 4.2427 1.2270 -0.6289 44 1 4.1510 1.9416 1.0115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776966257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:21 Heat of formation + Delta-G solvation = -35.701201 kcal Electronic energy + Delta-G solvation = -24142.257486 eV Core-core repulsion = 20763.397944 eV Total energy + Delta-G solvation = -3378.859542 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.62862 -37.98943 -36.96006 -33.58816 -33.32028 -31.62847 -29.47648 -29.38498 -28.96214 -27.98800 -26.23791 -24.87269 -21.41422 -21.07730 -20.85008 -19.93310 -19.23690 -17.15745 -17.00267 -16.49769 -15.99995 -15.61195 -15.30378 -14.54643 -14.47736 -14.32279 -13.92302 -13.65456 -13.55200 -13.41338 -13.23110 -12.95226 -12.55991 -12.35999 -12.01970 -11.78706 -11.62559 -11.51356 -11.40239 -11.19714 -11.12791 -10.96404 -10.94926 -10.70826 -10.62194 -10.35575 -10.12659 -9.45687 -9.32641 -9.14711 -9.10339 -8.69540 -7.97071 -7.26901 -7.25471 -6.69056 -4.30924 1.38553 2.26865 2.82046 3.01378 3.09594 3.12168 3.30779 3.36399 3.66485 3.96341 4.23070 4.41623 4.67086 4.70215 4.79820 4.82066 5.13931 5.15953 5.24266 5.29529 5.34610 5.40766 5.55647 5.58075 5.80295 5.83767 5.92472 6.03405 6.08177 6.13636 6.25589 6.32529 6.47755 6.55072 6.84067 6.87775 7.12397 7.34488 7.47000 7.68168 7.92673 8.00182 8.12219 8.17463 8.35596 8.69237 8.90645 8.95852 9.05780 10.24269 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.003215 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.534360 B = 8706.467537 C =10178.082490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.258 6.258 3 C -0.059 4.059 4 H 0.095 0.905 5 C -0.116 4.116 6 C -0.132 4.132 7 C 0.147 3.853 8 H 0.093 0.907 9 N -0.740 5.740 10 C 0.515 3.485 11 O -0.520 6.520 12 C -0.072 4.072 13 C -0.180 4.180 14 C -0.082 4.082 15 C -0.240 4.240 16 C -0.108 4.108 17 C -0.160 4.160 18 C 0.127 3.873 19 C -0.455 4.455 20 H 0.074 0.926 21 C 0.076 3.924 22 N -0.797 5.797 23 Si 0.904 3.096 24 H -0.268 1.268 25 H -0.263 1.263 26 H -0.278 1.278 27 C -0.105 4.105 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.396 0.604 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.119 0.881 42 H 0.279 0.721 43 H 0.083 0.917 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.883 -12.119 0.284 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.030 6.030 3 C -0.188 4.188 4 H 0.113 0.887 5 C -0.155 4.155 6 C -0.172 4.172 7 C 0.041 3.959 8 H 0.111 0.889 9 N -0.394 5.394 10 C 0.303 3.697 11 O -0.393 6.393 12 C -0.111 4.111 13 C -0.182 4.182 14 C -0.100 4.100 15 C -0.259 4.259 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.125 3.875 19 C -0.485 4.485 20 H 0.092 0.908 21 C -0.141 4.141 22 N -0.422 5.422 23 Si 0.729 3.271 24 H -0.194 1.194 25 H -0.187 1.187 26 H -0.204 1.204 27 C -0.144 4.144 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.230 0.770 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.266 -12.171 0.720 18.766 hybrid contribution -0.548 0.333 0.618 0.890 sum -14.814 -11.838 1.338 19.010 Atomic orbital electron populations 1.23362 0.94449 1.06294 1.04946 1.86864 1.07182 1.11047 1.97903 1.24167 1.00015 0.93100 1.01488 0.88691 1.22721 0.99454 0.97415 0.95944 1.22607 0.95724 0.97372 1.01513 1.21421 0.84984 0.96378 0.93158 0.88940 1.46292 1.29666 1.10824 1.52603 1.21251 0.84637 0.82613 0.81212 1.90674 1.66292 1.32843 1.49528 1.20275 0.94390 0.98612 0.97854 1.19057 1.07543 0.93575 0.98004 1.20293 0.98512 0.94200 0.97010 1.20309 1.07081 0.96654 1.01879 1.20681 0.98304 0.97780 0.95872 1.21352 1.03617 0.94051 0.98905 1.17347 0.88658 0.91327 0.90168 1.19484 1.03335 1.13608 1.12030 0.90793 1.25885 0.95520 0.94166 0.98563 1.69817 1.05637 1.30267 1.36518 0.86376 0.77875 0.80339 0.82491 1.19361 1.18732 1.20357 1.22467 0.92430 0.96894 1.02636 0.90587 0.90442 0.88277 0.91575 0.90253 0.91085 0.90675 0.77046 0.90662 0.88590 0.89826 0.89722 0.89627 0.86308 0.91015 0.89888 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.63 101.05 1.07 0.29 16 2 S -0.26 -2.40 21.83 -107.50 -2.35 -4.74 16 3 C -0.06 -0.53 3.42 -24.70 -0.08 -0.61 16 4 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.12 -1.02 6.16 -25.07 -0.15 -1.17 16 6 C -0.13 -1.48 6.59 -25.61 -0.17 -1.65 16 7 C 0.15 1.86 3.23 -66.81 -0.22 1.64 16 8 H 0.09 1.39 7.59 -51.93 -0.39 0.99 16 9 N -0.74 -10.40 4.99 -52.72 -0.26 -10.66 16 10 C 0.52 9.82 7.46 -10.99 -0.08 9.74 16 11 O -0.52 -12.24 15.70 5.56 0.09 -12.15 16 12 C -0.07 -1.39 5.18 -29.04 -0.15 -1.54 16 13 C -0.18 -4.35 4.43 -103.91 -0.46 -4.81 16 14 C -0.08 -1.91 9.66 -39.66 -0.38 -2.29 16 15 C -0.24 -5.65 10.05 -39.28 -0.39 -6.05 16 16 C -0.11 -2.67 10.02 -39.66 -0.40 -3.06 16 17 C -0.16 -4.32 8.69 -38.87 -0.34 -4.66 16 18 C 0.13 3.43 5.57 -106.83 -0.60 2.83 16 19 C -0.45 -12.02 8.16 -37.74 -0.31 -12.32 16 20 H 0.07 1.90 6.65 -52.49 -0.35 1.55 16 21 C 0.08 1.91 5.19 -17.34 -0.09 1.82 16 22 N -0.80 -20.71 10.86 55.55 0.60 -20.11 16 23 Si 0.90 19.02 29.59 -169.99 -5.03 14.00 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 27 C -0.11 -1.06 5.99 -25.03 -0.15 -1.21 16 28 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.70 8.05 -51.93 -0.42 0.29 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.92 7.92 -51.93 -0.41 0.51 16 35 H 0.40 4.43 8.35 -40.82 -0.34 4.09 16 36 H 0.08 1.22 8.06 -51.93 -0.42 0.81 16 37 H 0.10 1.84 7.05 -51.93 -0.37 1.48 16 38 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 40 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 41 H 0.12 3.30 6.12 -52.48 -0.32 2.98 16 42 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 43 H 0.08 0.81 7.64 -51.93 -0.40 0.42 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 371.61 15.07 5.60 5.60 Total: -1.00 -30.74 371.61 -11.02 -41.77 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -6.78 Total: 9.37 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -2.90 Total: -23.06 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.34 Total: -30.77 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.35 Total: -4.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.74 -11.02 -41.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776966257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.065 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds