Wall clock time and date at job start Tue Mar 31 2020 12:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81404 * 102.99663 * 2 1 4 4 H 1.08998 * 110.67735 * 56.78138 * 3 2 1 5 5 C 1.54891 * 110.75513 * 293.54514 * 3 2 1 6 6 C 1.54271 * 104.19498 * 203.74589 * 5 3 2 7 7 C 1.53870 * 106.59928 * 23.60751 * 6 5 3 8 8 H 1.08996 * 110.03375 * 240.67069 * 7 6 5 9 9 N 1.46500 * 110.03261 * 119.28591 * 7 6 5 10 10 C 1.34775 * 119.99921 * 87.09193 * 9 7 6 11 11 O 1.21276 * 120.00185 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99901 * 180.02562 * 10 9 7 13 13 C 1.50697 * 109.47324 * 180.02562 * 12 10 9 14 14 C 1.37649 * 120.12425 * 265.30447 * 13 12 10 15 15 C 1.38616 * 120.24645 * 180.31832 * 14 13 12 16 16 C 1.38666 * 120.49945 * 359.67026 * 15 14 13 17 17 C 1.37594 * 120.24746 * 359.97438 * 16 15 14 18 18 C 1.40692 * 120.13256 * 84.99414 * 13 12 10 19 19 C 1.41399 * 120.24302 * 359.97438 * 18 13 12 20 20 H 1.07998 * 119.99891 * 334.53354 * 19 18 13 21 21 C 1.39949 * 119.99925 * 154.53109 * 19 18 13 22 22 N 1.30822 * 119.99956 * 344.60316 * 21 19 18 23 23 Si 1.86801 * 119.99635 * 164.59621 * 21 19 18 24 24 H 1.48503 * 109.46960 * 269.99953 * 23 21 19 25 25 H 1.48500 * 109.47264 * 30.00061 * 23 21 19 26 26 H 1.48501 * 109.46810 * 150.00526 * 23 21 19 27 27 C 1.54271 * 106.64101 * 359.97438 * 7 6 5 28 28 H 1.09000 * 109.47216 * 300.00239 * 1 2 3 29 29 H 1.09003 * 109.47273 * 60.00244 * 1 2 3 30 30 H 1.08996 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.09000 * 110.48651 * 85.06646 * 5 3 2 32 32 H 1.09000 * 110.60153 * 322.47493 * 5 3 2 33 33 H 1.09003 * 110.02729 * 264.32329 * 6 5 3 34 34 H 1.09002 * 110.07173 * 142.91737 * 6 5 3 35 35 H 0.97003 * 119.99997 * 267.09431 * 9 7 6 36 36 H 1.08998 * 109.47701 * 59.99664 * 12 10 9 37 37 H 1.09001 * 109.47041 * 299.99644 * 12 10 9 38 38 H 1.07991 * 119.87654 * 0.02562 * 14 13 12 39 39 H 1.07996 * 119.75033 * 179.69384 * 15 14 13 40 40 H 1.08003 * 119.87226 * 180.02562 * 16 15 14 41 41 H 1.08005 * 120.12477 * 180.02562 * 17 16 15 42 42 H 0.97002 * 119.99826 * 180.02562 * 22 21 19 43 43 H 1.09001 * 110.48513 * 95.09280 * 27 7 6 44 44 H 1.09005 * 110.48684 * 217.73671 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7642 2.2682 0.8531 5 6 1.7817 2.4325 -1.3278 6 6 2.6888 3.6745 -1.4479 7 6 3.9445 3.3847 -0.6072 8 1 4.0388 4.1224 0.1896 9 7 5.1361 3.4115 -1.4591 10 6 5.7737 4.5763 -1.6894 11 8 5.3615 5.6022 -1.1910 12 6 6.9991 4.6040 -2.5662 13 6 7.5172 6.0159 -2.6610 14 6 7.1423 6.8202 -3.7133 15 6 7.6226 8.1171 -3.8065 16 6 8.4792 8.6216 -2.8397 17 6 8.8614 7.8379 -1.7753 18 6 8.3808 6.5193 -1.6709 19 6 8.7671 5.7047 -0.5816 20 1 8.1321 4.8909 -0.2641 21 6 9.9723 5.9530 0.0851 22 7 10.8769 6.7224 -0.4638 23 14 10.2890 5.1860 1.7586 24 1 9.7998 6.0995 2.8224 25 1 9.5727 3.8886 1.8522 26 1 11.7466 4.9604 1.9318 27 6 3.7574 1.9770 -0.0044 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.7339 2.7288 -1.2770 32 1 1.9460 1.7575 -2.1677 33 1 2.1732 4.5525 -1.0586 34 1 2.9660 3.8360 -2.4897 35 1 5.4660 2.5909 -1.8575 36 1 6.7416 4.2434 -3.5620 37 1 7.7686 3.9632 -2.1355 38 1 6.4753 6.4377 -4.4716 39 1 7.3272 8.7395 -4.6382 40 1 8.8470 9.6337 -2.9222 41 1 9.5283 8.2330 -1.0232 42 1 11.7123 6.8942 -0.0019 43 1 4.2427 1.2270 -0.6289 44 1 4.1510 1.9416 1.0115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776966257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:20 Heat of formation + Delta-G solvation = -51.902438 kcal Electronic energy + Delta-G solvation = -24142.960024 eV Core-core repulsion = 20763.397944 eV Total energy + Delta-G solvation = -3379.562081 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98789 -39.46352 -38.44243 -35.49345 -34.60283 -33.34569 -31.32662 -30.10765 -29.77900 -29.17931 -27.73268 -26.68695 -22.83131 -22.55409 -22.14749 -21.12142 -20.82345 -19.05849 -17.94604 -17.84147 -17.26741 -16.88559 -16.62312 -16.15418 -16.04365 -15.42930 -15.17849 -14.95863 -14.70067 -14.37615 -14.32811 -14.24072 -14.04154 -13.56451 -13.35687 -13.16104 -12.93688 -12.89403 -12.74588 -12.69612 -12.53201 -12.44544 -12.18780 -12.09086 -11.95453 -11.62804 -11.31715 -11.18755 -11.03835 -10.79447 -10.69749 -9.96683 -9.21479 -9.14919 -8.66452 -8.57683 -6.28656 0.72780 1.00264 1.14999 1.35955 1.47812 1.53707 1.64975 1.87430 2.20046 2.39889 2.79876 3.41970 3.55161 3.79829 3.86648 4.18198 4.26531 4.32218 4.35536 4.37583 4.40689 4.41909 4.43947 4.50063 4.58026 4.64401 4.72802 4.78966 4.83083 4.91256 5.00905 5.04467 5.11084 5.18113 5.21481 5.24435 5.39232 5.56641 5.68687 5.78878 6.05296 6.18522 6.22946 6.43260 6.69787 6.77486 7.00559 7.12825 7.49493 8.37920 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.003215 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.534360 B = 8706.467537 C =10178.082490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.292 6.292 3 C -0.050 4.050 4 H 0.099 0.901 5 C -0.103 4.103 6 C -0.128 4.128 7 C 0.144 3.856 8 H 0.064 0.936 9 N -0.719 5.719 10 C 0.518 3.482 11 O -0.573 6.573 12 C -0.071 4.071 13 C -0.186 4.186 14 C -0.092 4.092 15 C -0.243 4.243 16 C -0.118 4.118 17 C -0.196 4.196 18 C 0.094 3.906 19 C -0.480 4.480 20 H 0.072 0.928 21 C 0.034 3.966 22 N -0.828 5.828 23 Si 0.972 3.028 24 H -0.271 1.271 25 H -0.256 1.256 26 H -0.265 1.265 27 C -0.098 4.098 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.413 0.587 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.099 0.901 42 H 0.285 0.715 43 H 0.091 0.909 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.626 -14.193 -0.205 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.064 6.064 3 C -0.179 4.179 4 H 0.117 0.883 5 C -0.143 4.143 6 C -0.168 4.168 7 C 0.037 3.963 8 H 0.082 0.918 9 N -0.373 5.373 10 C 0.306 3.694 11 O -0.451 6.451 12 C -0.110 4.110 13 C -0.188 4.188 14 C -0.110 4.110 15 C -0.262 4.262 16 C -0.137 4.137 17 C -0.215 4.215 18 C 0.091 3.909 19 C -0.510 4.510 20 H 0.090 0.910 21 C -0.180 4.180 22 N -0.454 5.454 23 Si 0.794 3.206 24 H -0.196 1.196 25 H -0.179 1.179 26 H -0.190 1.190 27 C -0.137 4.137 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.128 0.872 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.250 0.750 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.109 0.891 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.018 -14.299 0.207 21.473 hybrid contribution -0.091 0.980 0.679 1.196 sum -16.109 -13.319 0.886 20.921 Atomic orbital electron populations 1.23433 0.91551 1.07336 1.05834 1.86991 1.10428 1.11032 1.97992 1.24060 0.98920 0.93152 1.01788 0.88275 1.22647 0.99712 0.95981 0.95929 1.22518 0.95360 0.98447 1.00460 1.21516 0.84839 0.97377 0.92548 0.91785 1.46065 1.29411 1.10066 1.51714 1.21095 0.84508 0.83078 0.80693 1.90658 1.67795 1.34929 1.51695 1.20294 0.94554 0.96066 1.00133 1.19552 1.06187 0.95856 0.97166 1.20737 0.98618 0.94167 0.97495 1.20725 1.06050 0.97326 1.02116 1.20952 0.98554 0.98567 0.95607 1.21366 1.05126 0.95087 0.99925 1.17754 0.89995 0.91619 0.91485 1.19632 1.04081 1.14169 1.13111 0.91032 1.26683 0.94920 0.94567 1.01819 1.69882 1.06168 1.31358 1.38012 0.85353 0.78338 0.79482 0.77473 1.19635 1.17941 1.18965 1.22382 0.93727 0.95135 1.02409 0.89785 0.89473 0.87180 0.89943 0.89757 0.91863 0.91451 0.75040 0.86963 0.88576 0.86550 0.86730 0.87771 0.88330 0.90419 0.89099 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.63 113.37 1.21 0.08 16 2 S -0.29 -4.78 21.83 -56.49 -1.23 -6.01 16 3 C -0.05 -0.80 3.42 31.91 0.11 -0.69 16 4 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 5 C -0.10 -1.57 6.16 31.67 0.20 -1.37 16 6 C -0.13 -2.72 6.59 31.32 0.21 -2.52 16 7 C 0.14 3.53 3.23 45.72 0.15 3.67 16 8 H 0.06 1.97 7.59 -2.39 -0.02 1.95 16 9 N -0.72 -19.45 4.99 -439.11 -2.19 -21.64 16 10 C 0.52 19.59 7.46 87.66 0.65 20.24 16 11 O -0.57 -27.51 15.70 -3.02 -0.05 -27.55 16 12 C -0.07 -2.69 5.18 29.10 0.15 -2.54 16 13 C -0.19 -8.99 4.43 -19.40 -0.09 -9.08 16 14 C -0.09 -4.18 9.66 22.22 0.21 -3.96 16 15 C -0.24 -11.21 10.05 22.46 0.23 -10.98 16 16 C -0.12 -5.93 10.02 22.22 0.22 -5.71 16 17 C -0.20 -10.99 8.69 22.73 0.20 -10.80 16 18 C 0.09 5.20 5.57 -21.29 -0.12 5.08 16 19 C -0.48 -26.16 8.16 23.46 0.19 -25.97 16 20 H 0.07 3.79 6.65 -2.91 -0.02 3.77 16 21 C 0.03 1.77 5.19 85.26 0.44 2.21 16 22 N -0.83 -44.45 10.86 21.83 0.24 -44.22 16 23 Si 0.97 39.58 29.59 68.60 2.03 41.61 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 26 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 27 C -0.10 -1.83 5.99 31.70 0.19 -1.64 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.25 8.05 -2.39 -0.02 1.23 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.07 1.55 7.92 -2.39 -0.02 1.53 16 35 H 0.41 8.40 8.35 -92.71 -0.77 7.62 16 36 H 0.11 3.35 8.06 -2.39 -0.02 3.33 16 37 H 0.10 3.65 7.05 -2.39 -0.02 3.63 16 38 H 0.12 4.43 8.06 -2.92 -0.02 4.40 16 39 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 41 H 0.10 5.80 6.12 -2.91 -0.02 5.78 16 42 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 43 H 0.09 1.58 7.64 -2.39 -0.02 1.56 16 44 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -69.21 371.61 3.17 -66.04 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: 0.22 Total: 35.75 kcal Atomic # 6 Polarization: -48.12 SS G_CDS: 4.15 Total: -43.98 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -1.95 Total: -65.86 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.05 Total: -27.55 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -1.23 Total: -6.01 kcal Total: -69.21 3.17 -66.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776966257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.136 kcal (2) G-P(sol) polarization free energy of solvation -69.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds