Wall clock time and date at job start Tue Mar 31 2020 12:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81400 * 102.99882 * 2 1 4 4 C 1.53007 * 109.46883 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.99748 * 177.07773 * 4 3 2 6 6 C 1.54334 * 109.99058 * 56.04006 * 4 3 2 7 7 C 1.55153 * 103.02013 * 218.66240 * 6 4 3 8 8 C 1.54908 * 101.58219 * 35.31069 * 7 6 4 9 9 N 1.47017 * 109.88321 * 298.17521 * 4 3 2 10 10 C 1.34783 * 125.64852 * 298.39238 * 9 4 3 11 11 O 1.21277 * 119.99967 * 354.68101 * 10 9 4 12 12 C 1.50702 * 119.99978 * 174.67116 * 10 9 4 13 13 C 1.50703 * 109.46774 * 180.02562 * 12 10 9 14 14 C 1.37641 * 120.12783 * 264.99813 * 13 12 10 15 15 C 1.38605 * 120.24815 * 180.02562 * 14 13 12 16 16 C 1.38653 * 120.50295 * 359.97438 * 15 14 13 17 17 C 1.37597 * 120.24952 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12779 * 85.02920 * 13 12 10 19 19 C 1.41398 * 120.24588 * 359.94756 * 18 13 12 20 20 H 1.08000 * 119.99832 * 330.56473 * 19 18 13 21 21 C 1.39941 * 120.00129 * 150.55649 * 19 18 13 22 22 N 1.30831 * 119.99785 * 350.26647 * 21 19 18 23 23 Si 1.86799 * 120.00169 * 170.26958 * 21 19 18 24 24 H 1.48496 * 109.47046 * 60.00068 * 23 21 19 25 25 H 1.48499 * 109.47006 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46920 * 300.00033 * 23 21 19 27 27 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46253 * 299.99508 * 1 2 3 29 29 H 1.08992 * 109.46982 * 59.99900 * 1 2 3 30 30 H 1.09002 * 109.47231 * 60.00671 * 3 2 1 31 31 H 1.08998 * 109.47359 * 300.00192 * 3 2 1 32 32 H 1.09002 * 110.84647 * 100.20016 * 6 4 3 33 33 H 1.08991 * 110.67119 * 337.04828 * 6 4 3 34 34 H 1.08998 * 111.00735 * 277.23478 * 7 6 4 35 35 H 1.09004 * 111.03760 * 153.39733 * 7 6 4 36 36 H 1.09002 * 110.36932 * 204.15076 * 8 7 6 37 37 H 1.08997 * 110.36926 * 81.82448 * 8 7 6 38 38 H 1.09003 * 109.46711 * 60.00775 * 12 10 9 39 39 H 1.08998 * 109.47504 * 300.00228 * 12 10 9 40 40 H 1.08004 * 119.87292 * 0.02562 * 14 13 12 41 41 H 1.08006 * 119.74994 * 180.02562 * 15 14 13 42 42 H 1.08004 * 119.87392 * 179.74049 * 16 15 14 43 43 H 1.08004 * 120.13054 * 179.97438 * 17 16 15 44 44 H 0.96996 * 119.99869 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 3.9975 2.9983 -0.0529 6 6 4.3574 1.1945 -1.2040 7 6 5.6621 0.5962 -0.6148 8 6 5.2222 0.2533 0.8303 9 7 4.3133 1.3475 1.2178 10 6 4.0457 1.7366 2.4802 11 8 3.3505 2.7100 2.6802 12 6 4.6102 0.9619 3.6431 13 6 4.1648 1.5986 4.9343 14 6 4.9768 2.5089 5.5718 15 6 4.5698 3.0956 6.7598 16 6 3.3426 2.7742 7.3193 17 6 2.5145 1.8668 6.6994 18 6 2.9176 1.2643 5.4932 19 6 2.0748 0.3308 4.8470 20 1 2.1084 0.2263 3.7726 21 6 1.1973 -0.4578 5.5996 22 7 1.2869 -0.4727 6.9047 23 14 -0.1020 -1.4893 4.7408 24 1 0.5580 -2.4576 3.8287 25 1 -0.8973 -2.2277 5.7543 26 1 -0.9990 -0.6028 3.9567 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8032 2.2371 0.8900 31 1 1.8031 2.2372 -0.8899 32 1 4.5826 1.8868 -2.0152 33 1 3.6913 0.4033 -1.5478 34 1 6.4647 1.3337 -0.6143 35 1 5.9600 -0.3019 -1.1560 36 1 6.0867 0.2254 1.4936 37 1 4.6966 -0.7014 0.8505 38 1 5.6989 0.9695 3.5904 39 1 4.2516 -0.0666 3.6029 40 1 5.9346 2.7670 5.1447 41 1 5.2132 3.8093 7.2530 42 1 3.0375 3.2343 8.2475 43 1 1.5592 1.6175 7.1372 44 1 0.6785 -1.0190 7.4264 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777410046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:03 Heat of formation + Delta-G solvation = -20.982976 kcal Electronic energy + Delta-G solvation = -25381.167225 eV Core-core repulsion = 22002.945912 eV Total energy + Delta-G solvation = -3378.221312 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.82865 -37.80281 -36.62474 -33.51265 -32.25301 -31.21257 -30.97824 -29.35604 -28.83208 -26.70462 -25.81219 -24.93278 -22.62701 -21.20331 -20.83507 -19.72433 -18.45720 -17.05692 -16.80915 -16.31713 -15.65908 -15.36028 -14.73106 -14.48786 -14.34858 -13.91206 -13.86677 -13.58312 -13.40039 -13.25137 -13.20261 -12.76371 -12.53488 -12.40538 -12.02276 -11.68064 -11.57504 -11.46124 -11.22951 -11.19214 -11.06829 -10.92800 -10.90746 -10.83486 -10.58618 -10.32125 -9.76283 -9.42662 -9.29043 -9.12132 -9.06824 -8.27785 -7.42008 -7.24291 -7.17050 -6.60815 -4.27363 1.81546 2.72991 2.85253 3.01887 3.10119 3.14179 3.32356 3.38013 3.50371 4.01485 4.51694 4.56044 4.76707 4.85785 5.09447 5.19643 5.22668 5.27050 5.37984 5.45389 5.51987 5.68800 5.76065 5.80845 5.83755 5.87457 5.94389 5.97214 6.10162 6.18569 6.22993 6.34187 6.52365 6.56655 6.72044 6.87576 7.19649 7.36923 7.49697 7.72696 7.96279 8.02018 8.17484 8.19698 8.40092 8.74196 8.91110 9.01459 9.09310 10.32988 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.006098 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.734485 B = 4590.202794 C = 6379.886573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.243 6.243 3 C -0.100 4.100 4 C 0.156 3.844 5 H 0.083 0.917 6 C -0.135 4.135 7 C -0.130 4.130 8 C 0.102 3.898 9 N -0.622 5.622 10 C 0.538 3.462 11 O -0.522 6.522 12 C -0.065 4.065 13 C -0.176 4.176 14 C -0.085 4.085 15 C -0.236 4.236 16 C -0.110 4.110 17 C -0.154 4.154 18 C 0.128 3.872 19 C -0.453 4.453 20 H 0.076 0.924 21 C 0.076 3.924 22 N -0.805 5.805 23 Si 0.902 3.098 24 H -0.263 1.263 25 H -0.280 1.280 26 H -0.267 1.267 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.119 0.881 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.821 -1.306 -15.267 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S -0.018 6.018 3 C -0.249 4.249 4 C 0.051 3.949 5 H 0.101 0.899 6 C -0.173 4.173 7 C -0.168 4.168 8 C -0.021 4.021 9 N -0.359 5.359 10 C 0.329 3.671 11 O -0.397 6.397 12 C -0.105 4.105 13 C -0.178 4.178 14 C -0.103 4.103 15 C -0.255 4.255 16 C -0.129 4.129 17 C -0.173 4.173 18 C 0.126 3.874 19 C -0.484 4.484 20 H 0.095 0.905 21 C -0.140 4.140 22 N -0.432 5.432 23 Si 0.727 3.273 24 H -0.188 1.188 25 H -0.205 1.205 26 H -0.192 1.192 27 H 0.116 0.884 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.966 -1.723 -14.825 15.443 hybrid contribution -1.588 0.531 -0.251 1.693 sum 2.377 -1.192 -15.077 15.309 Atomic orbital electron populations 1.23398 0.95330 1.06210 1.04766 1.86608 1.06314 1.11140 1.97745 1.23921 1.00210 0.95107 1.05709 1.21159 0.89843 0.98277 0.85619 0.89942 1.22845 0.97341 1.00732 0.96380 1.22737 0.97247 1.01362 0.95489 1.22265 0.93300 0.91108 0.95420 1.48674 1.46718 1.35691 1.04829 1.20901 0.80019 0.84395 0.81818 1.90655 1.37859 1.27029 1.84110 1.20246 0.99101 1.00297 0.90814 1.19135 0.96440 1.04886 0.97326 1.20296 0.97507 0.96915 0.95575 1.20311 0.98818 1.06900 0.99485 1.20689 0.95117 0.98758 0.98333 1.21353 1.00056 0.97645 0.98240 1.17355 0.89406 0.89559 0.91122 1.19481 1.17102 1.16979 0.94802 0.90548 1.25835 0.96902 0.96645 0.94636 1.69791 1.33492 1.33840 1.06070 0.86459 0.80903 0.80081 0.79882 1.18784 1.20542 1.19151 0.88412 0.90332 0.90932 0.88473 0.89956 0.90407 0.88949 0.90891 0.90001 0.90674 0.91040 0.90959 0.88427 0.89851 0.89726 0.89641 0.86349 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 10.76 101.05 1.09 -0.55 16 2 S -0.24 -3.53 20.22 -107.50 -2.17 -5.71 16 3 C -0.10 -1.43 5.65 37.16 0.21 -1.22 16 4 C 0.16 2.10 3.13 -66.95 -0.21 1.89 16 5 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 6 C -0.13 -1.33 6.25 -24.89 -0.16 -1.49 16 7 C -0.13 -1.20 7.09 -24.59 -0.17 -1.37 16 8 C 0.10 1.25 6.65 -2.53 -0.02 1.23 16 9 N -0.62 -9.76 2.68 -163.01 -0.44 -10.20 16 10 C 0.54 10.88 7.20 -10.98 -0.08 10.80 16 11 O -0.52 -12.64 15.24 5.56 0.08 -12.56 16 12 C -0.07 -1.33 4.28 -29.03 -0.12 -1.46 16 13 C -0.18 -4.34 4.43 -103.91 -0.46 -4.80 16 14 C -0.08 -2.00 9.66 -39.66 -0.38 -2.38 16 15 C -0.24 -5.61 10.05 -39.29 -0.39 -6.00 16 16 C -0.11 -2.75 10.02 -39.66 -0.40 -3.15 16 17 C -0.15 -4.19 8.66 -38.87 -0.34 -4.52 16 18 C 0.13 3.49 5.55 -106.82 -0.59 2.90 16 19 C -0.45 -12.18 8.06 -37.74 -0.30 -12.48 16 20 H 0.08 2.04 6.78 -52.49 -0.36 1.68 16 21 C 0.08 1.95 5.27 -17.34 -0.09 1.86 16 22 N -0.81 -21.30 10.84 55.55 0.60 -20.70 16 23 Si 0.90 19.43 29.57 -169.99 -5.03 14.41 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 27 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 1.74 6.97 -51.92 -0.36 1.38 16 31 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.95 6.31 -51.93 -0.33 0.63 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.84 7.51 -51.93 -0.39 0.45 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.26 7.68 -51.93 -0.40 0.86 16 39 H 0.10 2.03 7.12 -51.93 -0.37 1.66 16 40 H 0.08 1.74 8.06 -52.48 -0.42 1.32 16 41 H 0.08 1.78 8.06 -52.48 -0.42 1.36 16 42 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 43 H 0.12 3.32 6.24 -52.48 -0.33 3.00 16 44 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 LS Contribution 366.93 15.07 5.53 5.53 Total: -1.00 -31.05 366.93 -10.58 -41.63 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.74 Total: 8.36 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -2.42 Total: -20.77 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.16 Total: -30.89 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.08 Total: -12.56 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.41 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.17 Total: -5.71 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.05 -10.58 -41.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777410046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.648 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds