Wall clock time and date at job start Tue Mar 31 2020 12:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.81400 * 102.99882 * 2 1 4 4 C 1.53007 * 109.46883 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.99748 * 177.07773 * 4 3 2 6 6 C 1.54334 * 109.99058 * 56.04006 * 4 3 2 7 7 C 1.55153 * 103.02013 * 218.66240 * 6 4 3 8 8 C 1.54908 * 101.58219 * 35.31069 * 7 6 4 9 9 N 1.47017 * 109.88321 * 298.17521 * 4 3 2 10 10 C 1.34783 * 125.64852 * 298.39238 * 9 4 3 11 11 O 1.21277 * 119.99967 * 354.68101 * 10 9 4 12 12 C 1.50702 * 119.99978 * 174.67116 * 10 9 4 13 13 C 1.50703 * 109.46774 * 180.02562 * 12 10 9 14 14 C 1.37641 * 120.12783 * 264.99813 * 13 12 10 15 15 C 1.38605 * 120.24815 * 180.02562 * 14 13 12 16 16 C 1.38653 * 120.50295 * 359.97438 * 15 14 13 17 17 C 1.37597 * 120.24952 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12779 * 85.02920 * 13 12 10 19 19 C 1.41398 * 120.24588 * 359.94756 * 18 13 12 20 20 H 1.08000 * 119.99832 * 330.56473 * 19 18 13 21 21 C 1.39941 * 120.00129 * 150.55649 * 19 18 13 22 22 N 1.30831 * 119.99785 * 350.26647 * 21 19 18 23 23 Si 1.86799 * 120.00169 * 170.26958 * 21 19 18 24 24 H 1.48496 * 109.47046 * 60.00068 * 23 21 19 25 25 H 1.48499 * 109.47006 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46920 * 300.00033 * 23 21 19 27 27 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46253 * 299.99508 * 1 2 3 29 29 H 1.08992 * 109.46982 * 59.99900 * 1 2 3 30 30 H 1.09002 * 109.47231 * 60.00671 * 3 2 1 31 31 H 1.08998 * 109.47359 * 300.00192 * 3 2 1 32 32 H 1.09002 * 110.84647 * 100.20016 * 6 4 3 33 33 H 1.08991 * 110.67119 * 337.04828 * 6 4 3 34 34 H 1.08998 * 111.00735 * 277.23478 * 7 6 4 35 35 H 1.09004 * 111.03760 * 153.39733 * 7 6 4 36 36 H 1.09002 * 110.36932 * 204.15076 * 8 7 6 37 37 H 1.08997 * 110.36926 * 81.82448 * 8 7 6 38 38 H 1.09003 * 109.46711 * 60.00775 * 12 10 9 39 39 H 1.08998 * 109.47504 * 300.00228 * 12 10 9 40 40 H 1.08004 * 119.87292 * 0.02562 * 14 13 12 41 41 H 1.08006 * 119.74994 * 180.02562 * 15 14 13 42 42 H 1.08004 * 119.87392 * 179.74049 * 16 15 14 43 43 H 1.08004 * 120.13054 * 179.97438 * 17 16 15 44 44 H 0.96996 * 119.99869 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 3.9975 2.9983 -0.0529 6 6 4.3574 1.1945 -1.2040 7 6 5.6621 0.5962 -0.6148 8 6 5.2222 0.2533 0.8303 9 7 4.3133 1.3475 1.2178 10 6 4.0457 1.7366 2.4802 11 8 3.3505 2.7100 2.6802 12 6 4.6102 0.9619 3.6431 13 6 4.1648 1.5986 4.9343 14 6 4.9768 2.5089 5.5718 15 6 4.5698 3.0956 6.7598 16 6 3.3426 2.7742 7.3193 17 6 2.5145 1.8668 6.6994 18 6 2.9176 1.2643 5.4932 19 6 2.0748 0.3308 4.8470 20 1 2.1084 0.2263 3.7726 21 6 1.1973 -0.4578 5.5996 22 7 1.2869 -0.4727 6.9047 23 14 -0.1020 -1.4893 4.7408 24 1 0.5580 -2.4576 3.8287 25 1 -0.8973 -2.2277 5.7543 26 1 -0.9990 -0.6028 3.9567 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.8032 2.2371 0.8900 31 1 1.8031 2.2372 -0.8899 32 1 4.5826 1.8868 -2.0152 33 1 3.6913 0.4033 -1.5478 34 1 6.4647 1.3337 -0.6143 35 1 5.9600 -0.3019 -1.1560 36 1 6.0867 0.2254 1.4936 37 1 4.6966 -0.7014 0.8505 38 1 5.6989 0.9695 3.5904 39 1 4.2516 -0.0666 3.6029 40 1 5.9346 2.7670 5.1447 41 1 5.2132 3.8093 7.2530 42 1 3.0375 3.2343 8.2475 43 1 1.5592 1.6175 7.1372 44 1 0.6785 -1.0190 7.4264 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777410046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:02 Heat of formation + Delta-G solvation = -36.653646 kcal Electronic energy + Delta-G solvation = -25381.846756 eV Core-core repulsion = 22002.945912 eV Total energy + Delta-G solvation = -3378.900843 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.16794 -39.48701 -38.15952 -35.46747 -33.78025 -32.48594 -32.22022 -31.31233 -29.85840 -28.45448 -26.87067 -26.82533 -23.87560 -22.80321 -22.24926 -21.33247 -19.85100 -19.01256 -18.12808 -17.48830 -17.27230 -16.82383 -16.32897 -15.99544 -15.86151 -15.39192 -15.24575 -14.88839 -14.75340 -14.46515 -14.38020 -14.28388 -13.89983 -13.62829 -13.48692 -13.36430 -13.11986 -12.88806 -12.78580 -12.76994 -12.52489 -12.47251 -12.12550 -12.07731 -12.02285 -11.67082 -11.33199 -11.21261 -11.05599 -10.86199 -10.68357 -9.56186 -9.19517 -9.13577 -8.56648 -8.54415 -6.29965 0.71451 0.99025 1.13286 1.31588 1.42730 1.50449 1.62911 1.84026 2.19123 2.20236 2.80982 3.52372 3.64330 3.78712 3.93689 4.14038 4.16566 4.21316 4.24660 4.26329 4.38475 4.41904 4.42986 4.53542 4.59206 4.70183 4.75386 4.78426 4.79850 4.92747 5.02530 5.05636 5.07201 5.15696 5.22347 5.38064 5.42881 5.54918 5.55862 5.79006 6.04175 6.18814 6.20843 6.43675 6.64242 6.75870 7.01769 7.11569 7.40944 8.41192 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.006098 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.734485 B = 4590.202794 C = 6379.886573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.265 6.265 3 C -0.093 4.093 4 C 0.147 3.853 5 H 0.079 0.921 6 C -0.123 4.123 7 C -0.117 4.117 8 C 0.090 3.910 9 N -0.616 5.616 10 C 0.538 3.462 11 O -0.575 6.575 12 C -0.062 4.062 13 C -0.183 4.183 14 C -0.095 4.095 15 C -0.236 4.236 16 C -0.120 4.120 17 C -0.186 4.186 18 C 0.095 3.905 19 C -0.476 4.476 20 H 0.067 0.933 21 C 0.036 3.964 22 N -0.835 5.835 23 Si 0.964 3.036 24 H -0.254 1.254 25 H -0.267 1.267 26 H -0.268 1.268 27 H 0.110 0.890 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.324 -1.918 -17.780 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.041 6.041 3 C -0.242 4.242 4 C 0.043 3.957 5 H 0.097 0.903 6 C -0.161 4.161 7 C -0.155 4.155 8 C -0.032 4.032 9 N -0.351 5.351 10 C 0.328 3.672 11 O -0.454 6.454 12 C -0.101 4.101 13 C -0.184 4.184 14 C -0.113 4.113 15 C -0.255 4.255 16 C -0.138 4.138 17 C -0.206 4.206 18 C 0.093 3.907 19 C -0.506 4.506 20 H 0.085 0.915 21 C -0.177 4.177 22 N -0.462 5.462 23 Si 0.786 3.214 24 H -0.178 1.178 25 H -0.192 1.192 26 H -0.193 1.193 27 H 0.129 0.871 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.506 -2.363 -17.373 18.377 hybrid contribution -1.981 0.779 0.528 2.193 sum 3.525 -1.584 -16.845 17.282 Atomic orbital electron populations 1.23459 0.93761 1.07137 1.04975 1.86578 1.08254 1.11477 1.97745 1.23860 1.00942 0.94687 1.04756 1.21454 0.89464 0.98712 0.86109 0.90267 1.22825 0.97268 1.00799 0.95188 1.22747 0.96973 1.02769 0.93018 1.22584 0.92903 0.89703 0.97981 1.48615 1.46361 1.35930 1.04163 1.20673 0.79535 0.83763 0.83220 1.90629 1.40209 1.29334 1.85187 1.20203 1.01012 0.99325 0.89556 1.19597 0.95629 1.04574 0.98629 1.20724 0.98687 0.96315 0.95546 1.20732 0.98520 1.06799 0.99462 1.20966 0.95488 0.98285 0.99101 1.21347 1.00174 0.99628 0.99443 1.17736 0.90897 0.90356 0.91754 1.19536 1.18653 1.18031 0.94386 0.91478 1.26586 0.98424 0.97530 0.95194 1.69862 1.34397 1.34715 1.07263 0.85510 0.78261 0.78570 0.79067 1.17806 1.19161 1.19317 0.87140 0.92491 0.88334 0.92935 0.87264 0.87646 0.89067 0.89668 0.87395 0.89536 0.91538 0.87660 0.89287 0.86648 0.86538 0.87602 0.88396 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.08 10.76 113.37 1.22 -1.86 16 2 S -0.27 -7.51 20.22 -56.49 -1.14 -8.65 16 3 C -0.09 -2.64 5.65 71.98 0.41 -2.24 16 4 C 0.15 3.78 3.13 45.35 0.14 3.92 16 5 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 6 C -0.12 -2.02 6.25 31.79 0.20 -1.82 16 7 C -0.12 -1.70 7.09 31.98 0.23 -1.47 16 8 C 0.09 2.00 6.65 86.85 0.58 2.57 16 9 N -0.62 -18.83 2.68 -788.03 -2.12 -20.94 16 10 C 0.54 21.98 7.20 87.66 0.63 22.61 16 11 O -0.57 -28.86 15.24 -3.02 -0.05 -28.91 16 12 C -0.06 -2.53 4.28 29.10 0.12 -2.40 16 13 C -0.18 -9.14 4.43 -19.40 -0.09 -9.23 16 14 C -0.09 -4.40 9.66 22.22 0.21 -4.18 16 15 C -0.24 -11.00 10.05 22.46 0.23 -10.78 16 16 C -0.12 -6.07 10.02 22.22 0.22 -5.84 16 17 C -0.19 -10.61 8.66 22.73 0.20 -10.41 16 18 C 0.09 5.38 5.55 -21.29 -0.12 5.26 16 19 C -0.48 -26.73 8.06 23.46 0.19 -26.54 16 20 H 0.07 3.77 6.78 -2.91 -0.02 3.75 16 21 C 0.04 1.89 5.27 85.25 0.45 2.34 16 22 N -0.83 -45.86 10.84 21.83 0.24 -45.62 16 23 Si 0.96 40.80 29.57 68.60 2.03 42.83 16 24 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 25 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.05 1.97 6.97 -2.39 -0.02 1.95 16 31 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.59 6.31 -2.39 -0.02 1.57 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.71 7.51 -2.39 -0.02 1.69 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.11 3.51 7.68 -2.39 -0.02 3.49 16 39 H 0.09 3.79 7.12 -2.39 -0.02 3.77 16 40 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 41 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.10 5.84 6.24 -2.91 -0.02 5.82 16 44 H 0.28 14.23 8.30 -92.71 -0.77 13.46 16 Total: -1.00 -71.66 366.93 4.77 -66.89 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.98 Total: 34.49 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 4.82 Total: -40.08 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -1.88 Total: -66.56 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.05 Total: -28.91 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -1.14 Total: -8.65 kcal Total: -71.66 4.77 -66.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777410046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.236 kcal (2) G-P(sol) polarization free energy of solvation -71.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds