Wall clock time and date at job start Tue Mar 31 2020 12:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81407 * 103.00142 * 2 1 4 4 C 1.52995 * 112.84828 * 63.92842 * 3 2 1 5 5 N 1.46497 * 109.47351 * 47.81920 * 4 3 2 6 6 C 1.34769 * 120.00208 * 176.86242 * 5 4 3 7 7 O 1.21287 * 120.00097 * 359.97438 * 6 5 4 8 8 C 1.50708 * 120.00351 * 179.97438 * 6 5 4 9 9 C 1.50702 * 109.47121 * 179.97438 * 8 6 5 10 10 C 1.37631 * 120.12798 * 264.99998 * 9 8 6 11 11 C 1.38618 * 120.24740 * 180.30285 * 10 9 8 12 12 C 1.38650 * 120.49956 * 359.44440 * 11 10 9 13 13 C 1.37603 * 120.24877 * 0.55485 * 12 11 10 14 14 C 1.40692 * 120.12442 * 85.02829 * 9 8 6 15 15 C 1.41393 * 120.24906 * 359.94736 * 14 9 8 16 16 H 1.08004 * 119.99893 * 330.25529 * 15 14 9 17 17 C 1.39945 * 120.00325 * 150.24717 * 15 14 9 18 18 N 1.30822 * 120.00137 * 346.83907 * 17 15 14 19 19 Si 1.86800 * 120.00292 * 166.83997 * 17 15 14 20 20 H 1.48509 * 109.46995 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47347 * 120.00091 * 19 17 15 22 22 H 1.48503 * 109.47244 * 240.00481 * 19 17 15 23 23 C 1.53781 * 113.68796 * 195.19965 * 3 2 1 24 24 C 1.53784 * 87.08053 * 139.98995 * 23 3 2 25 25 C 1.53780 * 113.61220 * 292.73284 * 3 2 1 26 26 H 1.09006 * 109.46654 * 294.91682 * 1 2 3 27 27 H 1.08998 * 109.46963 * 54.91092 * 1 2 3 28 28 H 1.08994 * 109.47299 * 174.91284 * 1 2 3 29 29 H 1.08993 * 109.47322 * 287.80993 * 4 3 2 30 30 H 1.09011 * 109.46776 * 167.81378 * 4 3 2 31 31 H 0.97007 * 119.99906 * 356.85097 * 5 4 3 32 32 H 1.09000 * 109.46588 * 59.99671 * 8 6 5 33 33 H 1.08997 * 109.46734 * 299.99799 * 8 6 5 34 34 H 1.07998 * 119.88004 * 0.02562 * 10 9 8 35 35 H 1.08003 * 119.74773 * 179.70446 * 11 10 9 36 36 H 1.07994 * 119.87760 * 180.30714 * 12 11 10 37 37 H 1.08001 * 120.12778 * 179.75389 * 13 12 11 38 38 H 0.96999 * 120.00216 * 179.97438 * 18 17 15 39 39 H 1.09004 * 113.61398 * 254.53492 * 23 3 2 40 40 H 1.08999 * 113.61497 * 25.44006 * 23 3 2 41 41 H 1.08997 * 113.61340 * 220.02037 * 24 23 3 42 42 H 1.08998 * 113.61555 * 89.11174 * 24 23 3 43 43 H 1.09001 * 113.61558 * 334.48148 * 25 3 2 44 44 H 1.08995 * 113.61461 * 105.30060 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 1.7520 2.4858 1.2664 5 7 2.1513 1.7111 2.4440 6 6 1.8980 2.1850 3.6800 7 8 1.3400 3.2530 3.8174 8 6 2.3082 1.3878 4.8914 9 6 1.9139 2.1332 6.1404 10 6 2.8242 2.9468 6.7757 11 6 2.4661 3.6287 7.9282 12 6 1.1862 3.5090 8.4477 13 6 0.2597 2.7012 7.8291 14 6 0.6140 1.9996 6.6617 15 6 -0.3298 1.1670 6.0173 16 1 -0.2782 1.0186 4.9487 17 6 -1.3307 0.5352 6.7639 18 7 -1.2489 0.4992 8.0691 19 14 -2.7835 -0.2568 5.8971 20 1 -2.6412 -0.0790 4.4295 21 1 -2.8222 -1.7059 6.2192 22 1 -4.0423 0.3855 6.3532 23 6 3.6853 2.0638 -0.3692 24 6 3.1565 3.2592 -1.1794 25 6 1.8302 2.4902 -1.2996 26 1 -0.3633 0.4330 0.9321 27 1 -0.3633 0.5907 -0.8409 28 1 -0.3633 -1.0236 -0.0911 29 1 0.6667 2.5839 1.2469 30 1 2.2056 3.4760 1.3121 31 1 2.5978 0.8570 2.3341 32 1 3.3883 1.2417 4.8814 33 1 1.8103 0.4183 4.8739 34 1 3.8226 3.0509 6.3774 35 1 3.1883 4.2612 8.4229 36 1 0.9165 4.0487 9.3434 37 1 -0.7355 2.6063 8.2376 38 1 -1.9428 0.0616 8.5867 39 1 4.3009 2.3520 0.4829 40 1 4.1460 1.2899 -0.9831 41 1 3.6668 3.4010 -2.1320 42 1 3.0770 4.1787 -0.5996 43 1 1.7838 1.8329 -2.1678 44 1 0.9473 3.1214 -1.1990 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788771069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:40 Heat of formation + Delta-G solvation = -6.743157 kcal Electronic energy + Delta-G solvation = -24578.807772 eV Core-core repulsion = 21201.203944 eV Total energy + Delta-G solvation = -3377.603827 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.82082 -38.69064 -37.20654 -33.92762 -33.54021 -31.66266 -29.43341 -29.22544 -28.24219 -26.37092 -25.95528 -24.92960 -23.74771 -20.89177 -20.49228 -19.64094 -18.92355 -17.26485 -17.05648 -16.34659 -15.75824 -15.44418 -15.09276 -14.77967 -14.59575 -14.36829 -13.81505 -13.68345 -13.46238 -13.27364 -13.08493 -12.87495 -12.78228 -12.53762 -12.48843 -12.07182 -11.68669 -11.52388 -11.21802 -11.14036 -10.97725 -10.95099 -10.87903 -10.63116 -10.61141 -10.34891 -9.89687 -9.43340 -9.32096 -9.15509 -9.11192 -8.67123 -7.80637 -7.26662 -7.20402 -6.66518 -4.30277 1.53869 2.37163 2.81800 3.00815 3.09566 3.14113 3.28944 3.40319 3.64254 3.98005 4.15676 4.23269 4.40694 4.46781 4.72691 5.02445 5.07058 5.11461 5.34745 5.39585 5.49782 5.52063 5.60813 5.64804 5.66263 5.76678 5.79915 5.88774 6.03364 6.09245 6.21393 6.32799 6.49779 6.54664 6.81739 6.85880 7.15494 7.32697 7.45935 7.69678 7.94575 8.02999 8.13420 8.16382 8.36893 8.69829 8.92628 8.97511 9.06151 10.29018 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.004241 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.021088 B = 6600.009085 C = 8236.846913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.245 6.245 3 C -0.070 4.070 4 C 0.146 3.854 5 N -0.739 5.739 6 C 0.515 3.485 7 O -0.525 6.525 8 C -0.070 4.070 9 C -0.175 4.175 10 C -0.084 4.084 11 C -0.235 4.235 12 C -0.109 4.109 13 C -0.154 4.154 14 C 0.130 3.870 15 C -0.458 4.458 16 H 0.073 0.927 17 C 0.076 3.924 18 N -0.801 5.801 19 Si 0.903 3.097 20 H -0.263 1.263 21 H -0.275 1.275 22 H -0.273 1.273 23 C -0.106 4.106 24 C -0.136 4.136 25 C -0.122 4.122 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.402 0.598 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.278 0.722 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.605 -1.011 -17.055 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.015 6.015 3 C -0.180 4.180 4 C 0.020 3.980 5 N -0.396 5.396 6 C 0.303 3.697 7 O -0.400 6.400 8 C -0.110 4.110 9 C -0.177 4.177 10 C -0.102 4.102 11 C -0.255 4.255 12 C -0.128 4.128 13 C -0.173 4.173 14 C 0.127 3.873 15 C -0.488 4.488 16 H 0.092 0.908 17 C -0.140 4.140 18 N -0.428 5.428 19 Si 0.728 3.272 20 H -0.187 1.187 21 H -0.200 1.200 22 H -0.198 1.198 23 C -0.145 4.145 24 C -0.175 4.175 25 C -0.162 4.162 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.239 0.761 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.720 -1.257 -16.724 17.720 hybrid contribution -1.469 0.155 -0.286 1.505 sum 4.251 -1.102 -17.009 17.567 Atomic orbital electron populations 1.23369 0.93866 1.06315 1.05430 1.86600 1.08045 1.09556 1.97281 1.24584 1.01618 0.93664 0.98168 1.20989 0.99734 0.94661 0.82651 1.46253 1.63666 1.24711 1.04943 1.21233 0.78043 0.86594 0.83847 1.90675 1.40484 1.22592 1.86217 1.20257 1.00460 0.99607 0.90690 1.19116 0.94811 1.05388 0.98358 1.20309 0.96980 0.97158 0.95771 1.20319 0.97006 1.07739 1.00411 1.20677 0.94252 0.99301 0.98550 1.21256 0.99036 0.98294 0.98740 1.17339 0.89925 0.89131 0.90861 1.19469 1.09712 1.24533 0.95134 0.90848 1.25840 0.98311 0.95197 0.94657 1.69811 1.32013 1.34621 1.06314 0.86355 0.81270 0.78890 0.80724 1.18700 1.20040 1.19839 1.22815 0.92809 0.98236 1.00642 1.22839 0.96498 0.97391 1.00774 1.23191 0.98671 0.98792 0.95503 0.89993 0.90529 0.88220 0.91814 0.90633 0.76143 0.90652 0.88477 0.89746 0.89651 0.89581 0.86785 0.91147 0.90166 0.88958 0.90631 0.89531 0.88662 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.61 101.05 1.07 -0.17 16 2 S -0.24 -2.68 20.39 -107.50 -2.19 -4.87 16 3 C -0.07 -0.71 0.93 -89.81 -0.08 -0.79 16 4 C 0.15 1.94 4.92 -4.05 -0.02 1.92 16 5 N -0.74 -11.18 5.30 -60.29 -0.32 -11.50 16 6 C 0.52 10.20 7.44 -10.98 -0.08 10.12 16 7 O -0.53 -12.68 16.03 5.55 0.09 -12.59 16 8 C -0.07 -1.41 5.19 -29.03 -0.15 -1.57 16 9 C -0.17 -4.28 4.43 -103.92 -0.46 -4.74 16 10 C -0.08 -1.97 9.66 -39.66 -0.38 -2.35 16 11 C -0.24 -5.56 10.05 -39.29 -0.39 -5.95 16 12 C -0.11 -2.70 10.02 -39.66 -0.40 -3.10 16 13 C -0.15 -4.17 8.65 -38.87 -0.34 -4.51 16 14 C 0.13 3.52 5.53 -106.83 -0.59 2.93 16 15 C -0.46 -12.24 8.05 -37.74 -0.30 -12.54 16 16 H 0.07 1.93 6.80 -52.48 -0.36 1.57 16 17 C 0.08 1.95 5.20 -17.34 -0.09 1.85 16 18 N -0.80 -21.03 11.05 55.55 0.61 -20.42 16 19 Si 0.90 19.14 29.58 -169.99 -5.03 14.12 16 20 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 23 C -0.11 -0.92 7.23 -25.92 -0.19 -1.11 16 24 C -0.14 -1.03 7.73 -25.92 -0.20 -1.23 16 25 C -0.12 -1.00 7.23 -25.92 -0.19 -1.18 16 26 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 27 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 1.03 7.35 -51.92 -0.38 0.65 16 31 H 0.40 5.38 7.40 -40.82 -0.30 5.08 16 32 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 33 H 0.10 1.94 7.13 -51.93 -0.37 1.57 16 34 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.11 3.18 6.40 -52.49 -0.34 2.84 16 38 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 39 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.68 7.66 -51.93 -0.40 0.28 16 43 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 44 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -30.73 372.92 -10.77 -41.51 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.76 Total: 10.57 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -2.80 Total: -22.43 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.29 Total: -31.92 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.59 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.12 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.19 Total: -4.87 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.73 -10.77 -41.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788771069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.766 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds