Wall clock time and date at job start Tue Mar 31 2020 12:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81407 * 103.00142 * 2 1 4 4 C 1.52995 * 112.84828 * 63.92842 * 3 2 1 5 5 N 1.46497 * 109.47351 * 47.81920 * 4 3 2 6 6 C 1.34769 * 120.00208 * 176.86242 * 5 4 3 7 7 O 1.21287 * 120.00097 * 359.97438 * 6 5 4 8 8 C 1.50708 * 120.00351 * 179.97438 * 6 5 4 9 9 C 1.50702 * 109.47121 * 179.97438 * 8 6 5 10 10 C 1.37631 * 120.12798 * 264.99998 * 9 8 6 11 11 C 1.38618 * 120.24740 * 180.30285 * 10 9 8 12 12 C 1.38650 * 120.49956 * 359.44440 * 11 10 9 13 13 C 1.37603 * 120.24877 * 0.55485 * 12 11 10 14 14 C 1.40692 * 120.12442 * 85.02829 * 9 8 6 15 15 C 1.41393 * 120.24906 * 359.94736 * 14 9 8 16 16 H 1.08004 * 119.99893 * 330.25529 * 15 14 9 17 17 C 1.39945 * 120.00325 * 150.24717 * 15 14 9 18 18 N 1.30822 * 120.00137 * 346.83907 * 17 15 14 19 19 Si 1.86800 * 120.00292 * 166.83997 * 17 15 14 20 20 H 1.48509 * 109.46995 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47347 * 120.00091 * 19 17 15 22 22 H 1.48503 * 109.47244 * 240.00481 * 19 17 15 23 23 C 1.53781 * 113.68796 * 195.19965 * 3 2 1 24 24 C 1.53784 * 87.08053 * 139.98995 * 23 3 2 25 25 C 1.53780 * 113.61220 * 292.73284 * 3 2 1 26 26 H 1.09006 * 109.46654 * 294.91682 * 1 2 3 27 27 H 1.08998 * 109.46963 * 54.91092 * 1 2 3 28 28 H 1.08994 * 109.47299 * 174.91284 * 1 2 3 29 29 H 1.08993 * 109.47322 * 287.80993 * 4 3 2 30 30 H 1.09011 * 109.46776 * 167.81378 * 4 3 2 31 31 H 0.97007 * 119.99906 * 356.85097 * 5 4 3 32 32 H 1.09000 * 109.46588 * 59.99671 * 8 6 5 33 33 H 1.08997 * 109.46734 * 299.99799 * 8 6 5 34 34 H 1.07998 * 119.88004 * 0.02562 * 10 9 8 35 35 H 1.08003 * 119.74773 * 179.70446 * 11 10 9 36 36 H 1.07994 * 119.87760 * 180.30714 * 12 11 10 37 37 H 1.08001 * 120.12778 * 179.75389 * 13 12 11 38 38 H 0.96999 * 120.00216 * 179.97438 * 18 17 15 39 39 H 1.09004 * 113.61398 * 254.53492 * 23 3 2 40 40 H 1.08999 * 113.61497 * 25.44006 * 23 3 2 41 41 H 1.08997 * 113.61340 * 220.02037 * 24 23 3 42 42 H 1.08998 * 113.61555 * 89.11174 * 24 23 3 43 43 H 1.09001 * 113.61558 * 334.48148 * 25 3 2 44 44 H 1.08995 * 113.61461 * 105.30060 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 1.7520 2.4858 1.2664 5 7 2.1513 1.7111 2.4440 6 6 1.8980 2.1850 3.6800 7 8 1.3400 3.2530 3.8174 8 6 2.3082 1.3878 4.8914 9 6 1.9139 2.1332 6.1404 10 6 2.8242 2.9468 6.7757 11 6 2.4661 3.6287 7.9282 12 6 1.1862 3.5090 8.4477 13 6 0.2597 2.7012 7.8291 14 6 0.6140 1.9996 6.6617 15 6 -0.3298 1.1670 6.0173 16 1 -0.2782 1.0186 4.9487 17 6 -1.3307 0.5352 6.7639 18 7 -1.2489 0.4992 8.0691 19 14 -2.7835 -0.2568 5.8971 20 1 -2.6412 -0.0790 4.4295 21 1 -2.8222 -1.7059 6.2192 22 1 -4.0423 0.3855 6.3532 23 6 3.6853 2.0638 -0.3692 24 6 3.1565 3.2592 -1.1794 25 6 1.8302 2.4902 -1.2996 26 1 -0.3633 0.4330 0.9321 27 1 -0.3633 0.5907 -0.8409 28 1 -0.3633 -1.0236 -0.0911 29 1 0.6667 2.5839 1.2469 30 1 2.2056 3.4760 1.3121 31 1 2.5978 0.8570 2.3341 32 1 3.3883 1.2417 4.8814 33 1 1.8103 0.4183 4.8739 34 1 3.8226 3.0509 6.3774 35 1 3.1883 4.2612 8.4229 36 1 0.9165 4.0487 9.3434 37 1 -0.7355 2.6063 8.2376 38 1 -1.9428 0.0616 8.5867 39 1 4.3009 2.3520 0.4829 40 1 4.1460 1.2899 -0.9831 41 1 3.6668 3.4010 -2.1320 42 1 3.0770 4.1787 -0.5996 43 1 1.7838 1.8329 -2.1678 44 1 0.9473 3.1214 -1.1990 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788771069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:40 Heat of formation + Delta-G solvation = -22.902309 kcal Electronic energy + Delta-G solvation = -24579.508485 eV Core-core repulsion = 21201.203944 eV Total energy + Delta-G solvation = -3378.304541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.01694 -39.95948 -38.96816 -35.47109 -35.29812 -33.43202 -31.35564 -30.18476 -29.46802 -27.88541 -26.77584 -26.61258 -24.71129 -22.82137 -22.13936 -21.07992 -19.97650 -19.05341 -18.15679 -17.72601 -17.31755 -16.79507 -16.42593 -16.21602 -15.89288 -15.55287 -15.39330 -15.15143 -14.59800 -14.44744 -14.39742 -14.32600 -13.96173 -13.70687 -13.50358 -13.37674 -13.22762 -13.03317 -12.90883 -12.77537 -12.60901 -12.48087 -12.12078 -11.93349 -11.57631 -11.36899 -11.31881 -11.21157 -11.05691 -10.84034 -10.65223 -10.04144 -9.20098 -9.14216 -8.69160 -8.57270 -6.30493 0.70489 0.99042 1.12891 1.34075 1.47300 1.49979 1.53422 1.83076 2.19764 2.34252 2.80143 3.36679 3.43466 3.55749 3.76237 3.81324 4.15189 4.25344 4.28401 4.35308 4.38311 4.43135 4.45483 4.61805 4.64928 4.71402 4.77261 4.78709 4.81199 4.86117 4.97808 5.03595 5.07278 5.08487 5.21116 5.35525 5.40059 5.51240 5.54347 5.78522 6.03721 6.16874 6.20429 6.43076 6.64760 6.75184 7.00410 7.11057 7.42627 8.40476 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012978 B = 0.004241 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.021088 B = 6600.009085 C = 8236.846913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.259 6.259 3 C -0.070 4.070 4 C 0.147 3.853 5 N -0.719 5.719 6 C 0.519 3.481 7 O -0.576 6.576 8 C -0.070 4.070 9 C -0.183 4.183 10 C -0.094 4.094 11 C -0.237 4.237 12 C -0.119 4.119 13 C -0.187 4.187 14 C 0.097 3.903 15 C -0.484 4.484 16 H 0.067 0.933 17 C 0.036 3.964 18 N -0.832 5.832 19 Si 0.971 3.029 20 H -0.263 1.263 21 H -0.261 1.261 22 H -0.269 1.269 23 C -0.102 4.102 24 C -0.129 4.129 25 C -0.115 4.115 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.413 0.587 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.284 0.716 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.108 0.892 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.844 -1.488 -19.101 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.029 6.029 3 C -0.180 4.180 4 C 0.020 3.980 5 N -0.374 5.374 6 C 0.307 3.693 7 O -0.454 6.454 8 C -0.109 4.109 9 C -0.184 4.184 10 C -0.112 4.112 11 C -0.256 4.256 12 C -0.137 4.137 13 C -0.207 4.207 14 C 0.095 3.905 15 C -0.514 4.514 16 H 0.085 0.915 17 C -0.178 4.178 18 N -0.460 5.460 19 Si 0.793 3.207 20 H -0.187 1.187 21 H -0.185 1.185 22 H -0.194 1.194 23 C -0.141 4.141 24 C -0.168 4.168 25 C -0.155 4.155 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.251 0.749 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.126 0.874 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.991 -1.766 -18.796 20.132 hybrid contribution -1.757 0.343 0.362 1.827 sum 5.234 -1.423 -18.434 19.215 Atomic orbital electron populations 1.23382 0.93387 1.07127 1.04858 1.86644 1.08671 1.10384 1.97210 1.24599 1.03131 0.92822 0.97423 1.21050 0.98826 0.94838 0.83238 1.46051 1.62181 1.24889 1.04299 1.21091 0.77476 0.85785 0.84999 1.90656 1.42997 1.24751 1.87013 1.20268 1.02605 0.98733 0.89318 1.19584 0.94079 1.05224 0.99553 1.20751 0.98337 0.96442 0.95637 1.20743 0.96962 1.07481 1.00374 1.20959 0.94608 0.98967 0.99209 1.21259 0.98954 1.00362 1.00104 1.17723 0.91479 0.89832 0.91490 1.19578 1.11233 1.25701 0.94905 0.91482 1.26620 1.00478 0.95445 0.95234 1.69873 1.33057 1.35424 1.07599 0.85328 0.77596 0.78499 0.79313 1.18706 1.18544 1.19420 1.22853 0.91508 0.98994 1.00764 1.22820 0.95925 0.96623 1.01435 1.23211 0.99097 0.98675 0.94495 0.92270 0.88954 0.87199 0.93446 0.90872 0.74873 0.87071 0.88759 0.86468 0.86499 0.87572 0.88853 0.90508 0.90723 0.87879 0.88651 0.89999 0.87374 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 10.61 113.37 1.20 -1.11 16 2 S -0.26 -5.26 20.39 -56.49 -1.15 -6.41 16 3 C -0.07 -1.29 0.93 -10.27 -0.01 -1.30 16 4 C 0.15 3.81 4.92 86.38 0.43 4.23 16 5 N -0.72 -21.27 5.30 -463.06 -2.46 -23.72 16 6 C 0.52 20.47 7.44 87.66 0.65 21.13 16 7 O -0.58 -28.30 16.03 -3.05 -0.05 -28.35 16 8 C -0.07 -2.76 5.19 29.10 0.15 -2.61 16 9 C -0.18 -8.96 4.43 -19.41 -0.09 -9.05 16 10 C -0.09 -4.27 9.66 22.22 0.21 -4.05 16 11 C -0.24 -10.86 10.05 22.46 0.23 -10.64 16 12 C -0.12 -5.94 10.02 22.22 0.22 -5.72 16 13 C -0.19 -10.53 8.65 22.73 0.20 -10.33 16 14 C 0.10 5.41 5.53 -21.29 -0.12 5.29 16 15 C -0.48 -26.72 8.05 23.46 0.19 -26.53 16 16 H 0.07 3.65 6.80 -2.91 -0.02 3.63 16 17 C 0.04 1.86 5.20 85.26 0.44 2.31 16 18 N -0.83 -45.05 11.05 21.83 0.24 -44.81 16 19 Si 0.97 39.94 29.58 68.60 2.03 41.97 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 C -0.10 -1.53 7.23 31.12 0.23 -1.31 16 24 C -0.13 -1.62 7.73 31.12 0.24 -1.38 16 25 C -0.12 -1.62 7.23 31.12 0.23 -1.40 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 28 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.97 7.35 -2.38 -0.02 1.95 16 31 H 0.41 10.51 7.40 -92.70 -0.69 9.82 16 32 H 0.11 3.52 8.05 -2.39 -0.02 3.50 16 33 H 0.09 3.78 7.13 -2.39 -0.02 3.77 16 34 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 35 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.09 5.49 6.40 -2.91 -0.02 5.48 16 38 H 0.28 13.97 8.30 -92.71 -0.77 13.20 16 39 H 0.07 1.22 8.10 -2.38 -0.02 1.20 16 40 H 0.10 1.37 8.10 -2.39 -0.02 1.35 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.08 1.13 7.66 -2.39 -0.02 1.11 16 43 H 0.11 1.30 8.10 -2.39 -0.02 1.28 16 44 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 Total: -1.00 -68.60 372.92 3.32 -65.28 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: 0.31 Total: 38.51 kcal Atomic # 6 Polarization: -46.87 SS G_CDS: 4.40 Total: -42.47 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -2.21 Total: -68.53 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.05 Total: -28.35 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Atomic # 16 Polarization: -5.26 SS G_CDS: -1.15 Total: -6.41 kcal Total: -68.60 3.32 -65.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788771069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.376 kcal (2) G-P(sol) polarization free energy of solvation -68.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds