Wall clock time and date at job start Tue Mar 31 2020 12:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 120.00113 * 2 1 4 4 N 1.46493 * 109.47228 * 124.99578 * 3 2 1 5 5 C 1.46496 * 120.00297 * 270.00263 * 4 3 2 6 6 C 1.50709 * 109.47001 * 270.00103 * 5 4 3 7 7 H 1.08001 * 119.99331 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00246 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00062 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00393 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46949 * 59.99466 * 10 8 6 12 12 H 1.48496 * 109.47644 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47133 * 299.99954 * 10 8 6 14 14 C 1.34784 * 119.99962 * 89.99978 * 4 3 2 15 15 O 1.21281 * 120.00093 * 179.97438 * 14 4 3 16 16 C 1.50696 * 119.99865 * 0.02562 * 14 4 3 17 17 C 1.53000 * 109.47110 * 179.97438 * 16 14 4 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 14 19 19 C 1.38296 * 119.92013 * 269.72531 * 18 17 16 20 20 C 1.38084 * 120.07929 * 179.76612 * 19 18 17 21 21 C 1.38980 * 119.91829 * 0.51036 * 20 19 18 22 22 S 1.76198 * 120.08140 * 179.72218 * 21 20 19 23 23 C 1.81399 * 102.99802 * 0.02562 * 22 21 20 24 24 C 1.38977 * 119.83977 * 359.74496 * 21 20 19 25 25 C 1.38090 * 119.91589 * 359.97438 * 24 21 20 26 26 H 1.08005 * 119.99918 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99890 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99890 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47028 * 4.99616 * 3 2 1 30 30 H 1.08999 * 109.46933 * 245.00056 * 3 2 1 31 31 H 1.09000 * 109.47287 * 29.99656 * 5 4 3 32 32 H 1.09002 * 109.47320 * 150.00258 * 5 4 3 33 33 H 0.96994 * 120.00434 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47543 * 59.99570 * 16 14 4 35 35 H 1.09008 * 109.47338 * 300.00084 * 16 14 4 36 36 H 1.09000 * 109.46884 * 60.00335 * 17 16 14 37 37 H 1.09000 * 109.46955 * 299.99651 * 17 16 14 38 38 H 1.07998 * 119.96112 * 0.02562 * 19 18 17 39 39 H 1.07998 * 120.04093 * 180.25521 * 20 19 18 40 40 H 1.09002 * 109.47362 * 60.00424 * 23 22 21 41 41 H 1.09003 * 109.46793 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47492 * 300.00021 * 23 22 21 43 43 H 1.07998 * 120.04219 * 179.97438 * 24 21 20 44 44 H 1.08001 * 119.95755 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3039 3.8369 1.6366 8 6 2.5193 4.0667 3.6084 9 7 1.9599 3.4660 4.6360 10 14 2.8736 5.8994 3.6775 11 1 2.1379 6.5873 2.5863 12 1 2.4327 6.4399 4.9885 13 1 4.3316 6.1283 3.5123 14 6 4.2497 0.8662 0.9825 15 8 5.0199 0.8888 1.9190 16 6 4.6973 0.3183 -0.3481 17 6 6.1537 -0.1393 -0.2474 18 6 6.6011 -0.6878 -1.5779 19 6 6.4449 -2.0332 -1.8572 20 6 6.8493 -2.5383 -3.0770 21 6 7.4235 -1.6949 -4.0206 22 16 7.9477 -2.3362 -5.5757 23 6 7.5290 -4.0970 -5.4530 24 6 7.5838 -0.3444 -3.7344 25 6 7.1717 0.1547 -2.5145 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4026 -0.9314 31 1 1.4887 1.6967 2.5459 32 1 3.0989 1.3604 3.2259 33 1 1.7309 3.9746 5.4295 34 1 4.6126 1.0952 -1.1080 35 1 4.0681 -0.5284 -0.6227 36 1 6.2387 -0.9162 0.5125 37 1 6.7826 0.7077 0.0269 38 1 6.0023 -2.6888 -1.1219 39 1 6.7232 -3.5883 -3.2960 40 1 6.4558 -4.2051 -5.2955 41 1 7.8133 -4.6032 -6.3755 42 1 8.0658 -4.5406 -4.6144 43 1 8.0300 0.3139 -4.4650 44 1 7.2963 1.2040 -2.2913 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820231771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:12 Heat of formation + Delta-G solvation = -1.595704 kcal Electronic energy + Delta-G solvation = -23486.566227 eV Core-core repulsion = 20109.185610 eV Total energy + Delta-G solvation = -3377.380617 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.63975 -38.88247 -35.71193 -34.04827 -33.13200 -32.05047 -31.40097 -30.07520 -29.13628 -27.55840 -25.56035 -24.67556 -22.81330 -22.50369 -21.04449 -19.92241 -18.30615 -17.96309 -16.64045 -16.42581 -15.80640 -15.65562 -15.49982 -14.91079 -14.76995 -14.45817 -14.27636 -14.15848 -14.02952 -13.51087 -13.44264 -13.15527 -12.81108 -12.61134 -12.45635 -12.07645 -11.88978 -11.64775 -11.50783 -11.33671 -11.20353 -11.05358 -10.89989 -10.74399 -10.57492 -10.50745 -10.18280 -9.73295 -9.64954 -9.18622 -9.16039 -8.87769 -8.42345 -7.67780 -7.61406 -6.03364 -4.08212 1.00891 1.19784 1.22896 2.09660 2.44911 3.32012 3.36506 3.37911 3.45602 3.48768 4.03445 4.45153 4.60719 4.65454 4.65975 4.72779 4.77417 5.12801 5.16155 5.22064 5.24345 5.25796 5.30410 5.37464 5.39946 5.43198 5.57565 5.64659 5.78901 5.84805 6.00509 6.03013 6.07053 6.17571 6.20529 6.29623 6.56448 6.74725 6.78847 6.91231 7.10063 7.45967 7.56171 7.92994 8.24525 8.42617 8.90820 9.10291 9.56770 11.04703 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.018738 B = 0.002511 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.931510 B =11149.744719 C =11906.027556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.167 4.167 3 C 0.136 3.864 4 N -0.594 5.594 5 C 0.247 3.753 6 C -0.526 4.526 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.504 3.496 15 O -0.541 6.541 16 C -0.134 4.134 17 C -0.067 4.067 18 C -0.074 4.074 19 C -0.098 4.098 20 C -0.131 4.131 21 C -0.093 4.093 22 S -0.128 6.128 23 C -0.143 4.143 24 C -0.097 4.097 25 C -0.098 4.098 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.480 -13.744 -20.033 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.186 4.186 3 C 0.012 3.988 4 N -0.325 5.325 5 C 0.128 3.872 6 C -0.565 4.565 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.291 3.709 15 O -0.419 6.419 16 C -0.174 4.174 17 C -0.104 4.104 18 C -0.077 4.077 19 C -0.118 4.118 20 C -0.154 4.154 21 C -0.205 4.205 22 S 0.113 5.887 23 C -0.311 4.311 24 C -0.120 4.120 25 C -0.117 4.117 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.144 0.856 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.339 -13.220 -20.344 25.348 hybrid contribution -0.607 0.307 1.127 1.316 sum 6.732 -12.913 -19.218 24.111 Atomic orbital electron populations 1.23814 0.95864 1.01738 1.00717 1.23426 0.96381 0.99052 0.99782 1.20577 0.93139 0.95249 0.89820 1.48236 1.10591 1.60191 1.13525 1.19259 0.95341 0.93725 0.78875 1.21395 1.40531 0.93363 1.01206 0.92546 1.24934 0.95089 0.98738 0.95352 1.69924 1.42023 1.36251 1.05179 0.86568 0.78831 0.84933 0.77141 1.20267 1.21192 1.20173 1.20367 0.82294 0.78573 0.89680 1.90671 1.52545 1.56520 1.42184 1.21696 0.96814 1.01884 0.96993 1.20374 0.95291 1.02051 0.92720 1.20084 0.97728 0.93491 0.96370 1.20994 0.99320 0.95147 0.96293 1.21113 1.01106 0.99020 0.94192 1.21649 1.04239 0.97188 0.97447 1.85445 1.78282 1.07030 1.17939 1.23651 1.05406 0.95280 1.06794 1.20737 1.00780 0.93072 0.97404 1.21077 0.97905 1.00020 0.92736 0.88829 0.88286 0.87855 0.89535 0.90733 0.95067 0.93941 0.92682 0.89415 0.89623 0.90145 0.89919 0.85579 0.86059 0.89722 0.87515 0.89755 0.85597 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 14.32 29.02 0.42 -1.96 16 2 C -0.17 -2.35 9.74 -36.02 -0.35 -2.70 16 3 C 0.14 2.19 5.65 -5.20 -0.03 2.16 16 4 N -0.59 -12.42 2.44 -176.43 -0.43 -12.85 16 5 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 6 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 7 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 10 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.50 10.19 7.67 -10.98 -0.08 10.10 16 15 O -0.54 -13.35 15.56 5.56 0.09 -13.26 16 16 C -0.13 -1.90 4.23 -27.89 -0.12 -2.02 16 17 C -0.07 -0.89 4.63 -27.88 -0.13 -1.02 16 18 C -0.07 -0.86 5.14 -104.57 -0.54 -1.40 16 19 C -0.10 -1.03 9.69 -39.62 -0.38 -1.41 16 20 C -0.13 -1.29 9.36 -39.36 -0.37 -1.66 16 21 C -0.09 -0.97 6.11 -39.03 -0.24 -1.21 16 22 S -0.13 -1.14 22.56 -107.50 -2.43 -3.57 16 23 C -0.14 -0.81 9.15 101.05 0.92 0.11 16 24 C -0.10 -1.02 9.79 -39.36 -0.39 -1.40 16 25 C -0.10 -1.07 9.69 -39.61 -0.38 -1.45 16 26 H 0.09 1.04 8.06 -52.48 -0.42 0.62 16 27 H 0.10 1.27 7.84 -52.49 -0.41 0.85 16 28 H 0.10 1.36 7.83 -52.49 -0.41 0.95 16 29 H 0.09 1.46 7.72 -51.93 -0.40 1.06 16 30 H 0.07 1.00 6.44 -51.93 -0.33 0.67 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.09 1.13 7.40 -51.93 -0.38 0.75 16 35 H 0.09 1.06 7.78 -51.92 -0.40 0.65 16 36 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 37 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.12 0.94 5.88 -52.49 -0.31 0.63 16 40 H 0.08 0.44 7.75 -51.92 -0.40 0.04 16 41 H 0.11 0.44 8.14 -51.92 -0.42 0.01 16 42 H 0.08 0.44 7.75 -51.92 -0.40 0.03 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -33.17 384.36 -10.14 -43.31 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.76 Total: 0.64 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.12 Total: -10.98 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.31 Total: -38.80 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.43 Total: -3.57 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.17 -10.14 -43.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820231771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.715 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds