Wall clock time and date at job start Tue Mar 31 2020 12:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50705 * 120.00113 * 2 1 4 4 N 1.46493 * 109.47228 * 124.99578 * 3 2 1 5 5 C 1.46496 * 120.00297 * 270.00263 * 4 3 2 6 6 C 1.50709 * 109.47001 * 270.00103 * 5 4 3 7 7 H 1.08001 * 119.99331 * 359.97438 * 6 5 4 8 8 C 1.37869 * 120.00246 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00062 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00393 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46949 * 59.99466 * 10 8 6 12 12 H 1.48496 * 109.47644 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47133 * 299.99954 * 10 8 6 14 14 C 1.34784 * 119.99962 * 89.99978 * 4 3 2 15 15 O 1.21281 * 120.00093 * 179.97438 * 14 4 3 16 16 C 1.50696 * 119.99865 * 0.02562 * 14 4 3 17 17 C 1.53000 * 109.47110 * 179.97438 * 16 14 4 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 14 19 19 C 1.38296 * 119.92013 * 269.72531 * 18 17 16 20 20 C 1.38084 * 120.07929 * 179.76612 * 19 18 17 21 21 C 1.38980 * 119.91829 * 0.51036 * 20 19 18 22 22 S 1.76198 * 120.08140 * 179.72218 * 21 20 19 23 23 C 1.81399 * 102.99802 * 0.02562 * 22 21 20 24 24 C 1.38977 * 119.83977 * 359.74496 * 21 20 19 25 25 C 1.38090 * 119.91589 * 359.97438 * 24 21 20 26 26 H 1.08005 * 119.99918 * 179.97438 * 1 2 3 27 27 H 1.08001 * 119.99890 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99890 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47028 * 4.99616 * 3 2 1 30 30 H 1.08999 * 109.46933 * 245.00056 * 3 2 1 31 31 H 1.09000 * 109.47287 * 29.99656 * 5 4 3 32 32 H 1.09002 * 109.47320 * 150.00258 * 5 4 3 33 33 H 0.96994 * 120.00434 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47543 * 59.99570 * 16 14 4 35 35 H 1.09008 * 109.47338 * 300.00084 * 16 14 4 36 36 H 1.09000 * 109.46884 * 60.00335 * 17 16 14 37 37 H 1.09000 * 109.46955 * 299.99651 * 17 16 14 38 38 H 1.07998 * 119.96112 * 0.02562 * 19 18 17 39 39 H 1.07998 * 120.04093 * 180.25521 * 20 19 18 40 40 H 1.09002 * 109.47362 * 60.00424 * 23 22 21 41 41 H 1.09003 * 109.46793 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47492 * 300.00021 * 23 22 21 43 43 H 1.07998 * 120.04219 * 179.97438 * 24 21 20 44 44 H 1.08001 * 119.95755 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3039 3.8369 1.6366 8 6 2.5193 4.0667 3.6084 9 7 1.9599 3.4660 4.6360 10 14 2.8736 5.8994 3.6775 11 1 2.1379 6.5873 2.5863 12 1 2.4327 6.4399 4.9885 13 1 4.3316 6.1283 3.5123 14 6 4.2497 0.8662 0.9825 15 8 5.0199 0.8888 1.9190 16 6 4.6973 0.3183 -0.3481 17 6 6.1537 -0.1393 -0.2474 18 6 6.6011 -0.6878 -1.5779 19 6 6.4449 -2.0332 -1.8572 20 6 6.8493 -2.5383 -3.0770 21 6 7.4235 -1.6949 -4.0206 22 16 7.9477 -2.3362 -5.5757 23 6 7.5290 -4.0970 -5.4530 24 6 7.5838 -0.3444 -3.7344 25 6 7.1717 0.1547 -2.5145 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0895 30 1 2.6213 1.4026 -0.9314 31 1 1.4887 1.6967 2.5459 32 1 3.0989 1.3604 3.2259 33 1 1.7309 3.9746 5.4295 34 1 4.6126 1.0952 -1.1080 35 1 4.0681 -0.5284 -0.6227 36 1 6.2387 -0.9162 0.5125 37 1 6.7826 0.7077 0.0269 38 1 6.0023 -2.6888 -1.1219 39 1 6.7232 -3.5883 -3.2960 40 1 6.4558 -4.2051 -5.2955 41 1 7.8133 -4.6032 -6.3755 42 1 8.0658 -4.5406 -4.6144 43 1 8.0300 0.3139 -4.4650 44 1 7.2963 1.2040 -2.2913 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820231771.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:12 Heat of formation + Delta-G solvation = -18.674860 kcal Electronic energy + Delta-G solvation = -23487.306834 eV Core-core repulsion = 20109.185610 eV Total energy + Delta-G solvation = -3378.121225 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90531 -40.04109 -37.24578 -35.32552 -34.83058 -33.65078 -32.14319 -31.18513 -29.75455 -29.26043 -26.91403 -26.14239 -24.19757 -23.57603 -22.06147 -21.09168 -19.82552 -18.70467 -18.62329 -17.91555 -17.24415 -16.82447 -16.50260 -16.23128 -16.09364 -15.58430 -15.55147 -14.87071 -14.72090 -14.61631 -14.46304 -14.24413 -14.10753 -13.84076 -13.72680 -13.40239 -13.22735 -12.97143 -12.90839 -12.82769 -12.55506 -12.42013 -12.22144 -12.21317 -12.10795 -11.79547 -11.68706 -11.16824 -10.68530 -10.64378 -10.40912 -10.30115 -9.93520 -9.45068 -8.32418 -8.22041 -6.36957 0.19768 0.42168 0.60936 1.33889 1.36576 1.40533 1.47870 1.50347 1.85952 2.34626 2.49993 2.73609 3.07340 3.62187 3.83354 4.00428 4.02761 4.09270 4.16402 4.22933 4.27854 4.29435 4.31208 4.43582 4.47262 4.55355 4.65710 4.78579 4.85567 4.86951 4.92714 5.03297 5.07381 5.12770 5.21600 5.23777 5.29259 5.36455 5.53050 5.70218 5.71858 5.77226 5.94793 5.97364 6.06984 6.70024 6.80174 7.28696 7.49897 8.84914 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.018738 B = 0.002511 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.931510 B =11149.744719 C =11906.027556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.182 4.182 3 C 0.133 3.867 4 N -0.600 5.600 5 C 0.264 3.736 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.007 3.993 9 N -0.929 5.929 10 Si 0.967 3.033 11 H -0.260 1.260 12 H -0.279 1.279 13 H -0.277 1.277 14 C 0.495 3.505 15 O -0.597 6.597 16 C -0.116 4.116 17 C -0.058 4.058 18 C -0.085 4.085 19 C -0.100 4.100 20 C -0.132 4.132 21 C -0.098 4.098 22 S -0.153 6.153 23 C -0.136 4.136 24 C -0.107 4.107 25 C -0.103 4.103 26 H 0.116 0.884 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.019 0.981 32 H -0.005 1.005 33 H 0.267 0.733 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.135 0.865 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 -14.482 -22.575 27.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.202 4.202 3 C 0.011 3.989 4 N -0.330 5.330 5 C 0.143 3.857 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.568 5.568 10 Si 0.791 3.209 11 H -0.184 1.184 12 H -0.204 1.204 13 H -0.203 1.203 14 C 0.285 3.715 15 O -0.478 6.478 16 C -0.155 4.155 17 C -0.096 4.096 18 C -0.087 4.087 19 C -0.120 4.120 20 C -0.156 4.156 21 C -0.211 4.211 22 S 0.089 5.911 23 C -0.304 4.304 24 C -0.130 4.130 25 C -0.123 4.123 26 H 0.135 0.865 27 H 0.115 0.885 28 H 0.134 0.866 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.037 0.963 32 H 0.014 0.986 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.156 0.844 39 H 0.161 0.839 40 H 0.111 0.889 41 H 0.143 0.857 42 H 0.110 0.890 43 H 0.153 0.847 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.073 -13.971 -22.946 27.781 hybrid contribution -0.548 0.441 1.868 1.996 sum 6.525 -13.531 -21.078 25.883 Atomic orbital electron populations 1.24045 0.95618 1.02806 0.98536 1.23346 0.96764 0.98367 1.01675 1.20818 0.92700 0.96247 0.89142 1.48242 1.11952 1.59864 1.12972 1.18669 0.93719 0.92703 0.80653 1.21683 1.40547 0.94466 1.01381 0.92791 1.25869 0.94694 1.03789 0.94878 1.70050 1.42824 1.38192 1.05774 0.85480 0.78532 0.79004 0.77884 1.18432 1.20388 1.20269 1.21442 0.81295 0.77465 0.91294 1.90638 1.53948 1.58652 1.44593 1.21656 0.97592 1.03071 0.93228 1.20216 0.94499 1.01114 0.93792 1.19883 0.99207 0.94193 0.95414 1.21169 0.99117 0.94810 0.96911 1.21364 1.00474 1.00091 0.93642 1.21880 1.03729 0.97319 0.98156 1.85547 1.78279 1.10082 1.17224 1.23767 1.06088 0.92453 1.08124 1.20909 1.00985 0.93629 0.97473 1.21178 0.97872 1.00375 0.92878 0.86537 0.88482 0.86558 0.90740 0.87511 0.96306 0.98646 0.92430 0.87347 0.86842 0.91194 0.91706 0.84354 0.83863 0.88858 0.85739 0.88968 0.84728 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 14.32 67.78 0.97 -3.14 16 2 C -0.18 -4.82 9.74 25.65 0.25 -4.57 16 3 C 0.13 4.15 5.65 85.64 0.48 4.64 16 4 N -0.60 -25.51 2.44 -830.50 -2.03 -27.53 16 5 C 0.26 14.45 5.16 85.64 0.44 14.89 16 6 C -0.54 -31.54 9.39 25.60 0.24 -31.30 16 7 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 8 C 0.01 0.38 5.46 84.65 0.46 0.85 16 9 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 10 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 11 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 C 0.50 20.36 7.67 87.65 0.67 21.04 16 15 O -0.60 -30.84 15.56 -3.03 -0.05 -30.89 16 16 C -0.12 -3.15 4.23 29.85 0.13 -3.02 16 17 C -0.06 -1.55 4.63 29.85 0.14 -1.41 16 18 C -0.08 -1.85 5.14 -19.83 -0.10 -1.95 16 19 C -0.10 -1.91 9.69 22.25 0.22 -1.70 16 20 C -0.13 -2.28 9.36 22.41 0.21 -2.07 16 21 C -0.10 -1.86 6.11 22.62 0.14 -1.73 16 22 S -0.15 -2.42 22.56 -56.49 -1.27 -3.70 16 23 C -0.14 -1.14 9.15 113.37 1.04 -0.10 16 24 C -0.11 -2.11 9.79 22.41 0.22 -1.89 16 25 C -0.10 -2.15 9.69 22.25 0.22 -1.93 16 26 H 0.12 2.25 8.06 -2.91 -0.02 2.23 16 27 H 0.10 2.34 7.84 -2.91 -0.02 2.32 16 28 H 0.12 2.78 7.83 -2.91 -0.02 2.75 16 29 H 0.07 2.49 7.72 -2.39 -0.02 2.47 16 30 H 0.11 2.60 6.44 -2.39 -0.02 2.59 16 31 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 32 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 33 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.11 2.54 7.40 -2.39 -0.02 2.52 16 35 H 0.11 2.49 7.78 -2.38 -0.02 2.48 16 36 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 37 H 0.06 1.93 8.04 -2.39 -0.02 1.91 16 38 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.14 1.75 5.88 -2.91 -0.02 1.74 16 40 H 0.09 0.66 7.75 -2.39 -0.02 0.64 16 41 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.09 0.66 7.75 -2.39 -0.02 0.64 16 43 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -75.00 384.36 5.65 -69.35 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.97 Total: 15.43 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 5.72 Total: -13.39 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -1.74 Total: -84.06 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.05 Total: -30.89 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -1.27 Total: -3.70 kcal Total: -75.00 5.65 -69.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820231771.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.677 kcal (2) G-P(sol) polarization free energy of solvation -75.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds