Wall clock time and date at job start Tue Mar 31 2020 12:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81403 * 102.99761 * 2 1 4 4 C 1.52998 * 109.46893 * 179.97438 * 3 2 1 5 5 C 1.53045 * 109.45425 * 295.06062 * 4 3 2 6 6 C 1.53191 * 109.31581 * 178.62132 * 5 4 3 7 7 N 1.46926 * 108.77203 * 54.63603 * 6 5 4 8 8 C 1.34776 * 120.62681 * 126.37095 * 7 6 5 9 9 O 1.21612 * 120.00017 * 354.59638 * 8 7 6 10 10 C 1.47428 * 120.00068 * 174.59967 * 8 7 6 11 11 C 1.39231 * 120.27884 * 310.67732 * 10 8 7 12 12 C 1.38222 * 120.09253 * 179.97438 * 11 10 8 13 13 C 1.38835 * 120.67199 * 0.02562 * 12 11 10 14 14 C 1.37592 * 120.57437 * 359.97438 * 13 12 11 15 15 C 1.40713 * 119.87811 * 359.74047 * 14 13 12 16 16 C 1.40888 * 120.32614 * 180.25753 * 15 14 13 17 17 H 1.07999 * 120.00134 * 151.71649 * 16 15 14 18 18 C 1.40278 * 119.99872 * 331.71940 * 16 15 14 19 19 N 1.30627 * 119.99920 * 349.12730 * 18 16 15 20 20 Si 1.86800 * 119.99694 * 169.13601 * 18 16 15 21 21 H 1.48496 * 109.47500 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47043 * 119.99604 * 20 18 16 23 23 H 1.48502 * 109.47112 * 239.99360 * 20 18 16 24 24 C 1.46923 * 118.74251 * 306.39184 * 7 6 5 25 25 C 1.53042 * 109.45925 * 175.00055 * 4 3 2 26 26 H 1.09004 * 109.46772 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47480 * 299.99620 * 1 2 3 28 28 H 1.09001 * 109.47304 * 60.00401 * 1 2 3 29 29 H 1.09001 * 109.46876 * 60.00011 * 3 2 1 30 30 H 1.08992 * 109.47237 * 299.99817 * 3 2 1 31 31 H 1.08999 * 109.45968 * 55.03205 * 4 3 2 32 32 H 1.09004 * 109.49065 * 58.66721 * 5 4 3 33 33 H 1.08996 * 109.49704 * 298.57824 * 5 4 3 34 34 H 1.08999 * 109.58522 * 294.85173 * 6 5 4 35 35 H 1.08999 * 109.58249 * 174.42246 * 6 5 4 36 36 H 1.07997 * 119.95865 * 359.97438 * 11 10 8 37 37 H 1.07997 * 119.66394 * 179.97438 * 12 11 10 38 38 H 1.08002 * 119.70678 * 179.97438 * 13 12 11 39 39 H 1.07998 * 120.06154 * 179.97438 * 14 13 12 40 40 H 0.96996 * 119.99653 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.58607 * 173.39711 * 24 7 6 42 42 H 1.09008 * 109.58397 * 293.67841 * 24 7 6 43 43 H 1.09006 * 109.49589 * 61.42189 * 25 4 3 44 44 H 1.09004 * 109.52486 * 301.34348 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 0.0006 5 6 4.3170 1.3902 1.3082 6 6 5.8421 1.5330 1.2909 7 7 6.1825 2.9374 1.0255 8 6 7.0047 3.6128 1.8527 9 8 7.3939 3.0930 2.8809 10 6 7.4321 4.9818 1.5113 11 6 7.9372 5.2643 0.2449 12 6 8.3363 6.5493 -0.0713 13 6 8.2404 7.5710 0.8639 14 6 7.7454 7.3227 2.1234 15 6 7.3266 6.0244 2.4687 16 6 6.8132 5.7608 3.7539 17 1 6.0995 4.9631 3.8971 18 6 7.2291 6.5346 4.8476 19 7 8.2403 7.3521 4.7224 20 14 6.3370 6.3958 6.4829 21 1 5.2349 5.4077 6.3633 22 1 7.2904 5.9501 7.5306 23 1 5.7761 7.7196 6.8548 24 6 5.6094 3.5917 -0.1586 25 6 4.0868 3.4258 -0.1251 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8030 2.2371 0.8900 30 1 1.8031 2.2371 -0.8899 31 1 4.1698 1.3956 -0.8413 32 1 4.0512 0.3378 1.4082 33 1 3.9086 1.9506 2.1491 34 1 6.2594 0.9014 0.5066 35 1 6.2480 1.2350 2.2576 36 1 8.0173 4.4783 -0.4914 37 1 8.7275 6.7605 -1.0555 38 1 8.5572 8.5693 0.6002 39 1 7.6749 8.1236 2.8445 40 1 8.5280 7.8868 5.4788 41 1 5.8617 4.6520 -0.1482 42 1 6.0096 3.1296 -1.0611 43 1 3.6806 3.9671 0.7294 44 1 3.6572 3.8228 -1.0449 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834339300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:56 Heat of formation + Delta-G solvation = -29.238593 kcal Electronic energy + Delta-G solvation = -24803.107675 eV Core-core repulsion = 21424.528373 eV Total energy + Delta-G solvation = -3378.579303 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.67760 -37.65673 -36.50631 -33.90961 -33.40393 -31.18320 -29.94329 -29.47942 -29.27249 -27.96036 -25.47368 -23.62215 -23.13055 -21.65679 -20.94477 -20.15126 -18.55106 -17.27695 -16.42635 -16.34265 -15.53869 -15.24090 -14.87699 -14.54352 -14.45503 -14.36382 -13.98413 -13.81220 -13.69313 -13.36901 -13.22509 -12.76240 -12.55097 -12.43899 -12.33474 -11.96929 -11.68119 -11.63818 -11.22293 -11.15043 -11.08801 -10.95267 -10.81726 -10.58077 -10.44873 -10.35503 -10.00387 -9.92706 -9.66988 -9.29079 -8.65799 -8.03982 -7.84676 -7.51691 -7.45217 -6.81298 -4.44063 1.47694 2.40082 2.49080 2.79361 3.06776 3.14157 3.19107 3.66822 3.92055 3.94779 4.56564 4.61975 4.64670 4.85537 4.86532 4.90906 5.18170 5.30492 5.39032 5.42048 5.49471 5.51889 5.56675 5.64956 5.83312 5.90427 6.00566 6.04465 6.08381 6.16642 6.21543 6.27637 6.36159 6.47267 6.58768 6.97032 7.09671 7.17186 7.24097 7.45106 7.67504 7.87670 7.96645 8.12483 8.24441 8.54862 8.77919 8.84590 9.25351 10.11257 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014092 B = 0.003760 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.529171 B = 7444.556594 C = 8557.258301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.265 6.265 3 C -0.077 4.077 4 C -0.069 4.069 5 C -0.128 4.128 6 C 0.114 3.886 7 N -0.622 5.622 8 C 0.583 3.417 9 O -0.539 6.539 10 C -0.254 4.254 11 C -0.060 4.060 12 C -0.247 4.247 13 C -0.095 4.095 14 C -0.156 4.156 15 C 0.144 3.856 16 C -0.428 4.428 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.788 5.788 20 Si 0.914 3.086 21 H -0.259 1.259 22 H -0.272 1.272 23 H -0.272 1.272 24 C 0.111 3.889 25 C -0.126 4.126 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.282 0.718 41 H 0.103 0.897 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 -7.481 -9.099 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.039 6.039 3 C -0.225 4.225 4 C -0.089 4.089 5 C -0.167 4.167 6 C -0.009 4.009 7 N -0.358 5.358 8 C 0.376 3.624 9 O -0.416 6.416 10 C -0.258 4.258 11 C -0.079 4.079 12 C -0.266 4.266 13 C -0.114 4.114 14 C -0.175 4.175 15 C 0.141 3.859 16 C -0.456 4.456 17 H 0.098 0.902 18 C -0.144 4.144 19 N -0.413 5.413 20 Si 0.738 3.262 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.013 4.013 25 C -0.166 4.166 26 H 0.117 0.883 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.142 0.858 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.087 -8.489 -8.371 16.280 hybrid contribution -1.206 0.999 0.616 1.683 sum -12.292 -7.490 -7.755 16.351 Atomic orbital electron populations 1.23371 0.94858 1.06284 1.04762 1.86913 1.06659 1.12285 1.97998 1.23553 1.00537 0.93546 1.04865 1.20939 0.91312 0.97250 0.99367 1.22024 0.95959 1.01664 0.97050 1.21408 0.94174 0.82911 1.02407 1.48146 1.48952 1.11649 1.27066 1.18565 0.76600 0.85664 0.81561 1.90676 1.56367 1.69648 1.24909 1.19404 1.17223 0.91994 0.97219 1.20592 0.97770 0.95500 0.94037 1.20272 1.13490 0.93822 0.99056 1.20802 0.99218 0.97055 0.94340 1.21419 1.03845 0.97187 0.95047 1.17396 0.87451 0.89712 0.91373 1.19654 1.21458 1.12978 0.91528 0.90175 1.25990 0.93782 0.93122 1.01502 1.69705 1.19644 1.18948 1.32965 0.86159 0.80395 0.78995 0.80668 1.18305 1.19687 1.19700 1.21734 0.91672 1.00369 0.87497 1.21994 0.97114 0.94835 1.02612 0.88298 0.90588 0.90710 0.90022 0.90110 0.90282 0.90341 0.91366 0.92547 0.89142 0.89037 0.89151 0.89166 0.85790 0.90665 0.87919 0.92490 0.91066 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.76 101.05 1.09 0.18 16 2 S -0.26 -2.72 21.16 -107.50 -2.27 -4.99 16 3 C -0.08 -0.76 5.38 37.16 0.20 -0.56 16 4 C -0.07 -0.78 2.15 -90.58 -0.19 -0.97 16 5 C -0.13 -1.69 5.21 -26.61 -0.14 -1.83 16 6 C 0.11 1.79 6.44 -3.71 -0.02 1.76 16 7 N -0.62 -11.31 2.97 -174.04 -0.52 -11.83 16 8 C 0.58 13.61 6.49 -12.52 -0.08 13.53 16 9 O -0.54 -14.51 15.27 5.27 0.08 -14.43 16 10 C -0.25 -6.13 4.84 -104.37 -0.51 -6.64 16 11 C -0.06 -1.29 7.56 -39.22 -0.30 -1.58 16 12 C -0.25 -5.20 10.03 -39.37 -0.39 -5.60 16 13 C -0.10 -2.13 10.01 -39.60 -0.40 -2.53 16 14 C -0.16 -3.92 8.66 -38.88 -0.34 -4.25 16 15 C 0.14 3.82 5.58 -106.54 -0.59 3.22 16 16 C -0.43 -11.59 7.92 -37.81 -0.30 -11.89 16 17 H 0.08 2.23 7.02 -52.49 -0.37 1.86 16 18 C 0.07 1.91 5.26 -17.30 -0.09 1.82 16 19 N -0.79 -20.32 10.81 55.56 0.60 -19.72 16 20 Si 0.91 19.36 29.58 -169.99 -5.03 14.33 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 C 0.11 1.65 5.30 -3.71 -0.02 1.63 16 25 C -0.13 -1.53 5.36 -26.61 -0.14 -1.67 16 26 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.48 8.14 -51.92 -0.42 0.05 16 29 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.97 7.09 -51.93 -0.37 0.60 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.09 1.60 6.99 -51.93 -0.36 1.24 16 36 H 0.09 1.72 7.39 -52.49 -0.39 1.33 16 37 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.12 3.20 6.18 -52.49 -0.32 2.88 16 40 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 41 H 0.10 1.71 5.16 -51.93 -0.27 1.45 16 42 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -29.74 361.86 -10.62 -40.37 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.71 Total: 6.21 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -2.23 Total: -15.39 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 0.08 Total: -31.55 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.08 Total: -14.43 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -2.27 Total: -4.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.74 -10.62 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834339300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.130 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds