Wall clock time and date at job start Tue Mar 31 2020 12:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81403 * 102.99761 * 2 1 4 4 C 1.52998 * 109.46893 * 179.97438 * 3 2 1 5 5 C 1.53045 * 109.45425 * 295.06062 * 4 3 2 6 6 C 1.53191 * 109.31581 * 178.62132 * 5 4 3 7 7 N 1.46926 * 108.77203 * 54.63603 * 6 5 4 8 8 C 1.34776 * 120.62681 * 126.37095 * 7 6 5 9 9 O 1.21612 * 120.00017 * 354.59638 * 8 7 6 10 10 C 1.47428 * 120.00068 * 174.59967 * 8 7 6 11 11 C 1.39231 * 120.27884 * 310.67732 * 10 8 7 12 12 C 1.38222 * 120.09253 * 179.97438 * 11 10 8 13 13 C 1.38835 * 120.67199 * 0.02562 * 12 11 10 14 14 C 1.37592 * 120.57437 * 359.97438 * 13 12 11 15 15 C 1.40713 * 119.87811 * 359.74047 * 14 13 12 16 16 C 1.40888 * 120.32614 * 180.25753 * 15 14 13 17 17 H 1.07999 * 120.00134 * 151.71649 * 16 15 14 18 18 C 1.40278 * 119.99872 * 331.71940 * 16 15 14 19 19 N 1.30627 * 119.99920 * 349.12730 * 18 16 15 20 20 Si 1.86800 * 119.99694 * 169.13601 * 18 16 15 21 21 H 1.48496 * 109.47500 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47043 * 119.99604 * 20 18 16 23 23 H 1.48502 * 109.47112 * 239.99360 * 20 18 16 24 24 C 1.46923 * 118.74251 * 306.39184 * 7 6 5 25 25 C 1.53042 * 109.45925 * 175.00055 * 4 3 2 26 26 H 1.09004 * 109.46772 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47480 * 299.99620 * 1 2 3 28 28 H 1.09001 * 109.47304 * 60.00401 * 1 2 3 29 29 H 1.09001 * 109.46876 * 60.00011 * 3 2 1 30 30 H 1.08992 * 109.47237 * 299.99817 * 3 2 1 31 31 H 1.08999 * 109.45968 * 55.03205 * 4 3 2 32 32 H 1.09004 * 109.49065 * 58.66721 * 5 4 3 33 33 H 1.08996 * 109.49704 * 298.57824 * 5 4 3 34 34 H 1.08999 * 109.58522 * 294.85173 * 6 5 4 35 35 H 1.08999 * 109.58249 * 174.42246 * 6 5 4 36 36 H 1.07997 * 119.95865 * 359.97438 * 11 10 8 37 37 H 1.07997 * 119.66394 * 179.97438 * 12 11 10 38 38 H 1.08002 * 119.70678 * 179.97438 * 13 12 11 39 39 H 1.07998 * 120.06154 * 179.97438 * 14 13 12 40 40 H 0.96996 * 119.99653 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.58607 * 173.39711 * 24 7 6 42 42 H 1.09008 * 109.58397 * 293.67841 * 24 7 6 43 43 H 1.09006 * 109.49589 * 61.42189 * 25 4 3 44 44 H 1.09004 * 109.52486 * 301.34348 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 0.0006 5 6 4.3170 1.3902 1.3082 6 6 5.8421 1.5330 1.2909 7 7 6.1825 2.9374 1.0255 8 6 7.0047 3.6128 1.8527 9 8 7.3939 3.0930 2.8809 10 6 7.4321 4.9818 1.5113 11 6 7.9372 5.2643 0.2449 12 6 8.3363 6.5493 -0.0713 13 6 8.2404 7.5710 0.8639 14 6 7.7454 7.3227 2.1234 15 6 7.3266 6.0244 2.4687 16 6 6.8132 5.7608 3.7539 17 1 6.0995 4.9631 3.8971 18 6 7.2291 6.5346 4.8476 19 7 8.2403 7.3521 4.7224 20 14 6.3370 6.3958 6.4829 21 1 5.2349 5.4077 6.3633 22 1 7.2904 5.9501 7.5306 23 1 5.7761 7.7196 6.8548 24 6 5.6094 3.5917 -0.1586 25 6 4.0868 3.4258 -0.1251 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8030 2.2371 0.8900 30 1 1.8031 2.2371 -0.8899 31 1 4.1698 1.3956 -0.8413 32 1 4.0512 0.3378 1.4082 33 1 3.9086 1.9506 2.1491 34 1 6.2594 0.9014 0.5066 35 1 6.2480 1.2350 2.2576 36 1 8.0173 4.4783 -0.4914 37 1 8.7275 6.7605 -1.0555 38 1 8.5572 8.5693 0.6002 39 1 7.6749 8.1236 2.8445 40 1 8.5280 7.8868 5.4788 41 1 5.8617 4.6520 -0.1482 42 1 6.0096 3.1296 -1.0611 43 1 3.6806 3.9671 0.7294 44 1 3.6572 3.8228 -1.0449 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834339300.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:55 Heat of formation + Delta-G solvation = -44.257923 kcal Electronic energy + Delta-G solvation = -24803.758962 eV Core-core repulsion = 21424.528373 eV Total energy + Delta-G solvation = -3379.230590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.22672 -39.18555 -38.20011 -35.69566 -34.84385 -32.52205 -31.72966 -31.09176 -29.96065 -29.06656 -27.32373 -25.04110 -24.32673 -23.16421 -22.73448 -21.40875 -20.07069 -19.12442 -18.02389 -17.37679 -17.11508 -16.85611 -16.13455 -16.07913 -15.68940 -15.41726 -15.23288 -15.10611 -14.82773 -14.50116 -14.35601 -14.29070 -14.06599 -13.84211 -13.65493 -13.43825 -13.06135 -12.95240 -12.85832 -12.81944 -12.63274 -12.24136 -12.18609 -12.02352 -11.77518 -11.61484 -11.49075 -11.41979 -11.14065 -10.82584 -10.45910 -9.56976 -9.30333 -9.29488 -8.68400 -8.62480 -6.40943 0.66326 0.76779 1.01037 1.30246 1.44637 1.46119 1.70738 2.04546 2.16469 2.31636 2.71416 3.62446 3.67003 3.69362 3.86008 4.05292 4.19031 4.33682 4.33950 4.35427 4.37394 4.43369 4.47938 4.55308 4.62494 4.64522 4.81701 4.84941 4.89724 4.91249 4.94579 5.01363 5.07683 5.11333 5.13127 5.25339 5.36117 5.41945 5.59171 5.78815 5.87704 6.02426 6.12194 6.29041 6.53585 6.67328 6.87291 6.95080 7.50687 8.26546 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014092 B = 0.003760 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.529171 B = 7444.556594 C = 8557.258301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.307 6.307 3 C -0.067 4.067 4 C -0.061 4.061 5 C -0.119 4.119 6 C 0.110 3.890 7 N -0.613 5.613 8 C 0.575 3.425 9 O -0.592 6.592 10 C -0.266 4.266 11 C -0.056 4.056 12 C -0.233 4.233 13 C -0.094 4.094 14 C -0.182 4.182 15 C 0.114 3.886 16 C -0.466 4.466 17 H 0.055 0.945 18 C 0.036 3.964 19 N -0.818 5.818 20 Si 0.976 3.024 21 H -0.270 1.270 22 H -0.267 1.267 23 H -0.250 1.250 24 C 0.104 3.896 25 C -0.119 4.119 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.290 0.710 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.049 0.951 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.314 -7.782 -12.003 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.081 6.081 3 C -0.215 4.215 4 C -0.080 4.080 5 C -0.157 4.157 6 C -0.012 4.012 7 N -0.347 5.347 8 C 0.367 3.633 9 O -0.473 6.473 10 C -0.271 4.271 11 C -0.074 4.074 12 C -0.252 4.252 13 C -0.112 4.112 14 C -0.201 4.201 15 C 0.110 3.890 16 C -0.495 4.495 17 H 0.073 0.927 18 C -0.180 4.180 19 N -0.444 5.444 20 Si 0.797 3.203 21 H -0.194 1.194 22 H -0.192 1.192 23 H -0.174 1.174 24 C -0.018 4.018 25 C -0.158 4.158 26 H 0.127 0.873 27 H 0.098 0.902 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.326 -8.785 -11.336 18.910 hybrid contribution -0.827 1.017 1.296 1.843 sum -13.153 -7.767 -10.040 18.279 Atomic orbital electron populations 1.23420 0.91834 1.07289 1.05634 1.87037 1.10093 1.12907 1.98108 1.23433 0.99196 0.93235 1.05592 1.20852 0.92525 0.96407 0.98224 1.21923 0.93871 1.02189 0.97716 1.21582 0.96049 0.81698 1.01851 1.48144 1.47157 1.12422 1.26954 1.18633 0.77254 0.85758 0.81606 1.90635 1.58760 1.70723 1.27173 1.19699 1.17225 0.92067 0.98098 1.20910 0.96335 0.96792 0.93383 1.20755 1.11215 0.92991 1.00281 1.21159 0.97740 0.99009 0.93295 1.21373 1.05982 0.96426 0.96351 1.17736 0.88337 0.91001 0.91898 1.19620 1.22950 1.13805 0.93173 0.92719 1.26691 0.94286 0.92674 1.04307 1.69731 1.20542 1.19870 1.34252 0.85250 0.78884 0.79541 0.76579 1.19432 1.19206 1.17356 1.22001 0.93553 0.99325 0.86936 1.21943 0.95017 0.95472 1.03410 0.87256 0.90188 0.89358 0.90571 0.88095 0.88947 0.89231 0.93658 0.89827 0.92075 0.85867 0.85067 0.86292 0.87409 0.89875 0.89705 0.89286 0.93206 0.87621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.76 113.37 1.22 -0.14 16 2 S -0.31 -5.67 21.16 -56.49 -1.20 -6.86 16 3 C -0.07 -1.14 5.38 71.98 0.39 -0.76 16 4 C -0.06 -1.22 2.15 -10.77 -0.02 -1.25 16 5 C -0.12 -3.06 5.21 30.67 0.16 -2.90 16 6 C 0.11 3.46 6.44 86.36 0.56 4.01 16 7 N -0.61 -22.29 2.97 -822.78 -2.45 -24.73 16 8 C 0.57 27.83 6.49 86.66 0.56 28.39 16 9 O -0.59 -33.86 15.27 -4.07 -0.06 -33.92 16 10 C -0.27 -13.14 4.84 -19.70 -0.10 -13.23 16 11 C -0.06 -2.28 7.56 22.50 0.17 -2.11 16 12 C -0.23 -9.12 10.03 22.41 0.22 -8.89 16 13 C -0.09 -4.05 10.01 22.26 0.22 -3.83 16 14 C -0.18 -9.39 8.66 22.72 0.20 -9.19 16 15 C 0.11 6.28 5.58 -21.11 -0.12 6.16 16 16 C -0.47 -26.99 7.92 23.42 0.19 -26.81 16 17 H 0.05 3.31 7.02 -2.91 -0.02 3.29 16 18 C 0.04 1.91 5.26 85.37 0.45 2.36 16 19 N -0.82 -44.04 10.81 21.88 0.24 -43.81 16 20 Si 0.98 41.57 29.58 68.60 2.03 43.60 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 24 C 0.10 2.88 5.30 86.36 0.46 3.33 16 25 C -0.12 -2.62 5.36 30.67 0.16 -2.46 16 26 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.08 0.91 8.14 -2.40 -0.02 0.89 16 28 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 2.14 7.09 -2.39 -0.02 2.12 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 2.28 6.99 -2.39 -0.02 2.27 16 36 H 0.12 4.21 7.39 -2.91 -0.02 4.19 16 37 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 38 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.11 5.82 6.18 -2.91 -0.02 5.80 16 40 H 0.29 14.01 8.29 -92.71 -0.77 13.25 16 41 H 0.08 2.69 5.16 -2.39 -0.01 2.68 16 42 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 Total: -1.00 -69.97 361.86 4.27 -65.70 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.99 Total: 27.33 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 4.72 Total: -27.31 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -2.21 Total: -68.54 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.06 Total: -33.92 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: -5.67 SS G_CDS: -1.20 Total: -6.86 kcal Total: -69.97 4.27 -65.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834339300.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.444 kcal (2) G-P(sol) polarization free energy of solvation -69.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds