Wall clock time and date at job start Tue Mar 31 2020 12:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81404 * 102.99965 * 2 1 4 4 C 1.52999 * 109.47201 * 180.02562 * 3 2 1 5 5 C 1.53046 * 109.45559 * 295.02821 * 4 3 2 6 6 C 1.53191 * 109.30600 * 178.59937 * 5 4 3 7 7 N 1.46926 * 108.76714 * 54.66162 * 6 5 4 8 8 C 1.34773 * 120.63416 * 126.35900 * 7 6 5 9 9 O 1.21588 * 120.00024 * 175.71939 * 8 7 6 10 10 C 1.47635 * 120.00293 * 355.71898 * 8 7 6 11 11 C 1.40016 * 119.89860 * 225.88664 * 10 8 7 12 12 C 1.36316 * 120.10780 * 179.71759 * 11 10 8 13 13 C 1.40887 * 119.89124 * 0.52643 * 12 11 10 14 14 C 1.41105 * 120.10135 * 179.72125 * 13 12 11 15 15 H 1.08004 * 119.99926 * 205.18136 * 14 13 12 16 16 C 1.40224 * 120.00298 * 25.18914 * 14 13 12 17 17 N 1.30656 * 120.00017 * 17.02152 * 16 14 13 18 18 Si 1.86803 * 120.00318 * 197.02819 * 16 14 13 19 19 H 1.48493 * 109.47145 * 59.99455 * 18 16 14 20 20 H 1.48496 * 109.47260 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46843 * 299.99640 * 18 16 14 22 22 C 1.40891 * 119.79187 * 359.74465 * 13 12 11 23 23 C 1.36306 * 119.89234 * 359.97438 * 22 13 12 24 24 C 1.46928 * 118.73372 * 306.37492 * 7 6 5 25 25 C 1.53035 * 109.45961 * 174.97242 * 4 3 2 26 26 H 1.08997 * 109.46967 * 299.99624 * 1 2 3 27 27 H 1.08999 * 109.47228 * 59.99938 * 1 2 3 28 28 H 1.09001 * 109.46894 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47267 * 300.00096 * 3 2 1 30 30 H 1.08999 * 109.46767 * 59.99726 * 3 2 1 31 31 H 1.09001 * 109.45967 * 54.99588 * 4 3 2 32 32 H 1.08999 * 109.49982 * 298.56580 * 5 4 3 33 33 H 1.09000 * 109.49750 * 58.66957 * 5 4 3 34 34 H 1.08996 * 109.60350 * 294.86506 * 6 5 4 35 35 H 1.09007 * 109.70173 * 174.50233 * 6 5 4 36 36 H 1.08004 * 119.93999 * 359.97438 * 11 10 8 37 37 H 1.07998 * 120.05277 * 180.25372 * 12 11 10 38 38 H 0.96993 * 119.99904 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.04841 * 179.97438 * 22 13 12 40 40 H 1.08002 * 119.94832 * 179.97438 * 23 22 13 41 41 H 1.08996 * 109.58848 * 293.82381 * 24 7 6 42 42 H 1.09005 * 109.70451 * 173.46416 * 24 7 6 43 43 H 1.09001 * 109.50017 * 301.33521 * 25 4 3 44 44 H 1.09004 * 109.49821 * 61.40644 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9400 -0.0006 5 6 4.3183 1.3907 1.3066 6 6 5.8434 1.5332 1.2875 7 7 6.1837 2.9375 1.0216 8 6 7.0067 3.6130 1.8479 9 8 7.3427 4.7495 1.5758 10 6 7.5003 2.9732 3.0834 11 6 7.4768 3.6792 4.2924 12 6 7.9262 3.0906 5.4368 13 6 8.4251 1.7735 5.3998 14 6 8.8969 1.1620 6.5807 15 1 9.6250 0.3664 6.5231 16 6 8.4202 1.5871 7.8291 17 7 7.3236 2.2934 7.9037 18 14 9.3533 1.1439 9.3855 19 1 10.7266 1.7045 9.3159 20 1 8.6476 1.7089 10.5636 21 1 9.4277 -0.3337 9.5142 22 6 8.4520 1.0692 4.1799 23 6 7.9952 1.6641 3.0418 24 6 5.6094 3.5915 -0.1621 25 6 4.0868 3.4257 -0.1271 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8032 2.2372 -0.8900 30 1 1.8031 2.2371 0.8900 31 1 4.1693 1.3952 -0.8427 32 1 3.9107 1.9515 2.1478 33 1 4.0526 0.3384 1.4074 34 1 6.2599 0.9014 0.5031 35 1 6.2525 1.2347 2.2528 36 1 7.0982 4.6903 4.3188 37 1 7.9039 3.6345 6.3696 38 1 6.9941 2.5878 8.7671 39 1 8.8340 0.0595 4.1467 40 1 8.0158 1.1252 2.1060 41 1 6.0068 3.1276 -1.0648 42 1 5.8617 4.6519 -0.1548 43 1 3.6564 3.8220 -1.0468 44 1 3.6811 3.9673 0.7274 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834357948.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:58 Heat of formation + Delta-G solvation = -28.776858 kcal Electronic energy + Delta-G solvation = -24251.004748 eV Core-core repulsion = 20872.445468 eV Total energy + Delta-G solvation = -3378.559280 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.86322 -37.72860 -36.85469 -34.01783 -33.58147 -31.26664 -30.02896 -29.52105 -29.27604 -28.16998 -25.89492 -23.54590 -23.21152 -21.53480 -20.98809 -20.26761 -18.72553 -17.53173 -16.61672 -16.37049 -15.66539 -15.39699 -14.98355 -14.72955 -14.50956 -14.25307 -13.98667 -13.84775 -13.74558 -13.41486 -13.28780 -12.86807 -12.76609 -12.39914 -12.16904 -12.11050 -11.99571 -11.69558 -11.44907 -11.23108 -11.18050 -11.06099 -10.93443 -10.68576 -10.59321 -10.35902 -10.04878 -10.01113 -9.52212 -9.30288 -8.94827 -8.24266 -7.84960 -7.66418 -7.47606 -6.96145 -4.55141 1.46251 2.37240 2.38974 2.95615 2.97642 2.99969 3.03716 3.48683 3.71658 3.79468 4.46639 4.56141 4.58489 4.77855 4.85149 4.88225 5.11910 5.21997 5.30710 5.39949 5.41337 5.43827 5.52063 5.55714 5.70512 5.80355 5.90604 5.94906 6.03151 6.11442 6.16179 6.26173 6.26811 6.40561 6.81827 6.86687 6.99980 7.06899 7.14476 7.46344 7.62316 7.81482 7.89015 8.04691 8.13128 8.45977 8.68382 8.78785 8.95475 9.96234 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.014622 B = 0.003102 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.515745 B = 9023.798334 C =10278.312994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.260 6.260 3 C -0.078 4.078 4 C -0.070 4.070 5 C -0.130 4.130 6 C 0.096 3.904 7 N -0.617 5.617 8 C 0.579 3.421 9 O -0.566 6.566 10 C -0.273 4.273 11 C -0.045 4.045 12 C -0.175 4.175 13 C 0.126 3.874 14 C -0.448 4.448 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.776 5.776 18 Si 0.912 3.088 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.263 1.263 22 C -0.232 4.232 23 C -0.058 4.058 24 C 0.114 3.886 25 C -0.123 4.123 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.286 0.714 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.160 -3.122 -11.451 16.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.034 6.034 3 C -0.226 4.226 4 C -0.090 4.090 5 C -0.168 4.168 6 C -0.026 4.026 7 N -0.351 5.351 8 C 0.373 3.627 9 O -0.447 6.447 10 C -0.278 4.278 11 C -0.065 4.065 12 C -0.195 4.195 13 C 0.123 3.877 14 C -0.476 4.476 15 H 0.101 0.899 16 C -0.146 4.146 17 N -0.399 5.399 18 Si 0.736 3.264 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.187 1.187 22 C -0.252 4.252 23 C -0.076 4.076 24 C -0.009 4.009 25 C -0.163 4.163 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.139 0.861 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.508 -3.294 -11.417 15.863 hybrid contribution -0.778 0.750 0.677 1.275 sum -11.286 -2.545 -10.740 15.786 Atomic orbital electron populations 1.23380 0.94877 1.06372 1.04710 1.86976 1.06623 1.11816 1.97978 1.23535 1.00403 0.93945 1.04747 1.20950 0.91498 0.96861 0.99683 1.22050 0.95919 1.02105 0.96767 1.22142 0.94674 0.81857 1.03950 1.48043 1.48233 1.12689 1.26093 1.18794 0.76492 0.84722 0.82660 1.90643 1.59167 1.19659 1.75187 1.18824 1.19088 0.97235 0.92613 1.20337 0.97258 0.97082 0.91777 1.20989 1.05922 0.95545 0.97022 1.17733 0.87147 0.90805 0.92014 1.19747 1.21057 1.16680 0.90159 0.89925 1.26059 0.93827 0.93120 1.01552 1.69733 1.16085 1.26003 1.28116 0.86290 0.80691 0.79998 0.79419 1.18559 1.20128 1.18745 1.20684 1.11494 0.99415 0.93568 1.20380 0.97471 0.92907 0.96880 1.21406 0.91829 0.99734 0.87919 1.21960 0.96651 0.95306 1.02410 0.90554 0.90775 0.88214 0.90250 0.90028 0.90222 0.91202 0.89957 0.92289 0.86700 0.88964 0.86147 0.90293 0.88456 0.88660 0.92279 0.89169 0.91052 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.76 101.05 1.09 0.18 16 2 S -0.26 -2.66 21.16 -107.50 -2.28 -4.93 16 3 C -0.08 -0.73 5.38 37.16 0.20 -0.53 16 4 C -0.07 -0.75 2.15 -90.58 -0.19 -0.95 16 5 C -0.13 -1.67 5.21 -26.61 -0.14 -1.81 16 6 C 0.10 1.43 5.20 -3.71 -0.02 1.41 16 7 N -0.62 -10.43 2.97 -173.95 -0.52 -10.95 16 8 C 0.58 12.38 7.27 -12.43 -0.09 12.28 16 9 O -0.57 -13.63 16.42 5.29 0.09 -13.55 16 10 C -0.27 -6.21 5.20 -104.73 -0.54 -6.75 16 11 C -0.05 -1.09 9.62 -39.61 -0.38 -1.48 16 12 C -0.18 -4.46 8.63 -39.27 -0.34 -4.80 16 13 C 0.13 3.20 5.57 -106.80 -0.60 2.60 16 14 C -0.45 -11.19 9.05 -37.75 -0.34 -11.53 16 15 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 16 C 0.08 1.78 5.15 -17.31 -0.09 1.69 16 17 N -0.78 -18.94 10.94 55.56 0.61 -18.33 16 18 Si 0.91 17.57 29.59 -169.99 -5.03 12.54 16 19 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 20 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 22 C -0.23 -5.35 9.73 -39.27 -0.38 -5.73 16 23 C -0.06 -1.23 7.23 -39.61 -0.29 -1.52 16 24 C 0.11 1.58 6.42 -3.71 -0.02 1.56 16 25 C -0.12 -1.36 5.36 -26.61 -0.14 -1.50 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.03 7.09 -51.93 -0.37 0.66 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.12 1.96 4.22 -51.92 -0.22 1.74 16 36 H 0.09 2.17 8.06 -52.48 -0.42 1.74 16 37 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 38 H 0.29 6.33 8.29 -40.82 -0.34 6.00 16 39 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 40 H 0.10 1.77 6.58 -52.49 -0.35 1.42 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 1.38 7.04 -51.93 -0.37 1.02 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 363.30 15.07 5.47 5.47 Total: -1.00 -28.25 363.30 -10.60 -38.85 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -6.67 Total: 7.76 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.28 Total: -16.87 kcal Atomic # 7 Polarization: -29.37 SS G_CDS: 0.09 Total: -29.28 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.09 Total: -13.55 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -2.28 Total: -4.93 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.25 -10.60 -38.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834357948.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.078 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds