Wall clock time and date at job start Tue Mar 31 2020 12:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00058 * 2 1 4 4 O 1.21282 * 119.99757 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00246 * 180.02562 * 3 2 1 6 6 C 1.50698 * 109.47200 * 60.00216 * 5 3 2 7 7 N 1.27942 * 119.99940 * 25.00092 * 6 5 3 8 8 Si 1.86800 * 119.99876 * 205.00128 * 6 5 3 9 9 H 1.48502 * 109.47219 * 59.99938 * 8 6 5 10 10 H 1.48510 * 109.47128 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47532 * 299.99678 * 8 6 5 12 12 C 1.50704 * 109.47444 * 180.02562 * 5 3 2 13 13 O 1.20762 * 119.99618 * 335.00485 * 12 5 3 14 14 C 1.50691 * 120.00362 * 154.99525 * 12 5 3 15 15 C 1.50699 * 109.47261 * 179.97438 * 14 12 5 16 16 C 1.38229 * 120.00230 * 270.27992 * 15 14 12 17 17 C 1.38238 * 120.00124 * 180.28369 * 16 15 14 18 18 C 1.38234 * 119.99675 * 359.45911 * 17 16 15 19 19 Si 1.86803 * 119.99940 * 180.28096 * 18 17 16 20 20 C 1.86301 * 109.46852 * 90.00443 * 19 18 17 21 21 C 1.86305 * 109.47191 * 210.00145 * 19 18 17 22 22 C 1.86296 * 109.47316 * 330.00190 * 19 18 17 23 23 C 1.38234 * 120.00240 * 0.26327 * 18 17 16 24 24 C 1.38234 * 119.99755 * 90.00358 * 15 14 12 25 25 H 1.09000 * 109.46872 * 299.99606 * 1 2 3 26 26 H 1.08996 * 109.47311 * 59.99465 * 1 2 3 27 27 H 1.08998 * 109.47404 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00154 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47276 * 300.00271 * 5 3 2 30 30 H 0.97000 * 119.99551 * 180.02562 * 7 6 5 31 31 H 1.09007 * 109.46663 * 60.00143 * 14 12 5 32 32 H 1.08998 * 109.47798 * 300.00583 * 14 12 5 33 33 H 1.08004 * 120.00244 * 0.02562 * 16 15 14 34 34 H 1.08002 * 120.00519 * 179.74530 * 17 16 15 35 35 H 1.08992 * 109.47179 * 60.00150 * 20 19 18 36 36 H 1.09007 * 109.47049 * 179.97438 * 20 19 18 37 37 H 1.08994 * 109.47120 * 299.99515 * 20 19 18 38 38 H 1.09002 * 109.46698 * 60.00064 * 21 19 18 39 39 H 1.08998 * 109.47017 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.46851 * 300.00496 * 21 19 18 41 41 H 1.09006 * 109.46796 * 60.00075 * 22 19 18 42 42 H 1.08998 * 109.47288 * 179.97438 * 22 19 18 43 43 H 1.09002 * 109.47253 * 300.00352 * 22 19 18 44 44 H 1.07997 * 120.00460 * 180.02562 * 23 18 17 45 45 H 1.08001 * 120.00274 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1477 0.4572 -1.2314 7 7 3.4138 0.3941 -2.2775 8 14 5.8414 -0.3308 -1.2297 9 1 5.9045 -1.3664 -0.1673 10 1 6.0955 -0.9609 -2.5503 11 1 6.8704 0.7080 -0.9702 12 6 4.1482 2.5881 0.0002 13 8 3.4556 3.4736 -0.4409 14 6 5.5146 2.9039 0.5515 15 6 5.7734 4.3840 0.4354 16 6 6.3635 4.8951 -0.7054 17 6 6.6062 6.2520 -0.8094 18 6 6.2486 7.0992 0.2227 19 14 6.5694 8.9338 0.0789 20 6 5.0930 9.7634 -0.6977 21 6 6.8623 9.6479 1.7745 22 6 8.0727 9.2200 -0.9836 23 6 5.6532 6.5888 1.3611 24 6 5.4154 5.2312 1.4673 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9500 -0.8400 -0.0004 29 1 4.0096 0.6532 0.8891 30 1 3.7367 -0.0633 -3.0696 31 1 6.2697 2.3579 -0.0143 32 1 5.5611 2.6077 1.5994 33 1 6.6388 4.2338 -1.5137 34 1 7.0711 6.6509 -1.6990 35 1 4.2136 9.5960 -0.0760 36 1 5.2800 10.8340 -0.7812 37 1 4.9217 9.3457 -1.6897 38 1 7.7261 9.1625 2.2288 39 1 7.0491 10.7185 1.6906 40 1 5.9827 9.4804 2.3962 41 1 7.9013 8.8023 -1.9757 42 1 8.2596 10.2906 -1.0679 43 1 8.9365 8.7346 -0.5293 44 1 5.3734 7.2507 2.1673 45 1 4.9506 4.8324 2.3569 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838786517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:16 Heat of formation + Delta-G solvation = -60.934270 kcal Electronic energy + Delta-G solvation = -24507.129835 eV Core-core repulsion = 21033.973942 eV Total energy + Delta-G solvation = -3473.155893 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.59628 -40.11463 -38.99918 -37.01580 -35.33231 -33.82022 -32.03681 -31.72410 -29.57425 -28.56111 -28.38161 -28.32098 -27.17902 -23.35351 -23.09740 -22.65555 -21.40013 -20.17323 -18.86158 -17.56240 -17.46163 -17.34036 -16.69188 -16.12646 -16.06954 -15.91465 -15.30797 -15.25239 -14.89587 -14.26595 -14.23479 -14.15279 -14.10889 -13.98952 -13.97660 -13.75699 -13.53170 -13.37391 -13.23618 -13.18070 -13.15592 -13.10124 -13.02822 -12.93995 -12.69419 -12.43600 -11.89494 -11.72017 -11.13266 -10.94244 -10.83480 -10.72696 -10.34873 -10.11358 -9.95770 -9.61845 -9.40852 0.35442 0.44395 0.67365 0.70810 1.04661 1.12329 1.39979 1.53540 1.81754 1.83732 1.93434 2.02845 2.24579 2.63744 2.89697 3.12580 3.24510 3.64309 3.74989 3.89558 3.99539 4.24100 4.30591 4.34965 4.47214 4.49293 4.56001 4.64295 4.67347 4.75409 4.77239 4.78389 4.81219 4.85896 4.85987 4.87666 4.96930 5.19359 5.30259 5.49011 5.50697 5.56497 5.59849 5.63405 5.75349 5.78110 6.28716 6.50880 6.55464 6.60153 7.38077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.730 5.730 3 C 0.536 3.464 4 O -0.506 6.506 5 C -0.134 4.134 6 C -0.010 4.010 7 N -0.601 5.601 8 Si 0.930 3.070 9 H -0.224 1.224 10 H -0.240 1.240 11 H -0.224 1.224 12 C 0.362 3.638 13 O -0.379 6.379 14 C -0.137 4.137 15 C -0.068 4.068 16 C -0.120 4.120 17 C -0.087 4.087 18 C -0.369 4.369 19 Si 1.057 2.943 20 C -0.450 4.450 21 C -0.448 4.448 22 C -0.448 4.448 23 C -0.086 4.086 24 C -0.116 4.116 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.398 0.602 29 H 0.138 0.862 30 H 0.348 0.652 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.757 -5.670 1.927 7.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.382 5.382 3 C 0.320 3.680 4 O -0.379 6.379 5 C -0.157 4.157 6 C -0.259 4.259 7 N -0.214 5.214 8 Si 0.744 3.256 9 H -0.146 1.146 10 H -0.162 1.162 11 H -0.147 1.147 12 C 0.229 3.771 13 O -0.245 6.245 14 C -0.174 4.174 15 C -0.068 4.068 16 C -0.138 4.138 17 C -0.105 4.105 18 C -0.411 4.411 19 Si 1.249 2.751 20 C -0.557 4.557 21 C -0.556 4.556 22 C -0.556 4.556 23 C -0.104 4.104 24 C -0.135 4.135 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.231 0.769 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.138 0.862 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.706 -4.476 1.408 5.979 hybrid contribution 0.498 -1.184 -0.286 1.316 sum 4.204 -5.660 1.123 7.140 Atomic orbital electron populations 1.21516 0.79130 1.02186 1.02483 1.45582 1.07806 1.08170 1.76602 1.19553 0.88035 0.84127 0.76310 1.90830 1.69210 1.30734 1.47087 1.21315 0.95891 0.98964 0.99508 1.29841 1.05030 0.97028 0.94010 1.68153 1.37986 1.12909 1.02393 0.85841 0.74455 0.81647 0.83690 1.14613 1.16206 1.14654 1.23680 0.88161 0.87932 0.77327 1.90554 1.55145 1.47645 1.31139 1.21326 0.96465 0.95087 1.04505 1.19339 0.98866 0.93589 0.95014 1.21028 0.99906 0.95977 0.96873 1.21009 0.98051 0.93092 0.98317 1.27349 1.01680 1.16305 0.95766 0.78200 0.67176 0.62434 0.67286 1.26130 1.14769 1.07350 1.07468 1.26122 1.04950 1.06795 1.17724 1.26124 1.14965 1.04880 1.09625 1.21026 0.97024 0.94778 0.97566 1.21057 0.99907 0.94013 0.98475 0.92190 0.92098 0.90680 0.76921 0.84414 0.83347 0.87321 0.86917 0.86704 0.86246 0.91144 0.91148 0.91188 0.91085 0.91027 0.91170 0.91216 0.91021 0.91088 0.86182 0.86432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.02 10.70 59.85 0.64 0.66 16 2 N -0.73 -0.22 5.55 -67.08 -0.37 -0.60 16 3 C 0.54 1.78 6.43 -10.99 -0.07 1.71 16 4 O -0.51 -4.34 14.52 -18.21 -0.26 -4.61 16 5 C -0.13 0.05 2.39 -94.08 -0.23 -0.18 16 6 C -0.01 0.02 4.62 -13.90 -0.06 -0.05 16 7 N -0.60 -0.22 12.86 56.23 0.72 0.51 16 8 Si 0.93 -3.71 28.41 -169.99 -4.83 -8.54 16 9 H -0.22 1.03 7.11 56.52 0.40 1.43 16 10 H -0.24 0.72 7.11 56.52 0.40 1.12 16 11 H -0.22 0.94 5.97 56.52 0.34 1.27 16 12 C 0.36 0.77 6.09 -29.04 -0.18 0.59 16 13 O -0.38 -2.80 14.36 -17.77 -0.26 -3.05 16 14 C -0.14 0.11 5.60 -29.04 -0.16 -0.06 16 15 C -0.07 -0.15 4.37 -104.63 -0.46 -0.60 16 16 C -0.12 -0.28 9.70 -39.58 -0.38 -0.66 16 17 C -0.09 -0.17 9.29 -39.58 -0.37 -0.53 16 18 C -0.37 -0.53 4.59 -39.58 -0.18 -0.71 16 19 Si 1.06 -1.23 12.32 -169.99 -2.09 -3.33 16 20 C -0.45 -0.11 8.65 101.05 0.87 0.76 16 21 C -0.45 0.38 8.53 101.05 0.86 1.24 16 22 C -0.45 0.40 8.53 101.05 0.86 1.26 16 23 C -0.09 -0.17 9.29 -39.58 -0.37 -0.54 16 24 C -0.12 -0.28 9.70 -39.58 -0.38 -0.66 16 25 H 0.06 0.06 8.14 -51.93 -0.42 -0.37 16 26 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 27 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 28 H 0.40 -1.15 8.72 -40.82 -0.36 -1.51 16 29 H 0.14 -0.71 7.85 -51.93 -0.41 -1.12 16 30 H 0.35 -0.61 8.23 -40.82 -0.34 -0.95 16 31 H 0.11 -0.33 5.89 -51.93 -0.31 -0.63 16 32 H 0.11 -0.41 8.09 -51.93 -0.42 -0.83 16 33 H 0.11 0.07 8.06 -52.48 -0.42 -0.35 16 34 H 0.12 -0.01 7.43 -52.49 -0.39 -0.40 16 35 H 0.07 0.05 7.96 -51.93 -0.41 -0.36 16 36 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 37 H 0.07 0.05 7.96 -51.93 -0.41 -0.36 16 38 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 39 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 40 H 0.07 -0.06 7.69 -51.93 -0.40 -0.46 16 41 H 0.07 -0.07 7.69 -51.93 -0.40 -0.46 16 42 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 43 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 44 H 0.12 0.01 7.43 -52.49 -0.39 -0.38 16 45 H 0.12 0.09 8.06 -52.49 -0.42 -0.33 16 LS Contribution 382.00 15.07 5.76 5.76 Total: 0.00 -11.40 382.00 -8.21 -19.61 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: -7.27 Total: -7.98 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 0.40 Total: 2.23 kcal Atomic # 7 Polarization: -0.44 SS G_CDS: 0.35 Total: -0.09 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.52 Total: -7.66 kcal Atomic # 14 Polarization: -4.95 SS G_CDS: -6.92 Total: -11.87 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -11.40 -8.21 -19.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838786517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.323 kcal (2) G-P(sol) polarization free energy of solvation -11.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds