Wall clock time and date at job start Tue Mar 31 2020 12:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00058 * 2 1 4 4 O 1.21282 * 119.99757 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00246 * 180.02562 * 3 2 1 6 6 C 1.50698 * 109.47200 * 60.00216 * 5 3 2 7 7 N 1.27942 * 119.99940 * 25.00092 * 6 5 3 8 8 Si 1.86800 * 119.99876 * 205.00128 * 6 5 3 9 9 H 1.48502 * 109.47219 * 59.99938 * 8 6 5 10 10 H 1.48510 * 109.47128 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47532 * 299.99678 * 8 6 5 12 12 C 1.50704 * 109.47444 * 180.02562 * 5 3 2 13 13 O 1.20762 * 119.99618 * 335.00485 * 12 5 3 14 14 C 1.50691 * 120.00362 * 154.99525 * 12 5 3 15 15 C 1.50699 * 109.47261 * 179.97438 * 14 12 5 16 16 C 1.38229 * 120.00230 * 270.27992 * 15 14 12 17 17 C 1.38238 * 120.00124 * 180.28369 * 16 15 14 18 18 C 1.38234 * 119.99675 * 359.45911 * 17 16 15 19 19 Si 1.86803 * 119.99940 * 180.28096 * 18 17 16 20 20 C 1.86301 * 109.46852 * 90.00443 * 19 18 17 21 21 C 1.86305 * 109.47191 * 210.00145 * 19 18 17 22 22 C 1.86296 * 109.47316 * 330.00190 * 19 18 17 23 23 C 1.38234 * 120.00240 * 0.26327 * 18 17 16 24 24 C 1.38234 * 119.99755 * 90.00358 * 15 14 12 25 25 H 1.09000 * 109.46872 * 299.99606 * 1 2 3 26 26 H 1.08996 * 109.47311 * 59.99465 * 1 2 3 27 27 H 1.08998 * 109.47404 * 179.97438 * 1 2 3 28 28 H 0.97000 * 120.00154 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47276 * 300.00271 * 5 3 2 30 30 H 0.97000 * 119.99551 * 180.02562 * 7 6 5 31 31 H 1.09007 * 109.46663 * 60.00143 * 14 12 5 32 32 H 1.08998 * 109.47798 * 300.00583 * 14 12 5 33 33 H 1.08004 * 120.00244 * 0.02562 * 16 15 14 34 34 H 1.08002 * 120.00519 * 179.74530 * 17 16 15 35 35 H 1.08992 * 109.47179 * 60.00150 * 20 19 18 36 36 H 1.09007 * 109.47049 * 179.97438 * 20 19 18 37 37 H 1.08994 * 109.47120 * 299.99515 * 20 19 18 38 38 H 1.09002 * 109.46698 * 60.00064 * 21 19 18 39 39 H 1.08998 * 109.47017 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.46851 * 300.00496 * 21 19 18 41 41 H 1.09006 * 109.46796 * 60.00075 * 22 19 18 42 42 H 1.08998 * 109.47288 * 179.97438 * 22 19 18 43 43 H 1.09002 * 109.47253 * 300.00352 * 22 19 18 44 44 H 1.07997 * 120.00460 * 180.02562 * 23 18 17 45 45 H 1.08001 * 120.00274 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1477 0.4572 -1.2314 7 7 3.4138 0.3941 -2.2775 8 14 5.8414 -0.3308 -1.2297 9 1 5.9045 -1.3664 -0.1673 10 1 6.0955 -0.9609 -2.5503 11 1 6.8704 0.7080 -0.9702 12 6 4.1482 2.5881 0.0002 13 8 3.4556 3.4736 -0.4409 14 6 5.5146 2.9039 0.5515 15 6 5.7734 4.3840 0.4354 16 6 6.3635 4.8951 -0.7054 17 6 6.6062 6.2520 -0.8094 18 6 6.2486 7.0992 0.2227 19 14 6.5694 8.9338 0.0789 20 6 5.0930 9.7634 -0.6977 21 6 6.8623 9.6479 1.7745 22 6 8.0727 9.2200 -0.9836 23 6 5.6532 6.5888 1.3611 24 6 5.4154 5.2312 1.4673 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9500 -0.8400 -0.0004 29 1 4.0096 0.6532 0.8891 30 1 3.7367 -0.0633 -3.0696 31 1 6.2697 2.3579 -0.0143 32 1 5.5611 2.6077 1.5994 33 1 6.6388 4.2338 -1.5137 34 1 7.0711 6.6509 -1.6990 35 1 4.2136 9.5960 -0.0760 36 1 5.2800 10.8340 -0.7812 37 1 4.9217 9.3457 -1.6897 38 1 7.7261 9.1625 2.2288 39 1 7.0491 10.7185 1.6906 40 1 5.9827 9.4804 2.3962 41 1 7.9013 8.8023 -1.9757 42 1 8.2596 10.2906 -1.0679 43 1 8.9365 8.7346 -0.5293 44 1 5.3734 7.2507 2.1673 45 1 4.9506 4.8324 2.3569 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838786517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:16 Heat of formation + Delta-G solvation = -57.873109 kcal Electronic energy + Delta-G solvation = -24506.997094 eV Core-core repulsion = 21033.973942 eV Total energy + Delta-G solvation = -3473.023151 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74143 -40.23292 -39.17316 -37.01131 -35.51854 -33.86659 -32.07159 -31.79578 -29.53375 -28.61511 -28.30527 -28.29909 -27.21951 -23.43071 -23.11409 -22.75912 -21.49114 -20.24211 -18.85732 -17.62818 -17.47939 -17.35819 -16.73167 -16.25798 -16.15352 -16.00224 -15.42056 -15.33720 -14.74627 -14.28856 -14.23244 -14.17797 -14.12661 -13.97246 -13.93182 -13.78000 -13.54460 -13.40448 -13.19793 -13.15619 -13.11855 -13.10413 -12.99091 -12.86354 -12.67072 -12.21023 -11.85007 -11.54076 -11.27747 -10.94337 -10.76598 -10.75710 -10.50692 -10.12589 -10.01629 -9.72825 -9.47508 0.34273 0.52740 0.59712 0.92548 1.04485 1.48478 1.64260 1.74668 1.85922 1.90963 2.03615 2.06745 2.22264 2.66954 2.85001 3.15945 3.27359 3.63162 3.75763 3.97381 4.12554 4.20128 4.35119 4.41655 4.49815 4.56437 4.59888 4.63252 4.69333 4.77448 4.80284 4.80725 4.87394 4.87914 4.89576 4.89910 4.90467 5.14758 5.23268 5.42411 5.49689 5.56071 5.61402 5.64325 5.68668 5.71679 6.22992 6.49558 6.55462 6.71759 7.26858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.717 5.717 3 C 0.526 3.474 4 O -0.570 6.570 5 C -0.138 4.138 6 C -0.011 4.011 7 N -0.645 5.645 8 Si 0.978 3.022 9 H -0.201 1.201 10 H -0.259 1.259 11 H -0.216 1.216 12 C 0.366 3.634 13 O -0.445 6.445 14 C -0.136 4.136 15 C -0.082 4.082 16 C -0.140 4.140 17 C -0.104 4.104 18 C -0.387 4.387 19 Si 1.117 2.883 20 C -0.467 4.467 21 C -0.456 4.456 22 C -0.455 4.455 23 C -0.104 4.104 24 C -0.137 4.137 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.110 0.890 28 H 0.416 0.584 29 H 0.193 0.807 30 H 0.356 0.644 31 H 0.137 0.863 32 H 0.148 0.852 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.133 0.867 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.832 -7.350 2.900 10.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.369 5.369 3 C 0.311 3.689 4 O -0.448 6.448 5 C -0.161 4.161 6 C -0.256 4.256 7 N -0.260 5.260 8 Si 0.788 3.212 9 H -0.122 1.122 10 H -0.182 1.182 11 H -0.138 1.138 12 C 0.237 3.763 13 O -0.314 6.314 14 C -0.172 4.172 15 C -0.082 4.082 16 C -0.158 4.158 17 C -0.122 4.122 18 C -0.426 4.426 19 Si 1.305 2.695 20 C -0.573 4.573 21 C -0.564 4.564 22 C -0.563 4.563 23 C -0.122 4.122 24 C -0.155 4.155 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.128 0.872 28 H 0.252 0.748 29 H 0.210 0.790 30 H 0.175 0.825 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.151 0.849 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.773 -6.230 2.394 8.825 hybrid contribution -0.228 -0.682 -0.621 0.950 sum 5.545 -6.913 1.773 9.037 Atomic orbital electron populations 1.21560 0.79268 1.03896 1.00835 1.45547 1.07949 1.08377 1.75016 1.20292 0.89762 0.83758 0.75062 1.90803 1.70828 1.33011 1.50167 1.21616 0.93271 0.98557 1.02638 1.30503 1.06609 0.95882 0.92656 1.68180 1.39949 1.14456 1.03454 0.85236 0.71158 0.81496 0.83292 1.12213 1.18241 1.13805 1.24357 0.88561 0.88229 0.75186 1.90548 1.57085 1.49565 1.34233 1.21497 0.95135 0.93645 1.06917 1.19691 0.98436 0.95324 0.94753 1.21355 1.00389 0.96591 0.97490 1.21341 0.98367 0.93396 0.99085 1.27929 1.01237 1.18044 0.95435 0.77296 0.65717 0.59922 0.66543 1.26361 1.15622 1.08152 1.07156 1.26199 1.05064 1.07186 1.17912 1.26191 1.15100 1.05265 1.09748 1.21350 0.97310 0.95197 0.98347 1.21368 1.00326 0.94558 0.99267 0.93165 0.94524 0.87182 0.74815 0.78982 0.82539 0.84534 0.83403 0.85618 0.84883 0.91986 0.90490 0.91950 0.90879 0.90539 0.91191 0.91156 0.90532 0.90871 0.84945 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.12 10.70 127.77 1.37 1.49 16 2 N -0.72 -0.66 5.55 -484.54 -2.69 -3.35 16 3 C 0.53 4.09 6.43 87.65 0.56 4.66 16 4 O -0.57 -11.60 14.52 19.69 0.29 -11.31 16 5 C -0.14 0.19 2.39 -13.03 -0.03 0.15 16 6 C -0.01 0.04 4.62 88.67 0.41 0.45 16 7 N -0.65 -0.92 12.86 24.11 0.31 -0.61 16 8 Si 0.98 -10.45 28.41 68.60 1.95 -8.50 16 9 H -0.20 2.78 7.11 99.48 0.71 3.48 16 10 H -0.26 1.93 7.11 99.48 0.71 2.64 16 11 H -0.22 2.57 5.97 99.48 0.59 3.16 16 12 C 0.37 1.69 6.09 29.10 0.18 1.87 16 13 O -0.44 -7.73 14.36 21.27 0.31 -7.42 16 14 C -0.14 0.37 5.60 29.10 0.16 0.54 16 15 C -0.08 -0.39 4.37 -19.87 -0.09 -0.47 16 16 C -0.14 -0.76 9.70 22.27 0.22 -0.54 16 17 C -0.10 -0.50 9.29 22.27 0.21 -0.29 16 18 C -0.39 -1.48 4.59 22.27 0.10 -1.38 16 19 Si 1.12 -2.26 12.32 68.60 0.85 -1.41 16 20 C -0.47 -0.71 8.65 113.37 0.98 0.27 16 21 C -0.46 0.85 8.53 113.37 0.97 1.82 16 22 C -0.46 0.94 8.53 113.37 0.97 1.91 16 23 C -0.10 -0.53 9.29 22.27 0.21 -0.32 16 24 C -0.14 -0.78 9.70 22.27 0.22 -0.56 16 25 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.04 0.24 8.14 -2.39 -0.02 0.22 16 27 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 28 H 0.42 -2.83 8.72 -92.71 -0.81 -3.64 16 29 H 0.19 -2.58 7.85 -2.39 -0.02 -2.60 16 30 H 0.36 -0.94 8.23 -92.71 -0.76 -1.70 16 31 H 0.14 -1.17 5.89 -2.38 -0.01 -1.19 16 32 H 0.15 -1.48 8.09 -2.39 -0.02 -1.50 16 33 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16 34 H 0.13 0.08 7.43 -2.91 -0.02 0.06 16 35 H 0.06 0.19 7.96 -2.39 -0.02 0.17 16 36 H 0.08 -0.01 7.96 -2.38 -0.02 -0.03 16 37 H 0.06 0.18 7.96 -2.39 -0.02 0.16 16 38 H 0.07 -0.15 7.96 -2.39 -0.02 -0.16 16 39 H 0.08 -0.20 7.96 -2.39 -0.02 -0.22 16 40 H 0.07 -0.12 7.69 -2.38 -0.02 -0.14 16 41 H 0.07 -0.14 7.69 -2.38 -0.02 -0.16 16 42 H 0.08 -0.21 7.96 -2.39 -0.02 -0.23 16 43 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 44 H 0.13 0.15 7.43 -2.91 -0.02 0.13 16 45 H 0.13 0.29 8.06 -2.91 -0.02 0.27 16 Total: 0.00 -32.30 382.00 7.50 -24.80 By element: Atomic # 1 Polarization: -1.85 SS G_CDS: 0.07 Total: -1.79 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 6.43 Total: 9.59 kcal Atomic # 7 Polarization: -1.58 SS G_CDS: -2.38 Total: -3.96 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.59 Total: -18.73 kcal Atomic # 14 Polarization: -12.70 SS G_CDS: 2.79 Total: -9.91 kcal Total: -32.30 7.50 -24.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838786517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.074 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds