Wall clock time and date at job start Tue Mar 31 2020 12:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81405 * 102.99638 * 2 1 4 4 C 1.53036 * 109.45904 * 175.00153 * 3 2 1 5 5 C 1.53195 * 109.31186 * 181.38771 * 4 3 2 6 6 N 1.46925 * 108.77403 * 305.36125 * 5 4 3 7 7 C 1.34775 * 120.63026 * 233.58806 * 6 5 4 8 8 O 1.21278 * 120.00248 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99826 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47233 * 179.97438 * 9 7 6 11 11 C 1.37639 * 120.13207 * 265.00685 * 10 9 7 12 12 C 1.38610 * 120.24855 * 179.97438 * 11 10 9 13 13 C 1.38657 * 120.50115 * 0.02562 * 12 11 10 14 14 C 1.37594 * 120.25136 * 359.97438 * 13 12 11 15 15 C 1.40704 * 120.12210 * 85.25307 * 10 9 7 16 16 C 1.41391 * 120.24775 * 0.02892 * 15 10 9 17 17 H 1.08005 * 119.99677 * 334.26995 * 16 15 10 18 18 C 1.39944 * 120.00108 * 154.27240 * 16 15 10 19 19 N 1.30818 * 119.99816 * 343.65995 * 18 16 15 20 20 Si 1.86800 * 119.99967 * 163.66543 * 18 16 15 21 21 H 1.48491 * 109.47398 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47083 * 119.99778 * 20 18 16 23 23 H 1.48498 * 109.46937 * 239.99532 * 20 18 16 24 24 C 1.46930 * 118.73900 * 53.86149 * 6 5 4 25 25 C 1.53043 * 109.45903 * 295.06824 * 3 2 1 26 26 H 1.08999 * 109.47280 * 299.99568 * 1 2 3 27 27 H 1.08994 * 109.47479 * 60.00466 * 1 2 3 28 28 H 1.09008 * 109.46682 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.45089 * 55.02864 * 3 2 1 30 30 H 1.08996 * 109.50358 * 61.43406 * 4 3 2 31 31 H 1.09001 * 109.52360 * 301.34777 * 4 3 2 32 32 H 1.09002 * 109.58888 * 185.57600 * 5 4 3 33 33 H 1.09002 * 109.70486 * 65.21738 * 5 4 3 34 34 H 1.09008 * 109.46793 * 59.99921 * 9 7 6 35 35 H 1.08995 * 109.47048 * 299.99947 * 9 7 6 36 36 H 1.07995 * 119.87270 * 359.97078 * 11 10 9 37 37 H 1.07995 * 119.74859 * 180.02562 * 12 11 10 38 38 H 1.08003 * 119.87397 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.13118 * 179.97438 * 14 13 12 40 40 H 0.97001 * 119.99886 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.58382 * 65.92783 * 24 6 5 42 42 H 1.08993 * 109.58922 * 186.35198 * 24 6 5 43 43 H 1.09003 * 109.49798 * 298.56656 * 25 3 2 44 44 H 1.09003 * 109.49860 * 58.63023 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7373 1.9411 0.1257 5 6 4.0751 3.4349 0.1603 6 7 3.4901 4.0795 -1.0234 7 6 4.2543 4.8208 -1.8497 8 8 5.4366 4.9614 -1.6193 9 6 3.6395 5.4751 -3.0602 10 6 4.6993 6.2400 -3.8104 11 6 4.8737 7.5857 -3.5799 12 6 5.8481 8.2915 -4.2682 13 6 6.6570 7.6526 -5.1956 14 6 6.5005 6.3080 -5.4421 15 6 5.5109 5.5823 -4.7530 16 6 5.3370 4.2014 -5.0023 17 1 4.9163 3.5637 -4.2389 18 6 5.7100 3.6611 -6.2382 19 7 5.9137 4.4495 -7.2620 20 14 5.9169 1.8141 -6.4258 21 1 5.6310 1.1497 -5.1290 22 1 4.9742 1.3127 -7.4579 23 1 7.3106 1.5117 -6.8398 24 6 2.0549 3.9055 -1.2858 25 6 1.7409 2.4019 -1.3071 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 1.7296 2.2537 0.8422 30 1 4.2289 1.4766 -0.7290 31 1 4.0830 1.4686 1.0452 32 1 5.1572 3.5652 0.1500 33 1 3.6614 3.8845 1.0630 34 1 2.8534 6.1604 -2.7428 35 1 3.2144 4.7103 -3.7100 36 1 4.2490 8.0936 -2.8601 37 1 5.9783 9.3471 -4.0807 38 1 7.4134 8.2122 -5.7258 39 1 7.1313 5.8123 -6.1651 40 1 6.1719 4.0750 -8.1187 41 1 1.4781 4.3910 -0.4985 42 1 1.8037 4.3464 -2.2504 43 1 2.2513 1.9330 -2.1484 44 1 0.6652 2.2569 -1.4075 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869646040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:16 Heat of formation + Delta-G solvation = -27.214999 kcal Electronic energy + Delta-G solvation = -24854.922007 eV Core-core repulsion = 21476.430454 eV Total energy + Delta-G solvation = -3378.491553 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.85379 -37.76659 -36.73061 -33.59150 -32.92476 -31.90574 -30.97851 -29.42073 -29.08226 -27.06531 -25.33646 -24.70566 -23.25626 -21.23389 -20.89919 -19.84435 -18.55207 -17.13078 -17.02966 -16.16368 -15.66715 -15.40133 -15.04361 -14.63050 -14.43870 -14.33175 -14.21569 -13.85822 -13.55882 -13.54426 -13.13729 -12.84347 -12.69329 -12.53410 -12.43336 -11.70467 -11.68106 -11.53866 -11.35779 -11.16206 -11.04492 -11.00609 -10.93203 -10.74086 -10.63322 -10.35615 -10.05092 -9.45366 -9.32917 -9.14750 -9.11275 -8.38919 -7.88576 -7.28447 -7.25887 -6.71000 -4.31260 1.45992 2.35910 2.79948 2.97254 3.10102 3.16029 3.28935 3.30229 3.40202 3.96725 4.44774 4.47276 4.68698 4.84343 4.86308 4.90771 4.95563 5.18522 5.20551 5.34826 5.41775 5.47472 5.49897 5.64358 5.67410 5.78743 5.92566 5.95288 6.04146 6.13761 6.16294 6.30453 6.43924 6.53667 6.76589 6.84338 7.11814 7.32520 7.45251 7.65514 7.78107 7.96016 8.10373 8.16189 8.34584 8.67888 8.82101 8.94984 9.04676 10.23240 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.012950 B = 0.004270 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.631631 B = 6555.945289 C = 8032.685394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.268 6.268 3 C -0.045 4.045 4 C -0.115 4.115 5 C 0.119 3.881 6 N -0.627 5.627 7 C 0.519 3.481 8 O -0.518 6.518 9 C -0.069 4.069 10 C -0.182 4.182 11 C -0.081 4.081 12 C -0.240 4.240 13 C -0.107 4.107 14 C -0.159 4.159 15 C 0.129 3.871 16 C -0.455 4.455 17 H 0.074 0.926 18 C 0.078 3.922 19 N -0.795 5.795 20 Si 0.900 3.100 21 H -0.260 1.260 22 H -0.275 1.275 23 H -0.272 1.272 24 C 0.114 3.886 25 C -0.132 4.132 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.279 0.721 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.533 -6.033 11.588 17.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.039 6.039 3 C -0.174 4.174 4 C -0.154 4.154 5 C -0.006 4.006 6 N -0.364 5.364 7 C 0.309 3.691 8 O -0.392 6.392 9 C -0.108 4.108 10 C -0.184 4.184 11 C -0.100 4.100 12 C -0.259 4.259 13 C -0.125 4.125 14 C -0.179 4.179 15 C 0.127 3.873 16 C -0.485 4.485 17 H 0.092 0.908 18 C -0.139 4.139 19 N -0.421 5.421 20 Si 0.724 3.276 21 H -0.184 1.184 22 H -0.200 1.200 23 H -0.197 1.197 24 C -0.012 4.012 25 C -0.172 4.172 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.103 0.897 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.155 -6.885 11.462 16.790 hybrid contribution -0.883 0.064 -0.156 0.899 sum -11.038 -6.822 11.305 17.210 Atomic orbital electron populations 1.23376 0.94448 1.06296 1.04865 1.86983 1.07117 1.11929 1.97901 1.23167 1.00418 0.92892 1.00936 1.21766 0.92371 0.97451 1.03826 1.21442 1.00997 0.90463 0.87683 1.48263 1.09009 1.52350 1.26783 1.21275 0.86732 0.77546 0.83560 1.90670 1.15672 1.59865 1.72951 1.20291 0.97821 0.99309 0.93422 1.19057 1.01296 0.92822 1.05178 1.20289 0.97679 0.93876 0.98120 1.20299 1.03103 0.97811 1.04705 1.20672 0.98586 0.95343 0.97936 1.21295 1.00094 0.93178 1.03305 1.17336 0.88341 0.92748 0.88881 1.19494 1.36915 0.93561 0.98536 0.90800 1.25861 0.92599 1.00068 0.95416 1.69826 1.34059 1.37137 1.01062 0.86392 0.78853 0.83027 0.79299 1.18411 1.20021 1.19700 1.21754 0.81650 0.95159 1.02588 1.22367 1.01362 0.96194 0.97290 0.90681 0.90323 0.88310 0.89487 0.90279 0.90120 0.88437 0.92034 0.90734 0.88593 0.89827 0.89692 0.89606 0.86557 0.91046 0.91765 0.88717 0.89692 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.45 101.05 1.06 0.17 16 2 S -0.27 -2.87 21.79 -107.50 -2.34 -5.21 16 3 C -0.05 -0.46 2.61 -26.69 -0.07 -0.53 16 4 C -0.11 -1.33 5.37 -26.61 -0.14 -1.47 16 5 C 0.12 1.55 6.43 -3.71 -0.02 1.52 16 6 N -0.63 -9.28 2.97 -172.50 -0.51 -9.79 16 7 C 0.52 10.15 7.35 -10.98 -0.08 10.07 16 8 O -0.52 -12.43 15.45 5.56 0.09 -12.34 16 9 C -0.07 -1.34 3.53 -29.03 -0.10 -1.44 16 10 C -0.18 -4.38 4.43 -103.91 -0.46 -4.84 16 11 C -0.08 -1.89 9.66 -39.66 -0.38 -2.27 16 12 C -0.24 -5.63 10.05 -39.29 -0.39 -6.03 16 13 C -0.11 -2.63 10.02 -39.66 -0.40 -3.03 16 14 C -0.16 -4.30 8.68 -38.87 -0.34 -4.63 16 15 C 0.13 3.47 5.56 -106.82 -0.59 2.88 16 16 C -0.46 -12.03 8.15 -37.74 -0.31 -12.34 16 17 H 0.07 1.92 6.68 -52.48 -0.35 1.57 16 18 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 19 N -0.80 -20.62 10.97 55.55 0.61 -20.01 16 20 Si 0.90 19.12 29.59 -169.99 -5.03 14.09 16 21 H -0.26 -5.57 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 C 0.11 1.26 6.37 -3.48 -0.02 1.23 16 25 C -0.13 -1.35 5.30 -26.38 -0.14 -1.49 16 26 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.08 0.53 7.10 -51.93 -0.37 0.16 16 28 H 0.10 0.64 8.14 -51.92 -0.42 0.21 16 29 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.10 1.49 7.01 -51.93 -0.36 1.13 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.21 7.84 -51.92 -0.41 0.81 16 35 H 0.10 1.85 6.61 -51.93 -0.34 1.50 16 36 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 39 H 0.12 3.22 6.22 -52.49 -0.33 2.90 16 40 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.07 0.60 6.86 -51.93 -0.36 0.24 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -30.98 363.05 -10.82 -41.80 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.61 Total: 6.33 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -2.49 Total: -20.33 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.10 Total: -29.81 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -2.34 Total: -5.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.98 -10.82 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869646040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.583 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds