Wall clock time and date at job start Tue Mar 31 2020 12:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 117.00537 * 2 1 4 4 O 1.20829 * 119.99494 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00437 * 179.97438 * 3 2 1 6 6 H 1.09002 * 115.55124 * 325.66792 * 5 3 2 7 7 C 1.52998 * 117.50113 * 179.97438 * 5 3 2 8 8 H 1.09003 * 117.49649 * 144.99860 * 7 5 3 9 9 C 1.52996 * 117.49938 * 359.97438 * 7 5 3 10 10 N 1.46498 * 109.47059 * 174.99865 * 9 7 5 11 11 C 1.34783 * 119.99907 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99731 * 0.02562 * 11 10 9 13 13 C 1.50702 * 120.00007 * 180.02562 * 11 10 9 14 14 C 1.53003 * 109.46878 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.46838 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47119 * 180.02562 * 15 14 13 17 17 C 1.50702 * 109.47159 * 180.02562 * 16 15 14 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 16 15 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 16 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 16 22 22 H 1.48501 * 109.47188 * 90.00793 * 21 19 17 23 23 H 1.48501 * 109.47085 * 210.00372 * 21 19 17 24 24 H 1.48498 * 109.47634 * 330.00608 * 21 19 17 25 25 C 1.52999 * 117.50104 * 111.37074 * 5 3 2 26 26 F 1.39896 * 117.49897 * 0.02562 * 25 5 3 27 27 F 1.39899 * 117.50250 * 214.98030 * 25 5 3 28 28 H 1.09003 * 109.47165 * 59.99887 * 1 2 3 29 29 H 1.08991 * 109.47496 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47212 * 300.00680 * 1 2 3 31 31 H 1.09004 * 109.47066 * 55.00133 * 9 7 5 32 32 H 1.09000 * 109.47234 * 295.00641 * 9 7 5 33 33 H 0.97000 * 120.00381 * 0.02562 * 10 9 7 34 34 H 1.08998 * 109.46799 * 60.00721 * 13 11 10 35 35 H 1.09002 * 109.46835 * 300.00164 * 13 11 10 36 36 H 1.08998 * 109.46943 * 60.00655 * 14 13 11 37 37 H 1.08994 * 109.47116 * 300.00266 * 14 13 11 38 38 H 1.09004 * 109.46806 * 60.00265 * 15 14 13 39 39 H 1.09000 * 109.47828 * 300.00570 * 15 14 13 40 40 H 1.09004 * 109.47066 * 60.00422 * 16 15 14 41 41 H 1.08994 * 109.47405 * 300.00252 * 16 15 14 42 42 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 4.0781 0.4885 0.5556 7 6 4.2009 2.6669 -0.0001 8 1 5.1300 2.7968 0.5549 9 6 3.2590 3.8726 -0.0018 10 7 4.0425 5.1046 0.1182 11 6 3.4201 6.2999 0.1376 12 8 2.2112 6.3555 0.0562 13 6 4.2261 7.5673 0.2605 14 6 3.2841 8.7730 0.2589 15 6 4.1024 10.0596 0.3843 16 6 3.1604 11.2652 0.3832 17 6 3.9665 12.5326 0.5061 18 1 5.0430 12.4832 0.5774 19 6 3.3300 13.7557 0.5213 20 7 2.0192 13.8159 0.4342 21 14 4.3297 15.3269 0.6659 22 1 4.6905 15.8107 -0.6909 23 1 3.5258 16.3627 1.3631 24 1 5.5676 15.0567 1.4404 25 6 4.2465 1.8053 -1.2630 26 9 3.4237 2.1806 -2.3304 27 9 5.4778 1.2441 -1.6181 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 2.5701 3.7967 0.8395 32 1 2.6937 3.8907 -0.9336 33 1 5.0093 5.0602 0.1829 34 1 4.9149 7.6428 -0.5809 35 1 4.7913 7.5495 1.1924 36 1 2.5956 8.6973 1.1005 37 1 2.7186 8.7909 -0.6727 38 1 4.7912 10.1355 -0.4571 39 1 4.6677 10.0414 1.3160 40 1 2.4719 11.1891 1.2249 41 1 2.5949 11.2837 -0.5483 42 1 1.5714 14.6763 0.4452 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881825329.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:20 Heat of formation + Delta-G solvation = -229.642040 kcal Electronic energy + Delta-G solvation = -26009.755611 eV Core-core repulsion = 21625.503762 eV Total energy + Delta-G solvation = -4384.251849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.98980 -48.65432 -41.88519 -40.76327 -38.65204 -37.23391 -36.61939 -35.25702 -34.59244 -31.63410 -29.57267 -28.55479 -26.96023 -25.49503 -24.07121 -22.73694 -21.99010 -21.71074 -21.09027 -19.58575 -18.69943 -18.42006 -18.36644 -17.89578 -17.53479 -17.27559 -16.99293 -16.85897 -16.51342 -16.37946 -15.72893 -15.24497 -15.01384 -14.87367 -14.76626 -14.58735 -14.50565 -14.36306 -14.21946 -13.65723 -13.57720 -13.44958 -13.23411 -13.05897 -12.80706 -12.45537 -12.32191 -12.14461 -12.10841 -11.92876 -11.77373 -11.36229 -11.34538 -11.23430 -11.15658 -10.77403 -10.54485 -10.14372 -8.17967 -6.30232 0.54287 1.30126 1.40732 1.43313 1.54389 1.63351 1.70928 1.90108 2.05218 2.42569 2.89576 3.10079 3.14580 3.24042 3.58376 3.81899 3.90093 4.08913 4.17035 4.22276 4.23028 4.26828 4.33353 4.52090 4.65838 4.67573 4.72099 4.86258 4.86876 4.91928 5.19056 5.21032 5.33586 5.35269 5.42999 5.58650 5.79352 5.89101 6.25931 6.44947 6.54861 6.88493 7.29090 7.39286 8.94344 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.026159 B = 0.001887 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.137917 B =14833.091696 C =15548.543238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.481 3.519 4 O -0.513 6.513 5 C -0.143 4.143 6 H 0.212 0.788 7 C -0.108 4.108 8 H 0.202 0.798 9 C 0.148 3.852 10 N -0.717 5.717 11 C 0.509 3.491 12 O -0.589 6.589 13 C -0.125 4.125 14 C -0.098 4.098 15 C -0.095 4.095 16 C 0.017 3.983 17 C -0.540 4.540 18 H 0.068 0.932 19 C -0.010 4.010 20 N -0.939 5.939 21 Si 0.971 3.029 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.258 1.258 25 C 0.221 3.779 26 F -0.168 7.168 27 F -0.142 7.142 28 H 0.058 0.942 29 H 0.138 0.862 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.422 0.578 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.042 0.958 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.063 0.937 40 H -0.016 1.016 41 H -0.017 1.017 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.799 -35.644 0.674 36.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.324 3.676 4 O -0.402 6.402 5 C -0.163 4.163 6 H 0.228 0.772 7 C -0.127 4.127 8 H 0.219 0.781 9 C 0.025 3.975 10 N -0.372 5.372 11 C 0.297 3.703 12 O -0.469 6.469 13 C -0.165 4.165 14 C -0.136 4.136 15 C -0.132 4.132 16 C -0.020 4.020 17 C -0.578 4.578 18 H 0.086 0.914 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.795 3.205 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.182 1.182 25 C 0.184 3.816 26 F -0.148 7.148 27 F -0.122 7.122 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.261 0.739 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.002 0.998 41 H 0.001 0.999 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.573 -35.241 0.556 36.050 hybrid contribution -0.334 0.952 -0.412 1.090 sum 7.239 -34.289 0.145 35.045 Atomic orbital electron populations 1.23622 0.74096 1.06106 1.02644 1.86449 1.25289 1.31765 1.83276 1.22643 0.90639 0.81807 0.72545 1.90822 1.67478 1.36858 1.45001 1.23529 0.89500 1.02655 1.00632 0.77160 1.24122 1.03334 0.89805 0.95435 0.78094 1.20830 0.92330 0.81404 1.02956 1.45867 1.11578 1.04600 1.75198 1.21303 0.88132 0.86294 0.74523 1.90728 1.17245 1.88002 1.50905 1.21677 0.98594 0.89222 1.06979 1.21262 0.97696 0.93852 1.00838 1.21443 0.97717 0.92646 1.01428 1.19075 0.94854 0.93860 0.94234 1.21764 0.94110 0.92245 1.49700 0.91415 1.26135 0.96076 1.03552 0.94901 1.70144 1.09812 1.26158 1.51814 0.85353 0.78634 0.77938 0.78535 1.19765 1.20999 1.18172 1.19893 0.79264 1.02115 0.80286 1.93056 1.71382 1.91455 1.58928 1.93110 1.40560 1.85412 1.93097 0.92354 0.84435 0.91611 0.90283 0.92733 0.73946 0.86105 0.85685 0.93952 0.94224 0.91976 0.91784 0.99757 0.99908 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -4.88 10.56 -51.38 -0.54 -5.43 16 3 C 0.48 7.85 7.35 71.23 0.52 8.37 16 4 O -0.51 -12.41 12.86 21.95 0.28 -12.13 16 5 C -0.14 -1.24 6.29 -11.54 -0.07 -1.31 16 6 H 0.21 -0.05 8.14 -2.39 -0.02 -0.07 16 7 C -0.11 -0.97 5.83 -10.81 -0.06 -1.03 16 8 H 0.20 -0.09 8.04 -2.39 -0.02 -0.11 16 9 C 0.15 2.90 4.20 86.38 0.36 3.26 16 10 N -0.72 -12.81 5.56 -463.05 -2.57 -15.39 16 11 C 0.51 14.18 7.83 87.66 0.69 14.86 16 12 O -0.59 -23.56 15.98 -3.04 -0.05 -23.61 16 13 C -0.13 -3.05 5.70 29.85 0.17 -2.88 16 14 C -0.10 -3.63 4.50 30.59 0.14 -3.49 16 15 C -0.09 -3.91 5.15 30.59 0.16 -3.75 16 16 C 0.02 0.94 4.97 29.85 0.15 1.09 16 17 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 18 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 19 C -0.01 -0.58 5.46 84.66 0.46 -0.11 16 20 N -0.94 -59.88 13.29 21.45 0.28 -59.60 16 21 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 25 C 0.22 2.76 5.13 30.58 0.16 2.92 16 26 F -0.17 -3.43 16.00 44.97 0.72 -2.71 16 27 F -0.14 -1.63 17.60 44.97 0.79 -0.84 16 28 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 29 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.73 8.13 -2.38 -0.02 0.71 16 31 H 0.08 1.89 6.92 -2.38 -0.02 1.88 16 32 H 0.05 1.46 6.48 -2.39 -0.02 1.45 16 33 H 0.42 3.52 8.40 -92.71 -0.78 2.74 16 34 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 37 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 38 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.06 2.42 8.14 -2.39 -0.02 2.41 16 40 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 41 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 42 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -87.23 368.29 5.31 -81.92 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 0.26 Total: 2.52 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 4.10 Total: -11.98 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -2.29 Total: -74.99 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -0.31 Total: -41.16 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 1.51 Total: -3.55 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -87.23 5.31 -81.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881825329.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.719 kcal (2) G-P(sol) polarization free energy of solvation -87.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds