Wall clock time and date at job start Tue Mar 31 2020 12:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99937 * 2 1 4 4 C 1.52998 * 109.47055 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46875 * 65.00112 * 4 3 2 6 6 C 1.46499 * 120.00046 * 269.99454 * 5 4 3 7 7 C 1.50692 * 109.47204 * 270.00425 * 6 5 4 8 8 H 1.07997 * 120.00442 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99884 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99600 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00008 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47325 * 60.00044 * 11 9 7 13 13 H 1.48500 * 109.47012 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47336 * 299.99827 * 11 9 7 15 15 C 1.34775 * 119.99633 * 90.00325 * 5 4 3 16 16 O 1.21596 * 120.00483 * 359.97438 * 15 5 4 17 17 N 1.34777 * 119.99604 * 180.27290 * 15 5 4 18 18 C 1.40390 * 119.99852 * 174.97464 * 17 15 5 19 19 C 1.40691 * 120.40544 * 34.98152 * 18 17 15 20 20 N 1.31182 * 120.31514 * 179.97438 * 19 18 17 21 21 C 1.34059 * 121.04265 * 0.02562 * 20 19 18 22 22 N 1.32625 * 131.84097 * 179.97438 * 21 20 19 23 23 C 1.33591 * 109.24106 * 179.97438 * 22 21 20 24 24 C 1.35046 * 108.61630 * 359.97438 * 23 22 21 25 25 N 1.36814 * 107.09825 * 0.02562 * 24 23 22 26 26 C 1.36088 * 120.41035 * 214.69788 * 18 17 15 27 27 H 1.08991 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47007 * 300.00218 * 1 2 3 29 29 H 1.08999 * 109.46786 * 59.99799 * 1 2 3 30 30 H 1.09005 * 109.47148 * 59.99883 * 3 2 1 31 31 H 1.08998 * 109.47362 * 300.00097 * 3 2 1 32 32 H 1.09002 * 109.47337 * 304.99875 * 4 3 2 33 33 H 1.09004 * 109.46895 * 184.99865 * 4 3 2 34 34 H 1.09000 * 109.46643 * 30.00506 * 6 5 4 35 35 H 1.09002 * 109.46443 * 150.00144 * 6 5 4 36 36 H 0.97005 * 119.99428 * 179.97438 * 10 9 7 37 37 H 0.96996 * 120.00310 * 354.97808 * 17 15 5 38 38 H 1.07991 * 119.84045 * 359.95120 * 19 18 17 39 39 H 1.08000 * 125.69261 * 179.97438 * 23 22 21 40 40 H 1.07993 * 126.45080 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.49605 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3403 7 6 5.5017 -1.2980 -0.9413 8 1 6.2201 -0.5461 -0.6497 9 6 5.8611 -2.6292 -0.9473 10 7 4.9858 -3.5449 -1.3009 11 14 7.5910 -3.1318 -0.4533 12 1 7.8539 -2.6956 0.9416 13 1 7.7223 -4.6082 -0.5438 14 1 8.5722 -2.4912 -1.3656 15 6 4.2633 1.3330 -2.3200 16 8 4.1554 2.5419 -2.2459 17 7 4.6639 0.7617 -3.4730 18 6 4.8608 1.5518 -4.6166 19 6 5.3642 2.8604 -4.4999 20 7 5.5480 3.5970 -5.5697 21 6 5.2625 3.1250 -6.7915 22 7 5.3618 3.6706 -7.9962 23 6 4.9501 2.7908 -8.9133 24 6 4.5784 1.6548 -8.2846 25 7 4.7713 1.8549 -6.9450 26 6 4.5726 1.0595 -5.8521 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8465 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5686 0.8427 33 1 3.9784 2.1766 0.0902 34 1 3.3858 -1.3631 -0.6714 35 1 3.9139 -1.2121 -2.3645 36 1 5.2388 -4.4814 -1.3055 37 1 4.8161 -0.1955 -3.5128 38 1 5.6001 3.2605 -3.5249 39 1 4.9195 2.9598 -9.9795 40 1 4.2002 0.7574 -8.7514 41 1 4.1891 0.0564 -5.9666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889001114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:28 Heat of formation + Delta-G solvation = 50.792836 kcal Electronic energy + Delta-G solvation = -26758.377724 eV Core-core repulsion = 22869.268381 eV Total energy + Delta-G solvation = -3889.109343 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.90179 -40.25722 -38.24027 -37.44577 -35.20630 -34.94140 -34.07745 -32.76591 -30.36171 -29.16129 -28.84035 -27.19370 -25.98411 -24.73708 -23.62291 -23.06420 -22.29850 -21.64735 -19.95623 -18.49982 -17.88929 -17.29584 -16.74908 -16.34863 -16.22188 -16.07728 -15.80844 -15.39974 -15.07797 -14.67487 -14.38676 -14.28888 -14.06187 -13.83167 -13.37692 -13.35590 -12.66002 -12.35557 -12.19377 -12.00806 -11.82234 -11.61582 -11.58744 -11.10192 -10.97508 -10.70109 -10.58736 -10.33342 -10.21482 -9.91906 -9.80168 -9.69286 -9.42521 -8.67612 -8.41036 -8.08198 -7.80092 -6.29883 -4.39054 0.58040 1.12172 2.30191 2.74484 3.03904 3.16799 3.22699 3.25479 3.46193 3.71214 3.76747 4.05810 4.14152 4.28908 4.41787 4.59030 4.83957 5.03419 5.16205 5.25053 5.30989 5.39259 5.42841 5.54965 5.57197 5.60347 5.77920 5.83215 5.91006 6.16480 6.25645 6.32978 6.54778 6.58191 6.78640 7.00560 7.11262 7.37536 7.54612 7.60128 7.65774 7.91414 8.00787 8.28037 8.68171 8.90855 9.30202 10.76018 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.004190 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.240119 B = 6681.643559 C = 8292.887827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.376 6.376 3 C 0.045 3.955 4 C 0.139 3.861 5 N -0.594 5.594 6 C 0.240 3.760 7 C -0.548 4.548 8 H 0.062 0.938 9 C 0.068 3.932 10 N -0.888 5.888 11 Si 0.897 3.103 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.710 3.290 16 O -0.606 6.606 17 N -0.670 5.670 18 C 0.120 3.880 19 C 0.190 3.810 20 N -0.429 5.429 21 C 0.363 3.637 22 N -0.478 5.478 23 C 0.040 3.960 24 C -0.101 4.101 25 N -0.378 5.378 26 C 0.042 3.958 27 H 0.083 0.917 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.026 0.974 36 H 0.267 0.733 37 H 0.425 0.575 38 H 0.200 0.800 39 H 0.185 0.815 40 H 0.184 0.816 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.712 4.560 -5.175 8.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.033 4.033 4 C 0.014 3.986 5 N -0.326 5.326 6 C 0.120 3.880 7 C -0.586 4.586 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.525 5.525 11 Si 0.724 3.276 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.412 3.588 16 O -0.487 6.487 17 N -0.321 5.321 18 C 0.018 3.982 19 C 0.000 4.000 20 N -0.140 5.140 21 C 0.015 3.985 22 N -0.201 5.201 23 C -0.114 4.114 24 C -0.233 4.233 25 N -0.054 5.054 26 C -0.093 4.093 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.267 0.733 38 H 0.216 0.784 39 H 0.202 0.798 40 H 0.201 0.799 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.152 6.619 -5.349 9.948 hybrid contribution 0.084 -2.611 0.338 2.634 sum -5.068 4.008 -5.011 8.177 Atomic orbital electron populations 1.22679 0.82099 1.02400 0.99213 1.88047 1.18715 1.27457 1.95228 1.23067 0.95255 0.84962 0.99968 1.21308 0.90971 0.99642 0.86632 1.47362 1.66327 1.09352 1.09550 1.19457 0.97795 0.72677 0.98089 1.21514 0.97185 0.92547 1.47397 0.91987 1.24936 0.97627 0.96309 0.94725 1.69920 1.34420 1.01357 1.46820 0.86570 0.84154 0.77426 0.79421 1.20014 1.21143 1.20146 1.15761 0.77839 0.84925 0.80275 1.90824 1.61999 1.12355 1.83520 1.42718 1.70118 1.12130 1.07109 1.17825 1.00166 0.93850 0.86385 1.23920 0.89499 0.88885 0.97698 1.68034 1.17851 1.33307 0.94842 1.22104 1.02074 0.80618 0.93729 1.70705 1.24121 1.29823 0.95443 1.22527 0.99974 0.89355 0.99578 1.22577 1.16259 1.04115 0.80394 1.43681 1.40931 1.13968 1.06836 1.21548 1.04424 0.99063 0.84313 0.89871 0.94638 0.94693 0.92980 0.93308 0.89069 0.89010 0.92505 0.95616 0.92363 0.73317 0.78383 0.79801 0.79925 0.80656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.15 9.53 -35.23 -0.34 -6.49 16 3 C 0.05 0.67 6.28 37.16 0.23 0.90 16 4 C 0.14 2.27 5.81 -4.04 -0.02 2.24 16 5 N -0.59 -11.16 2.42 -180.80 -0.44 -11.59 16 6 C 0.24 5.16 4.71 -5.20 -0.02 5.13 16 7 C -0.55 -13.06 9.39 -34.44 -0.32 -13.38 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -22.91 13.29 55.43 0.74 -22.17 16 11 Si 0.90 19.49 29.54 -169.99 -5.02 14.47 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 C 0.71 13.09 8.14 -86.92 -0.71 12.38 16 16 O -0.61 -11.76 13.38 5.28 0.07 -11.69 16 17 N -0.67 -11.00 5.19 -14.31 -0.07 -11.08 16 18 C 0.12 1.86 6.28 -83.78 -0.53 1.33 16 19 C 0.19 3.13 9.94 -16.90 -0.17 2.96 16 20 N -0.43 -7.66 10.47 -13.59 -0.14 -7.80 16 21 C 0.36 6.32 8.92 -322.55 -2.88 3.44 16 22 N -0.48 -8.10 11.32 -14.46 -0.16 -8.26 16 23 C 0.04 0.49 11.83 -17.92 -0.21 0.28 16 24 C -0.10 -1.17 11.77 -16.46 -0.19 -1.37 16 25 N -0.38 -5.48 2.95 -64.23 -0.19 -5.67 16 26 C 0.04 0.57 10.99 -16.19 -0.18 0.39 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.51 8.07 -51.93 -0.42 1.09 16 33 H 0.09 1.41 7.42 -51.93 -0.39 1.03 16 34 H 0.06 1.35 7.11 -51.93 -0.37 0.98 16 35 H 0.03 0.56 6.43 -51.93 -0.33 0.23 16 36 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 37 H 0.43 7.00 6.62 -40.82 -0.27 6.73 16 38 H 0.20 3.28 6.27 -52.49 -0.33 2.95 16 39 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 352.85 15.07 5.32 5.32 Total: -1.00 -30.43 352.85 -9.26 -39.69 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.03 Total: 7.85 kcal Atomic # 6 Polarization: 21.40 SS G_CDS: -3.98 Total: 17.42 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -0.27 Total: -66.57 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.26 Total: -18.17 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.43 -9.26 -39.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889001114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.481 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds