Wall clock time and date at job start Tue Mar 31 2020 12:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99937 * 2 1 4 4 C 1.52998 * 109.47055 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46875 * 65.00112 * 4 3 2 6 6 C 1.46499 * 120.00046 * 269.99454 * 5 4 3 7 7 C 1.50692 * 109.47204 * 270.00425 * 6 5 4 8 8 H 1.07997 * 120.00442 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99884 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99600 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00008 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47325 * 60.00044 * 11 9 7 13 13 H 1.48500 * 109.47012 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47336 * 299.99827 * 11 9 7 15 15 C 1.34775 * 119.99633 * 90.00325 * 5 4 3 16 16 O 1.21596 * 120.00483 * 359.97438 * 15 5 4 17 17 N 1.34777 * 119.99604 * 180.27290 * 15 5 4 18 18 C 1.40390 * 119.99852 * 174.97464 * 17 15 5 19 19 C 1.40691 * 120.40544 * 34.98152 * 18 17 15 20 20 N 1.31182 * 120.31514 * 179.97438 * 19 18 17 21 21 C 1.34059 * 121.04265 * 0.02562 * 20 19 18 22 22 N 1.32625 * 131.84097 * 179.97438 * 21 20 19 23 23 C 1.33591 * 109.24106 * 179.97438 * 22 21 20 24 24 C 1.35046 * 108.61630 * 359.97438 * 23 22 21 25 25 N 1.36814 * 107.09825 * 0.02562 * 24 23 22 26 26 C 1.36088 * 120.41035 * 214.69788 * 18 17 15 27 27 H 1.08991 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47007 * 300.00218 * 1 2 3 29 29 H 1.08999 * 109.46786 * 59.99799 * 1 2 3 30 30 H 1.09005 * 109.47148 * 59.99883 * 3 2 1 31 31 H 1.08998 * 109.47362 * 300.00097 * 3 2 1 32 32 H 1.09002 * 109.47337 * 304.99875 * 4 3 2 33 33 H 1.09004 * 109.46895 * 184.99865 * 4 3 2 34 34 H 1.09000 * 109.46643 * 30.00506 * 6 5 4 35 35 H 1.09002 * 109.46443 * 150.00144 * 6 5 4 36 36 H 0.97005 * 119.99428 * 179.97438 * 10 9 7 37 37 H 0.96996 * 120.00310 * 354.97808 * 17 15 5 38 38 H 1.07991 * 119.84045 * 359.95120 * 19 18 17 39 39 H 1.08000 * 125.69261 * 179.97438 * 23 22 21 40 40 H 1.07993 * 126.45080 * 180.02562 * 24 23 22 41 41 H 1.08001 * 120.49605 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3403 7 6 5.5017 -1.2980 -0.9413 8 1 6.2201 -0.5461 -0.6497 9 6 5.8611 -2.6292 -0.9473 10 7 4.9858 -3.5449 -1.3009 11 14 7.5910 -3.1318 -0.4533 12 1 7.8539 -2.6956 0.9416 13 1 7.7223 -4.6082 -0.5438 14 1 8.5722 -2.4912 -1.3656 15 6 4.2633 1.3330 -2.3200 16 8 4.1554 2.5419 -2.2459 17 7 4.6639 0.7617 -3.4730 18 6 4.8608 1.5518 -4.6166 19 6 5.3642 2.8604 -4.4999 20 7 5.5480 3.5970 -5.5697 21 6 5.2625 3.1250 -6.7915 22 7 5.3618 3.6706 -7.9962 23 6 4.9501 2.7908 -8.9133 24 6 4.5784 1.6548 -8.2846 25 7 4.7713 1.8549 -6.9450 26 6 4.5726 1.0595 -5.8521 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8465 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8508 0.5686 0.8427 33 1 3.9784 2.1766 0.0902 34 1 3.3858 -1.3631 -0.6714 35 1 3.9139 -1.2121 -2.3645 36 1 5.2388 -4.4814 -1.3055 37 1 4.8161 -0.1955 -3.5128 38 1 5.6001 3.2605 -3.5249 39 1 4.9195 2.9598 -9.9795 40 1 4.2002 0.7574 -8.7514 41 1 4.1891 0.0564 -5.9666 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889001114.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:27 Heat of formation + Delta-G solvation = 33.592178 kcal Electronic energy + Delta-G solvation = -26759.123600 eV Core-core repulsion = 22869.268381 eV Total energy + Delta-G solvation = -3889.855219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.01279 -41.62583 -39.44896 -38.63061 -36.71084 -36.21758 -35.27619 -34.56465 -31.63482 -30.26774 -30.12565 -28.78213 -27.08524 -25.87840 -25.02993 -24.62359 -23.52399 -22.69259 -21.27332 -19.77858 -19.13126 -18.74782 -18.37887 -17.63792 -17.37672 -17.29302 -17.02095 -16.51996 -16.48354 -16.32106 -15.66804 -15.50614 -15.07367 -14.89360 -14.70039 -14.56041 -14.28716 -13.67101 -13.60163 -13.37210 -13.15556 -12.98357 -12.76054 -12.73290 -12.59922 -12.14366 -11.90730 -11.78559 -11.68806 -11.45800 -11.22139 -10.90975 -10.60144 -10.51528 -9.70200 -9.33123 -9.06948 -8.17410 -6.32035 -0.55330 -0.04349 1.16598 1.44313 1.47100 1.52748 1.70282 1.81274 2.09674 2.41392 2.51141 2.61003 2.85459 2.97892 3.13572 3.35147 3.42358 3.85463 4.01382 4.19423 4.25795 4.36900 4.42432 4.46911 4.55147 4.57772 4.64094 4.70524 4.86262 4.91942 4.98587 5.04766 5.17815 5.32759 5.53797 5.56758 5.64292 5.76556 6.02128 6.08434 6.33720 6.45757 6.68012 6.88936 6.92956 7.38305 7.49030 8.86803 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.004190 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.240119 B = 6681.643559 C = 8292.887827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.053 3.947 4 C 0.133 3.867 5 N -0.598 5.598 6 C 0.259 3.741 7 C -0.550 4.550 8 H 0.054 0.946 9 C 0.029 3.971 10 N -0.914 5.914 11 Si 0.950 3.050 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.707 3.293 16 O -0.618 6.618 17 N -0.663 5.663 18 C 0.098 3.902 19 C 0.181 3.819 20 N -0.457 5.457 21 C 0.326 3.674 22 N -0.513 5.513 23 C 0.032 3.968 24 C -0.080 4.080 25 N -0.383 5.383 26 C 0.069 3.931 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.033 0.967 35 H 0.024 0.976 36 H 0.267 0.733 37 H 0.425 0.575 38 H 0.189 0.811 39 H 0.224 0.776 40 H 0.232 0.768 41 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.253 3.699 -6.587 9.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.024 4.024 4 C 0.009 3.991 5 N -0.330 5.330 6 C 0.138 3.862 7 C -0.589 4.589 8 H 0.072 0.928 9 C -0.172 4.172 10 N -0.553 5.553 11 Si 0.776 3.224 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.409 3.591 16 O -0.500 6.500 17 N -0.314 5.314 18 C -0.003 4.003 19 C -0.007 4.007 20 N -0.169 5.169 21 C -0.022 4.022 22 N -0.237 5.237 23 C -0.120 4.120 24 C -0.211 4.211 25 N -0.060 5.060 26 C -0.067 4.067 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.051 0.949 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.267 0.733 38 H 0.206 0.794 39 H 0.240 0.760 40 H 0.248 0.752 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -5.694 5.783 -6.775 10.572 hybrid contribution 0.202 -2.311 0.619 2.401 sum -5.493 3.472 -6.157 8.952 Atomic orbital electron populations 1.22852 0.80174 1.03270 1.00496 1.87998 1.20955 1.28313 1.95476 1.22985 0.93855 0.84715 1.00894 1.21466 0.92495 0.99608 0.85481 1.47319 1.66823 1.08341 1.10550 1.19024 0.95895 0.74124 0.97145 1.21706 0.97998 0.92414 1.46734 0.92780 1.25527 1.00385 0.96437 0.94866 1.70000 1.35789 1.01521 1.47959 0.85735 0.80751 0.76990 0.78905 1.20087 1.20995 1.19923 1.15846 0.77810 0.84766 0.80631 1.90814 1.62621 1.12801 1.83805 1.42516 1.69977 1.11967 1.06968 1.17764 1.02090 0.93600 0.86884 1.23724 0.90228 0.89640 0.97156 1.67911 1.18990 1.34420 0.95601 1.22167 1.04163 0.82163 0.93672 1.70662 1.25064 1.31740 0.96192 1.23329 0.98961 0.88861 1.00873 1.23481 1.13559 1.05216 0.78884 1.43877 1.40711 1.13292 1.08090 1.21984 1.01648 0.99763 0.83301 0.89304 0.92529 0.94158 0.90027 0.94187 0.89704 0.88257 0.94859 0.95778 0.92381 0.73344 0.79447 0.75954 0.75190 0.76937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.41 -13.18 9.53 -148.98 -1.42 -14.60 16 3 C 0.05 1.53 6.28 71.98 0.45 1.99 16 4 C 0.13 4.36 5.81 86.38 0.50 4.86 16 5 N -0.60 -22.67 2.42 -844.19 -2.04 -24.71 16 6 C 0.26 11.25 4.71 85.63 0.40 11.66 16 7 C -0.55 -26.27 9.39 25.60 0.24 -26.03 16 8 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 9 C 0.03 1.42 5.46 84.66 0.46 1.89 16 10 N -0.91 -47.04 13.29 21.45 0.28 -46.75 16 11 Si 0.95 39.66 29.54 68.60 2.03 41.68 16 12 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 14 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 15 C 0.71 26.31 8.14 179.05 1.46 27.77 16 16 O -0.62 -24.39 13.38 -4.02 -0.05 -24.45 16 17 N -0.66 -21.68 5.19 -317.46 -1.65 -23.33 16 18 C 0.10 2.99 6.28 37.87 0.24 3.23 16 19 C 0.18 6.17 9.94 85.39 0.85 7.01 16 20 N -0.46 -16.78 10.47 -196.90 -2.06 -18.84 16 21 C 0.33 11.22 8.92 261.40 2.33 13.55 16 22 N -0.51 -16.89 11.32 -199.66 -2.26 -19.15 16 23 C 0.03 0.70 11.83 83.69 0.99 1.69 16 24 C -0.08 -1.54 11.77 83.18 0.98 -0.56 16 25 N -0.38 -10.25 2.95 -357.11 -1.05 -11.30 16 26 C 0.07 1.70 10.99 83.45 0.92 2.61 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 2.85 8.07 -2.39 -0.02 2.83 16 33 H 0.10 3.06 7.42 -2.38 -0.02 3.05 16 34 H 0.03 1.62 7.11 -2.39 -0.02 1.60 16 35 H 0.02 1.06 6.43 -2.39 -0.02 1.05 16 36 H 0.27 13.19 8.31 -92.70 -0.77 12.42 16 37 H 0.43 13.81 6.62 -92.71 -0.61 13.20 16 38 H 0.19 6.58 6.27 -2.92 -0.02 6.57 16 39 H 0.22 2.80 8.06 -2.91 -0.02 2.77 16 40 H 0.23 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.21 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -66.98 352.85 3.30 -63.68 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.46 Total: 26.20 kcal Atomic # 6 Polarization: 40.51 SS G_CDS: 11.07 Total: 51.58 kcal Atomic # 7 Polarization: -135.31 SS G_CDS: -8.78 Total: -144.09 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.47 Total: -39.05 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.68 kcal Total: -66.98 3.30 -63.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889001114.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.272 kcal (2) G-P(sol) polarization free energy of solvation -66.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds