Wall clock time and date at job start Tue Mar 31 2020 12:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50705 * 119.99628 * 2 1 4 4 N 1.46497 * 109.46934 * 125.00065 * 3 2 1 5 5 C 1.46509 * 120.00151 * 269.99896 * 4 3 2 6 6 C 1.50701 * 109.47180 * 270.00236 * 5 4 3 7 7 H 1.08005 * 119.99839 * 359.97438 * 6 5 4 8 8 C 1.37866 * 119.99933 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00389 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00056 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46933 * 59.99927 * 10 8 6 12 12 H 1.48494 * 109.47000 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47105 * 299.99962 * 10 8 6 14 14 C 1.34782 * 120.00223 * 90.00191 * 4 3 2 15 15 O 1.21274 * 119.99981 * 180.02562 * 14 4 3 16 16 C 1.50698 * 119.99648 * 359.97438 * 14 4 3 17 17 C 1.50698 * 109.47145 * 180.02562 * 16 14 4 18 18 C 1.38108 * 120.04224 * 265.02364 * 17 16 14 19 19 C 1.38280 * 120.07955 * 179.97438 * 18 17 16 20 20 C 1.38316 * 120.16146 * 0.02562 * 19 18 17 21 21 C 1.38065 * 120.08242 * 359.97438 * 20 19 18 22 22 C 1.38955 * 120.03918 * 85.00233 * 17 16 14 23 23 S 1.76197 * 120.07807 * 0.02562 * 22 17 16 24 24 C 1.81408 * 102.99664 * 180.02562 * 23 22 17 25 25 C 1.53004 * 109.46878 * 179.97438 * 24 23 22 26 26 H 1.08003 * 119.99673 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00266 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00266 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47214 * 5.00600 * 3 2 1 30 30 H 1.08997 * 109.47185 * 244.99822 * 3 2 1 31 31 H 1.08996 * 109.47055 * 29.99917 * 5 4 3 32 32 H 1.08999 * 109.46977 * 150.00226 * 5 4 3 33 33 H 0.96993 * 119.99944 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47076 * 60.00196 * 16 14 4 35 35 H 1.08996 * 109.47513 * 300.00796 * 16 14 4 36 36 H 1.08005 * 119.95593 * 359.97438 * 18 17 16 37 37 H 1.07996 * 119.91367 * 180.02562 * 19 18 17 38 38 H 1.08010 * 119.95940 * 180.27522 * 20 19 18 39 39 H 1.08001 * 120.03933 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.46571 * 299.99636 * 24 23 22 41 41 H 1.08996 * 109.47477 * 59.99955 * 24 23 22 42 42 H 1.09004 * 109.46945 * 60.00013 * 25 24 23 43 43 H 1.09004 * 109.46967 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.47244 * 299.99998 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8650 2.4249 6 6 2.8441 3.3437 2.4805 7 1 3.3038 3.8371 1.6368 8 6 2.5192 4.0665 3.6087 9 7 1.9599 3.4657 4.6362 10 14 2.8735 5.8994 3.6779 11 1 2.1376 6.5873 2.5867 12 1 2.4326 6.4396 4.9889 13 1 4.3314 6.1283 3.5126 14 6 4.2498 0.8664 0.9824 15 8 5.0196 0.8881 1.9192 16 6 4.6970 0.3176 -0.3480 17 6 6.1312 -0.1340 -0.2486 18 6 7.1516 0.7159 -0.6279 19 6 8.4680 0.3025 -0.5366 20 6 8.7679 -0.9630 -0.0657 21 6 7.7531 -1.8181 0.3154 22 6 6.4288 -1.4059 0.2253 23 16 5.1303 -2.4937 0.7104 24 6 6.0215 -3.9829 1.2383 25 6 5.0175 -5.0420 1.6979 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0897 30 1 2.6213 1.4027 -0.9313 31 1 1.4888 1.6967 2.5460 32 1 3.0990 1.3604 3.2260 33 1 1.7317 3.9742 5.4300 34 1 4.6120 1.0940 -1.1084 35 1 4.0678 -0.5293 -0.6218 36 1 6.9210 1.7046 -0.9964 37 1 9.2638 0.9694 -0.8336 38 1 9.7975 -1.2809 0.0085 39 1 7.9881 -2.8059 0.6833 40 1 6.6045 -4.3724 0.4036 41 1 6.6892 -3.7337 2.0629 42 1 4.3494 -5.2914 0.8735 43 1 5.5529 -5.9371 2.0147 44 1 4.4348 -4.6523 2.5326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908344682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:30 Heat of formation + Delta-G solvation = 4.565967 kcal Electronic energy + Delta-G solvation = -24434.519327 eV Core-core repulsion = 21057.405900 eV Total energy + Delta-G solvation = -3377.113427 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.61414 -38.36769 -35.55386 -33.38552 -33.09086 -32.45207 -31.95198 -30.95522 -28.39207 -26.72880 -25.28078 -23.98390 -22.83263 -22.71578 -21.14434 -19.86383 -18.34610 -17.30929 -16.52537 -16.22467 -16.15565 -15.67373 -15.28910 -14.99480 -14.82046 -14.54238 -14.23104 -14.07866 -13.87795 -13.08197 -13.01783 -12.83990 -12.46710 -12.35767 -12.22608 -12.14296 -11.65724 -11.61451 -11.59263 -11.32292 -11.14932 -10.97503 -10.87590 -10.86366 -10.52587 -10.14571 -10.00386 -9.61926 -9.58954 -9.12014 -8.98803 -8.56753 -8.37967 -7.59307 -7.26041 -5.98915 -4.03518 1.32681 1.43954 1.56708 2.48547 2.52193 3.34438 3.38896 3.41329 3.54762 3.72161 4.19257 4.49710 4.71241 4.75172 4.81474 4.86549 5.05813 5.17500 5.18038 5.33396 5.35351 5.39609 5.46997 5.49695 5.53427 5.57065 5.59130 5.68616 5.74422 5.87812 5.92369 6.07109 6.09056 6.25701 6.31402 6.52012 6.62230 6.86877 6.97531 6.99800 7.17449 7.53417 7.63410 7.97962 8.29890 8.49909 8.96305 9.19345 9.61304 11.09074 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.004226 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.177485 B = 6624.519453 C = 7640.906476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.166 4.166 3 C 0.135 3.865 4 N -0.595 5.595 5 C 0.250 3.750 6 C -0.525 4.525 7 H 0.056 0.944 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.513 3.487 15 O -0.527 6.527 16 C -0.110 4.110 17 C -0.036 4.036 18 C -0.090 4.090 19 C -0.125 4.125 20 C -0.107 4.107 21 C -0.136 4.136 22 C -0.069 4.069 23 S -0.105 6.105 24 C -0.118 4.118 25 C -0.137 4.137 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.538 -13.957 -13.262 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.186 4.186 3 C 0.011 3.989 4 N -0.326 5.326 5 C 0.131 3.869 6 C -0.564 4.564 7 H 0.074 0.926 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.299 3.701 15 O -0.403 6.403 16 C -0.151 4.151 17 C -0.042 4.042 18 C -0.110 4.110 19 C -0.145 4.145 20 C -0.127 4.127 21 C -0.159 4.159 22 C -0.181 4.181 23 S 0.139 5.861 24 C -0.266 4.266 25 C -0.195 4.195 26 H 0.111 0.889 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.620 -13.851 -12.485 19.476 hybrid contribution 1.526 0.907 0.160 1.782 sum 7.146 -12.944 -12.325 19.249 Atomic orbital electron populations 1.23794 0.95834 1.01653 1.00936 1.23458 0.96396 0.99141 0.99558 1.20583 0.93167 0.95330 0.89774 1.48183 1.10351 1.60577 1.13502 1.19233 0.95288 0.93569 0.78846 1.21408 1.40400 0.93427 1.01166 0.92592 1.24919 0.95129 0.98613 0.95364 1.69929 1.42122 1.36176 1.05146 0.86592 0.78796 0.85106 0.77117 1.20278 1.21211 1.20230 1.19975 0.82406 0.78672 0.89028 1.90688 1.52460 1.55584 1.41564 1.20823 0.93507 1.02297 0.98446 1.18997 0.94757 0.91918 0.98507 1.20967 0.92251 0.98695 0.99068 1.21072 0.96313 0.96268 1.00858 1.20943 0.98495 0.94157 0.99107 1.21028 0.91525 1.00208 1.03179 1.21512 0.96246 0.97548 1.02834 1.85616 1.11257 1.09235 1.80000 1.23623 1.01963 0.96832 1.04162 1.21502 0.98616 0.97078 1.02317 0.88852 0.88368 0.87665 0.89503 0.90935 0.95079 0.93927 0.92740 0.88347 0.88348 0.85635 0.85979 0.86113 0.86257 0.89776 0.89505 0.91660 0.90992 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 14.32 29.01 0.42 -2.05 16 2 C -0.17 -2.46 9.74 -36.02 -0.35 -2.81 16 3 C 0.14 2.26 5.65 -5.19 -0.03 2.23 16 4 N -0.59 -12.86 2.44 -176.43 -0.43 -13.29 16 5 C 0.25 6.68 5.16 -5.19 -0.03 6.65 16 6 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 7 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 10 Si 0.90 22.14 29.54 -169.99 -5.02 17.11 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 14 C 0.51 10.99 7.65 -10.98 -0.08 10.91 16 15 O -0.53 -13.72 15.61 5.56 0.09 -13.63 16 16 C -0.11 -1.77 3.85 -29.04 -0.11 -1.89 16 17 C -0.04 -0.58 4.39 -104.40 -0.46 -1.04 16 18 C -0.09 -1.32 9.68 -39.61 -0.38 -1.70 16 19 C -0.12 -1.60 10.04 -39.54 -0.40 -1.99 16 20 C -0.11 -1.32 10.04 -39.62 -0.40 -1.72 16 21 C -0.14 -1.82 9.36 -39.37 -0.37 -2.19 16 22 C -0.07 -1.06 6.11 -39.04 -0.24 -1.30 16 23 S -0.10 -1.51 20.22 -107.50 -2.17 -3.68 16 24 C -0.12 -1.23 5.05 37.16 0.19 -1.04 16 25 C -0.14 -1.21 9.92 37.16 0.37 -0.84 16 26 H 0.09 1.08 8.06 -52.48 -0.42 0.66 16 27 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 28 H 0.11 1.51 7.83 -52.49 -0.41 1.10 16 29 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 30 H 0.07 1.00 6.44 -51.93 -0.33 0.67 16 31 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.10 1.34 7.31 -51.93 -0.38 0.96 16 35 H 0.10 1.44 6.64 -51.93 -0.34 1.09 16 36 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.12 1.33 5.88 -52.49 -0.31 1.02 16 40 H 0.08 0.75 7.75 -51.92 -0.40 0.35 16 41 H 0.09 0.92 7.75 -51.93 -0.40 0.52 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -34.49 381.67 -10.05 -44.54 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.71 Total: 1.99 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -2.30 Total: -12.50 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.31 Total: -39.57 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.17 Total: -3.68 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.49 -10.05 -44.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908344682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.108 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds