Wall clock time and date at job start Tue Mar 31 2020 12:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50705 * 119.99628 * 2 1 4 4 N 1.46497 * 109.46934 * 125.00065 * 3 2 1 5 5 C 1.46509 * 120.00151 * 269.99896 * 4 3 2 6 6 C 1.50701 * 109.47180 * 270.00236 * 5 4 3 7 7 H 1.08005 * 119.99839 * 359.97438 * 6 5 4 8 8 C 1.37866 * 119.99933 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00389 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 120.00056 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46933 * 59.99927 * 10 8 6 12 12 H 1.48494 * 109.47000 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47105 * 299.99962 * 10 8 6 14 14 C 1.34782 * 120.00223 * 90.00191 * 4 3 2 15 15 O 1.21274 * 119.99981 * 180.02562 * 14 4 3 16 16 C 1.50698 * 119.99648 * 359.97438 * 14 4 3 17 17 C 1.50698 * 109.47145 * 180.02562 * 16 14 4 18 18 C 1.38108 * 120.04224 * 265.02364 * 17 16 14 19 19 C 1.38280 * 120.07955 * 179.97438 * 18 17 16 20 20 C 1.38316 * 120.16146 * 0.02562 * 19 18 17 21 21 C 1.38065 * 120.08242 * 359.97438 * 20 19 18 22 22 C 1.38955 * 120.03918 * 85.00233 * 17 16 14 23 23 S 1.76197 * 120.07807 * 0.02562 * 22 17 16 24 24 C 1.81408 * 102.99664 * 180.02562 * 23 22 17 25 25 C 1.53004 * 109.46878 * 179.97438 * 24 23 22 26 26 H 1.08003 * 119.99673 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00266 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00266 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47214 * 5.00600 * 3 2 1 30 30 H 1.08997 * 109.47185 * 244.99822 * 3 2 1 31 31 H 1.08996 * 109.47055 * 29.99917 * 5 4 3 32 32 H 1.08999 * 109.46977 * 150.00226 * 5 4 3 33 33 H 0.96993 * 119.99944 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47076 * 60.00196 * 16 14 4 35 35 H 1.08996 * 109.47513 * 300.00796 * 16 14 4 36 36 H 1.08005 * 119.95593 * 359.97438 * 18 17 16 37 37 H 1.07996 * 119.91367 * 180.02562 * 19 18 17 38 38 H 1.08010 * 119.95940 * 180.27522 * 20 19 18 39 39 H 1.08001 * 120.03933 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.46571 * 299.99636 * 24 23 22 41 41 H 1.08996 * 109.47477 * 59.99955 * 24 23 22 42 42 H 1.09004 * 109.46945 * 60.00013 * 25 24 23 43 43 H 1.09004 * 109.46967 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.47244 * 299.99998 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8650 2.4249 6 6 2.8441 3.3437 2.4805 7 1 3.3038 3.8371 1.6368 8 6 2.5192 4.0665 3.6087 9 7 1.9599 3.4657 4.6362 10 14 2.8735 5.8994 3.6779 11 1 2.1376 6.5873 2.5867 12 1 2.4326 6.4396 4.9889 13 1 4.3314 6.1283 3.5126 14 6 4.2498 0.8664 0.9824 15 8 5.0196 0.8881 1.9192 16 6 4.6970 0.3176 -0.3480 17 6 6.1312 -0.1340 -0.2486 18 6 7.1516 0.7159 -0.6279 19 6 8.4680 0.3025 -0.5366 20 6 8.7679 -0.9630 -0.0657 21 6 7.7531 -1.8181 0.3154 22 6 6.4288 -1.4059 0.2253 23 16 5.1303 -2.4937 0.7104 24 6 6.0215 -3.9829 1.2383 25 6 5.0175 -5.0420 1.6979 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3585 2.1317 0.0897 30 1 2.6213 1.4027 -0.9313 31 1 1.4888 1.6967 2.5460 32 1 3.0990 1.3604 3.2260 33 1 1.7317 3.9742 5.4300 34 1 4.6120 1.0940 -1.1084 35 1 4.0678 -0.5293 -0.6218 36 1 6.9210 1.7046 -0.9964 37 1 9.2638 0.9694 -0.8336 38 1 9.7975 -1.2809 0.0085 39 1 7.9881 -2.8059 0.6833 40 1 6.6045 -4.3724 0.4036 41 1 6.6892 -3.7337 2.0629 42 1 4.3494 -5.2914 0.8735 43 1 5.5529 -5.9371 2.0147 44 1 4.4348 -4.6523 2.5326 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908344682.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:29 Heat of formation + Delta-G solvation = -14.059963 kcal Electronic energy + Delta-G solvation = -24435.327008 eV Core-core repulsion = 21057.405900 eV Total energy + Delta-G solvation = -3377.921108 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 319.135 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03093 -39.67287 -37.15610 -35.17099 -34.18133 -33.64131 -33.51087 -31.95922 -30.10963 -28.24614 -26.82827 -25.05435 -24.49615 -23.77270 -22.34342 -21.11168 -19.90317 -18.62090 -18.37073 -17.84995 -17.40001 -17.03563 -16.64793 -16.20503 -15.89439 -15.78150 -15.75881 -15.38988 -14.97817 -14.48800 -14.36419 -14.17947 -14.07448 -13.56495 -13.34830 -13.27617 -13.17207 -12.97508 -12.92933 -12.75914 -12.57801 -12.42611 -12.26826 -12.20418 -12.16438 -11.87866 -11.67884 -11.01632 -10.68694 -10.63320 -10.58988 -10.30575 -9.74544 -9.42238 -8.34454 -8.20630 -6.35722 0.27575 0.38953 0.58225 1.34165 1.36526 1.40818 1.48094 1.50804 1.89976 2.34746 2.48725 2.84344 3.08651 3.66477 3.83860 3.87000 3.94236 3.97727 4.08871 4.14661 4.27319 4.28598 4.39453 4.43712 4.50078 4.53869 4.62947 4.80064 4.83068 4.85144 4.86939 5.01250 5.05882 5.09600 5.17632 5.25231 5.30981 5.49687 5.54322 5.57098 5.72984 5.78093 5.97902 6.00576 6.08503 6.71348 6.81195 7.30079 7.53094 8.86396 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.004226 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.177485 B = 6624.519453 C = 7640.906476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.184 4.184 3 C 0.132 3.868 4 N -0.600 5.600 5 C 0.269 3.731 6 C -0.541 4.541 7 H 0.054 0.946 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.967 3.033 11 H -0.259 1.259 12 H -0.279 1.279 13 H -0.278 1.278 14 C 0.509 3.491 15 O -0.583 6.583 16 C -0.093 4.093 17 C -0.067 4.067 18 C -0.107 4.107 19 C -0.128 4.128 20 C -0.105 4.105 21 C -0.145 4.145 22 C -0.084 4.084 23 S -0.160 6.160 24 C -0.103 4.103 25 C -0.134 4.134 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.018 0.982 32 H -0.008 1.008 33 H 0.266 0.734 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.140 0.860 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.585 -14.214 -15.049 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.203 4.203 3 C 0.010 3.990 4 N -0.330 5.330 5 C 0.147 3.853 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.791 3.209 11 H -0.183 1.183 12 H -0.204 1.204 13 H -0.204 1.204 14 C 0.298 3.702 15 O -0.463 6.463 16 C -0.133 4.133 17 C -0.073 4.073 18 C -0.126 4.126 19 C -0.149 4.149 20 C -0.125 4.125 21 C -0.168 4.168 22 C -0.197 4.197 23 S 0.083 5.917 24 C -0.251 4.251 25 C -0.193 4.193 26 H 0.134 0.866 27 H 0.118 0.882 28 H 0.127 0.873 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.036 0.964 32 H 0.010 0.990 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.130 0.870 36 H 0.152 0.848 37 H 0.168 0.832 38 H 0.172 0.828 39 H 0.158 0.842 40 H 0.123 0.877 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.117 0.883 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.639 -14.118 -14.329 21.183 hybrid contribution 1.208 0.891 0.739 1.673 sum 7.848 -13.227 -13.590 20.524 Atomic orbital electron populations 1.24030 0.95409 1.02856 0.98366 1.23323 0.96861 0.98250 1.01839 1.20833 0.92776 0.96262 0.89125 1.48175 1.11627 1.60210 1.13024 1.18626 0.93555 0.92657 0.80422 1.21680 1.40529 0.94363 1.01431 0.92748 1.25860 0.94646 1.03766 0.94812 1.70061 1.42884 1.38191 1.05759 0.85483 0.78486 0.79008 0.77925 1.18299 1.20369 1.20353 1.20875 0.81457 0.77435 0.90432 1.90642 1.53957 1.57801 1.43919 1.20711 0.94205 1.03141 0.95256 1.19164 0.94823 0.92904 1.00423 1.21242 0.93008 0.98992 0.99403 1.21461 0.96272 0.97024 1.00100 1.21395 0.99901 0.93666 0.97503 1.21391 0.91007 1.01472 1.02949 1.21704 0.97137 0.97634 1.03178 1.85698 1.13522 1.11956 1.80517 1.23709 1.01922 0.94754 1.04705 1.21535 0.98506 0.97366 1.01878 0.86624 0.88158 0.87300 0.90293 0.87713 0.96380 0.98959 0.92472 0.85831 0.86988 0.84835 0.83198 0.82778 0.84213 0.87677 0.89663 0.91225 0.88266 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.32 14.32 67.78 0.97 -3.35 16 2 C -0.18 -5.34 9.74 25.64 0.25 -5.09 16 3 C 0.13 4.40 5.65 85.64 0.48 4.88 16 4 N -0.60 -26.84 2.44 -830.49 -2.03 -28.87 16 5 C 0.27 15.15 5.16 85.63 0.44 15.60 16 6 C -0.54 -32.05 9.39 25.60 0.24 -31.81 16 7 H 0.05 3.16 7.81 -2.91 -0.02 3.13 16 8 C 0.01 0.47 5.46 84.65 0.46 0.93 16 9 N -0.93 -57.66 13.29 21.44 0.28 -57.38 16 10 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 11 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 14 C 0.51 22.55 7.65 87.66 0.67 23.22 16 15 O -0.58 -31.98 15.61 -3.01 -0.05 -32.03 16 16 C -0.09 -3.00 3.85 29.10 0.11 -2.89 16 17 C -0.07 -2.17 4.39 -19.72 -0.09 -2.25 16 18 C -0.11 -3.05 9.68 22.25 0.22 -2.84 16 19 C -0.13 -3.04 10.04 22.30 0.22 -2.82 16 20 C -0.11 -2.35 10.04 22.25 0.22 -2.12 16 21 C -0.14 -3.68 9.36 22.41 0.21 -3.47 16 22 C -0.08 -2.58 6.11 22.62 0.14 -2.44 16 23 S -0.16 -4.67 20.22 -56.49 -1.14 -5.82 16 24 C -0.10 -2.04 5.05 71.98 0.36 -1.67 16 25 C -0.13 -2.20 9.92 71.98 0.71 -1.49 16 26 H 0.12 2.45 8.06 -2.91 -0.02 2.42 16 27 H 0.10 2.52 7.84 -2.91 -0.02 2.50 16 28 H 0.11 3.10 7.83 -2.91 -0.02 3.08 16 29 H 0.08 2.73 7.72 -2.39 -0.02 2.71 16 30 H 0.10 2.75 6.44 -2.39 -0.02 2.74 16 31 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 32 H -0.01 -0.51 7.42 -2.39 -0.02 -0.52 16 33 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.12 3.23 7.31 -2.38 -0.02 3.21 16 35 H 0.11 3.26 6.64 -2.39 -0.02 3.25 16 36 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 38 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.14 2.82 5.88 -2.91 -0.02 2.80 16 40 H 0.10 1.64 7.75 -2.39 -0.02 1.62 16 41 H 0.08 1.71 7.75 -2.39 -0.02 1.70 16 42 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -78.94 381.67 5.70 -73.24 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.97 Total: 20.70 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 5.63 Total: -17.61 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -1.74 Total: -86.24 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.05 Total: -32.03 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 16 Polarization: -4.67 SS G_CDS: -1.14 Total: -5.82 kcal Total: -78.94 5.70 -73.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908344682.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.179 kcal (2) G-P(sol) polarization free energy of solvation -78.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds