Wall clock time and date at job start Tue Mar 31 2020 12:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35908 * 117.00638 * 2 1 4 4 C 1.39828 * 119.55626 * 359.97438 * 3 2 1 5 5 C 1.35994 * 120.90637 * 179.97438 * 4 3 2 6 6 C 1.40642 * 119.74502 * 359.97438 * 5 4 3 7 7 C 1.40420 * 121.12130 * 180.02562 * 6 5 4 8 8 C 1.37827 * 119.51331 * 179.72166 * 7 6 5 9 9 N 1.39567 * 119.67152 * 180.25313 * 8 7 6 10 10 C 1.38777 * 120.00221 * 147.57973 * 9 8 7 11 11 C 1.39610 * 119.84447 * 330.69065 * 10 9 8 12 12 C 1.36309 * 120.15631 * 179.71744 * 11 10 9 13 13 C 1.40905 * 119.83987 * 0.55214 * 12 11 10 14 14 C 1.41097 * 120.15299 * 179.70211 * 13 12 11 15 15 H 1.07997 * 120.00125 * 151.96192 * 14 13 12 16 16 C 1.39827 * 119.99813 * 331.96070 * 14 13 12 17 17 N 1.30922 * 120.00259 * 339.65801 * 16 14 13 18 18 Si 1.86809 * 120.00033 * 159.66157 * 16 14 13 19 19 H 1.48501 * 109.47126 * 94.97852 * 18 16 14 20 20 H 1.48501 * 109.47046 * 214.97751 * 18 16 14 21 21 H 1.48496 * 109.47046 * 334.97785 * 18 16 14 22 22 C 1.40911 * 119.69453 * 359.71986 * 13 12 11 23 23 C 1.36300 * 119.83959 * 359.97438 * 22 13 12 24 24 C 1.40065 * 120.66006 * 0.23411 * 8 7 6 25 25 C 1.35890 * 120.91268 * 359.97438 * 24 8 7 26 26 C 1.40643 * 119.91944 * 0.02562 * 25 24 8 27 27 C 1.36586 * 119.56149 * 180.42647 * 3 2 1 28 28 H 1.08996 * 109.47469 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46762 * 300.00124 * 1 2 3 30 30 H 1.09001 * 109.46634 * 60.00000 * 1 2 3 31 31 H 1.07999 * 119.54562 * 359.97438 * 4 3 2 32 32 H 1.08005 * 120.12853 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.24547 * 359.97438 * 7 6 5 34 34 H 0.97008 * 120.00342 * 327.57772 * 9 8 7 35 35 H 1.07998 * 119.92389 * 359.97438 * 11 10 9 36 36 H 1.07997 * 120.08020 * 180.25570 * 12 11 10 37 37 H 0.96998 * 120.00341 * 180.02562 * 17 16 14 38 38 H 1.08000 * 120.07851 * 179.97438 * 22 13 12 39 39 H 1.08003 * 119.91823 * 179.97438 * 23 22 13 40 40 H 1.08001 * 119.54621 * 180.02562 * 24 8 7 41 41 H 1.08000 * 120.04080 * 180.02562 * 25 24 8 42 42 H 1.07997 * 120.16743 * 359.50934 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2109 0.0000 4 6 1.2757 2.3777 -0.0005 5 6 1.8645 3.6036 0.0000 6 6 3.2673 3.7039 0.0016 7 6 3.9055 4.9547 0.0027 8 6 5.2825 5.0143 0.0101 9 7 5.9202 6.2558 0.0166 10 6 7.1363 6.4078 0.6677 11 6 7.4369 5.6101 1.7734 12 6 8.6318 5.7502 2.4142 13 6 9.5597 6.7108 1.9653 14 6 10.7960 6.8657 2.6276 15 1 11.6581 7.2241 2.0849 16 6 10.9048 6.5550 3.9866 17 7 9.8320 6.5095 4.7356 18 14 12.5809 6.2052 4.7335 19 1 13.1232 7.4488 5.3372 20 1 12.4474 5.1629 5.7828 21 1 13.5045 5.7256 3.6741 22 6 9.2473 7.5164 0.8522 23 6 8.0513 7.3613 0.2171 24 6 6.0482 3.8415 0.0116 25 6 5.4537 2.6196 0.0063 26 6 4.0507 2.5221 -0.0013 27 6 3.4106 1.2718 -0.0088 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.1982 2.3044 -0.0014 32 1 1.2572 4.4967 -0.0009 33 1 3.3217 5.8633 0.0019 34 1 5.5135 7.0124 -0.4341 35 1 6.7227 4.8776 2.1193 36 1 8.8647 5.1296 3.2668 37 1 9.9075 6.2944 5.6784 38 1 9.9538 8.2549 0.5031 39 1 7.8103 7.9783 -0.6359 40 1 7.1261 3.9092 0.0179 41 1 6.0578 1.7244 0.0080 42 1 3.9945 0.3632 -0.0078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001174032725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:18 Heat of formation + Delta-G solvation = 15.668280 kcal Electronic energy + Delta-G solvation = -24559.108076 eV Core-core repulsion = 21047.032130 eV Total energy + Delta-G solvation = -3512.075946 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58235 -40.39129 -39.36919 -37.48964 -35.66055 -34.61589 -33.28732 -31.53571 -30.98249 -30.60392 -29.27402 -27.68065 -26.24223 -24.55520 -23.37847 -23.14078 -22.62946 -21.94332 -19.34976 -19.16833 -18.45972 -18.19273 -17.49561 -16.95612 -16.58716 -16.48657 -16.14440 -15.70352 -15.40190 -15.29376 -14.75668 -14.61633 -14.31920 -14.24201 -14.00975 -13.88139 -13.70434 -13.38282 -13.21254 -13.04736 -12.78810 -12.71546 -12.54138 -12.39987 -12.28009 -11.75958 -11.65809 -11.55622 -11.36006 -11.13701 -10.92331 -10.23634 -9.49902 -9.32314 -8.87016 -8.62974 -7.91819 -6.15244 -0.35949 0.13193 0.97050 1.09869 1.20099 1.39296 1.49074 1.55128 2.09171 2.23083 2.45016 2.69392 2.75395 3.22111 3.71478 3.74007 3.92322 4.00165 4.27431 4.28828 4.36269 4.36559 4.41445 4.44245 4.44984 4.49729 4.65105 4.77259 4.86716 4.94510 5.00448 5.08716 5.18642 5.25959 5.29353 5.35104 5.35807 5.48852 5.52975 5.63856 5.73842 5.82648 5.89046 5.99060 6.10823 6.30705 6.50543 6.58590 6.77139 6.97513 7.00533 7.14176 8.37555 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.021708 B = 0.002520 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.533534 B =11109.455758 C =11908.050493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.102 3.898 4 C -0.181 4.181 5 C -0.079 4.079 6 C -0.057 4.057 7 C -0.177 4.177 8 C 0.182 3.818 9 N -0.674 5.674 10 C 0.056 3.944 11 C -0.129 4.129 12 C -0.159 4.159 13 C 0.064 3.936 14 C -0.502 4.502 15 H 0.075 0.925 16 C 0.036 3.964 17 N -0.831 5.831 18 Si 0.975 3.025 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.259 1.259 22 C -0.210 4.210 23 C -0.124 4.124 24 C -0.145 4.145 25 C -0.091 4.091 26 C -0.062 4.062 27 C -0.157 4.157 28 H 0.116 0.884 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.144 0.856 34 H 0.410 0.590 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.286 0.714 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.141 0.859 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.574 -8.529 -8.343 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.057 3.943 4 C -0.199 4.199 5 C -0.097 4.097 6 C -0.058 4.058 7 C -0.200 4.200 8 C 0.082 3.918 9 N -0.298 5.298 10 C -0.039 4.039 11 C -0.150 4.150 12 C -0.179 4.179 13 C 0.061 3.939 14 C -0.532 4.532 15 H 0.093 0.907 16 C -0.178 4.178 17 N -0.457 5.457 18 Si 0.796 3.204 19 H -0.188 1.188 20 H -0.193 1.193 21 H -0.183 1.183 22 C -0.230 4.230 23 C -0.145 4.145 24 C -0.165 4.165 25 C -0.110 4.110 26 C -0.063 4.063 27 C -0.176 4.176 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.174 0.826 32 H 0.173 0.827 33 H 0.161 0.839 34 H 0.246 0.754 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.142 0.858 40 H 0.129 0.871 41 H 0.159 0.841 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.475 -8.792 -8.040 21.150 hybrid contribution 0.706 0.376 0.513 0.950 sum -16.769 -8.416 -7.528 20.216 Atomic orbital electron populations 1.23333 0.76602 1.05468 1.02267 1.86058 1.23404 1.26759 1.89126 1.18730 0.92127 0.84921 0.98510 1.21277 1.01382 0.91603 1.05607 1.21113 0.92557 0.98573 0.97428 1.18011 0.94217 0.92202 1.01380 1.20884 0.91947 0.97648 1.09533 1.17849 0.91646 0.85659 0.96635 1.41449 1.20755 1.09137 1.58444 1.17208 0.88281 1.02887 0.95561 1.20334 0.97350 1.01617 0.95672 1.20700 0.95587 1.00348 1.01260 1.17899 0.93516 0.90212 0.92242 1.19650 0.96715 1.41851 0.95011 0.90661 1.26672 1.01954 0.91787 0.97386 1.69930 1.32610 1.35593 1.07611 0.85299 0.77792 0.79031 0.78240 1.18773 1.19346 1.18264 1.20791 0.97934 1.02612 1.01665 1.20329 0.93399 1.00549 1.00238 1.20858 0.99983 0.92311 1.03341 1.20951 0.93461 0.97528 0.99046 1.17842 0.93286 0.92641 1.02533 1.20225 0.92439 0.97249 1.07651 0.86548 0.91767 0.91545 0.82556 0.82746 0.83874 0.75358 0.88639 0.89070 0.90383 0.87825 0.85789 0.87067 0.84121 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.80 113.37 1.11 1.30 16 2 O -0.34 -7.03 10.47 -92.51 -0.97 -8.00 16 3 C 0.10 2.36 6.64 22.27 0.15 2.51 16 4 C -0.18 -3.45 8.93 22.13 0.20 -3.25 16 5 C -0.08 -1.64 9.76 22.34 0.22 -1.42 16 6 C -0.06 -1.55 5.74 -21.29 -0.12 -1.67 16 7 C -0.18 -4.92 9.70 22.70 0.22 -4.70 16 8 C 0.18 5.95 5.81 38.26 0.22 6.17 16 9 N -0.67 -22.73 5.39 -180.24 -0.97 -23.70 16 10 C 0.06 2.35 5.92 38.71 0.23 2.58 16 11 C -0.13 -6.05 7.89 22.15 0.17 -5.87 16 12 C -0.16 -8.43 8.62 22.47 0.19 -8.24 16 13 C 0.06 3.45 5.52 -21.27 -0.12 3.34 16 14 C -0.50 -27.29 9.00 23.36 0.21 -27.08 16 15 H 0.08 3.94 7.92 -2.91 -0.02 3.92 16 16 C 0.04 1.86 5.04 85.21 0.43 2.29 16 17 N -0.83 -44.57 11.36 21.81 0.25 -44.32 16 18 Si 0.98 38.93 29.61 68.60 2.03 40.96 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 20 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 22 C -0.21 -10.09 9.74 22.47 0.22 -9.87 16 23 C -0.12 -5.23 9.88 22.15 0.22 -5.01 16 24 C -0.14 -4.89 7.81 22.17 0.17 -4.72 16 25 C -0.09 -2.72 9.74 22.31 0.22 -2.50 16 26 C -0.06 -1.77 5.74 -21.27 -0.12 -1.90 16 27 C -0.16 -4.07 9.67 22.43 0.22 -3.86 16 28 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.58 7.64 -2.39 -0.02 0.56 16 30 H 0.07 0.56 7.63 -2.39 -0.02 0.55 16 31 H 0.16 1.91 6.21 -2.91 -0.02 1.89 16 32 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 33 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 34 H 0.41 11.43 8.89 -92.70 -0.82 10.61 16 35 H 0.10 4.35 6.62 -2.91 -0.02 4.33 16 36 H 0.09 5.12 6.51 -2.91 -0.02 5.10 16 37 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 38 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.11 4.16 6.72 -2.91 -0.02 4.14 16 41 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.13 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -63.74 352.04 4.61 -59.13 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: 0.23 Total: 37.83 kcal Atomic # 6 Polarization: -65.94 SS G_CDS: 4.04 Total: -61.90 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -0.72 Total: -68.02 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.97 Total: -8.00 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -63.74 4.61 -59.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174032725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.799 kcal (2) G-P(sol) polarization free energy of solvation -63.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds