Wall clock time and date at job start Tue Mar 31 2020 12:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86292 * 109.47060 * 2 1 4 4 C 1.86302 * 109.46987 * 239.99758 * 2 1 3 5 5 C 1.86302 * 109.46994 * 120.00077 * 2 1 3 6 6 C 1.52995 * 109.47351 * 59.99861 * 5 2 1 7 7 S 1.81404 * 109.47283 * 179.97438 * 6 5 2 8 8 O 1.42101 * 110.54115 * 68.37566 * 7 6 5 9 9 O 1.42101 * 110.54015 * 291.62607 * 7 6 5 10 10 N 1.65600 * 104.44799 * 179.97438 * 7 6 5 11 11 C 1.44575 * 118.64548 * 90.00387 * 10 7 6 12 12 C 1.54867 * 109.59614 * 270.74746 * 11 10 7 13 13 C 1.47094 * 110.32132 * 288.72977 * 12 11 10 14 14 C 1.52569 * 114.20682 * 62.87963 * 13 12 11 15 15 C 1.50698 * 109.48802 * 154.94365 * 14 13 12 16 16 N 1.27946 * 120.00344 * 95.00360 * 15 14 13 17 17 Si 1.86804 * 120.00204 * 274.99937 * 15 14 13 18 18 H 1.48504 * 109.46938 * 0.02562 * 17 15 14 19 19 H 1.48507 * 109.47080 * 120.00012 * 17 15 14 20 20 H 1.48491 * 109.47410 * 240.00023 * 17 15 14 21 21 C 1.51028 * 109.27958 * 274.78244 * 14 13 12 22 22 C 1.47608 * 118.64248 * 270.01785 * 10 7 6 23 23 H 1.09000 * 109.47105 * 300.00125 * 1 2 3 24 24 H 1.09002 * 109.47142 * 59.99878 * 1 2 3 25 25 H 1.08998 * 109.47395 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47119 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47412 * 299.99549 * 3 2 1 28 28 H 1.08999 * 109.47953 * 60.00262 * 3 2 1 29 29 H 1.08998 * 109.47131 * 300.00257 * 4 2 1 30 30 H 1.09002 * 109.46882 * 60.00205 * 4 2 1 31 31 H 1.08996 * 109.46959 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47030 * 299.99844 * 5 2 1 33 33 H 1.08996 * 109.46905 * 180.02562 * 5 2 1 34 34 H 1.08995 * 109.47289 * 59.99591 * 6 5 2 35 35 H 1.09006 * 109.47245 * 299.99889 * 6 5 2 36 36 H 1.08993 * 109.45266 * 150.70799 * 11 10 7 37 37 H 1.09004 * 109.43057 * 30.76844 * 11 10 7 38 38 H 1.09000 * 109.32579 * 168.46820 * 12 11 10 39 39 H 1.08997 * 109.33054 * 48.98899 * 12 11 10 40 40 H 1.09002 * 108.51267 * 184.05828 * 13 12 11 41 41 H 1.09004 * 108.51274 * 301.70694 * 13 12 11 42 42 H 1.08998 * 109.48741 * 34.87798 * 14 13 12 43 43 H 0.96997 * 120.00564 * 180.02562 * 16 15 14 44 44 H 1.09004 * 109.44531 * 331.90231 * 21 14 13 45 45 H 1.09004 * 109.41469 * 212.21434 * 21 14 13 46 46 H 1.09001 * 108.94789 * 258.53665 * 22 10 7 47 47 H 1.09002 * 108.94538 * 17.16221 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3207 1.5212 7 16 2.5792 -3.1761 3.0020 8 8 1.9671 -2.6455 4.1695 9 8 3.9866 -3.3596 2.9315 10 7 1.9603 -4.7070 2.8768 11 6 2.7368 -5.7144 2.1894 12 6 2.3863 -5.7006 0.6810 13 6 1.0356 -6.2416 0.4654 14 6 -0.0764 -5.4266 1.1188 15 6 -1.3691 -5.6562 0.3791 16 7 -2.1939 -6.5427 0.7923 17 14 -1.7674 -4.6463 -1.1411 18 1 -0.6582 -3.6958 -1.4086 19 1 -1.9351 -5.5512 -2.3066 20 1 -3.0252 -3.8895 -0.9171 21 6 -0.2357 -5.8627 2.5560 22 6 0.6385 -4.9866 3.4713 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.5740 1.7564 -0.0005 27 1 2.1207 2.2702 -0.8900 28 1 2.1207 2.2703 0.8900 29 1 2.1206 -1.9059 -1.5211 30 1 2.1206 -0.3644 -2.4111 31 1 3.5739 -0.8779 -1.5213 32 1 2.1206 -0.3644 2.4111 33 1 3.5739 -0.8779 1.5214 34 1 2.3372 -2.8345 0.6312 35 1 0.8839 -2.3207 1.5212 36 1 2.5087 -6.6954 2.6061 37 1 3.7986 -5.5036 2.3173 38 1 3.1095 -6.3084 0.1371 39 1 2.4282 -4.6765 0.3102 40 1 0.8477 -6.2859 -0.6074 41 1 1.0013 -7.2557 0.8638 42 1 0.1801 -4.3678 1.0836 43 1 -3.0258 -6.6907 0.3160 44 1 0.0685 -6.9047 2.6548 45 1 -1.2804 -5.7636 2.8510 46 1 0.7797 -5.4995 4.4227 47 1 0.1253 -4.0423 3.6530 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195062441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:00 Heat of formation + Delta-G solvation = -95.996340 kcal Electronic energy + Delta-G solvation = -25295.669196 eV Core-core repulsion = 21956.436849 eV Total energy + Delta-G solvation = -3339.232347 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.36138 -38.10356 -37.03091 -36.76224 -34.45822 -34.00742 -33.16683 -29.60533 -28.55254 -28.53910 -27.85365 -26.66042 -24.79977 -23.04006 -22.07137 -20.48087 -19.57419 -18.72736 -17.99288 -17.45176 -17.30559 -16.30314 -16.19425 -15.66275 -15.38117 -14.85772 -14.76085 -14.64485 -14.60091 -14.29324 -14.09652 -14.07359 -13.94222 -13.67847 -13.56123 -13.37054 -13.35397 -13.30376 -13.20797 -13.14482 -12.98903 -12.90810 -12.57261 -12.45773 -12.38778 -12.31288 -11.94070 -11.84745 -11.73059 -11.63465 -11.30151 -10.96544 -10.93946 -10.68386 -9.96508 -9.85946 -0.71242 0.69085 0.93202 1.25115 1.56308 1.59553 1.64352 1.70489 1.73948 1.74277 2.47443 2.91740 3.13852 3.34119 3.41316 3.57762 3.69147 3.76476 3.93059 4.01080 4.04708 4.15013 4.31968 4.36126 4.48736 4.57897 4.59213 4.61270 4.64273 4.64843 4.66157 4.66781 4.67383 4.74397 4.77461 4.91020 4.93339 4.99325 5.04989 5.13321 5.19773 5.24165 5.34122 5.35575 5.42905 5.45428 5.69536 6.78279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.019 2.981 3 C -0.452 4.452 4 C -0.453 4.453 5 C -0.414 4.414 6 C -0.619 4.619 7 S 2.595 3.405 8 O -0.954 6.954 9 O -0.953 6.953 10 N -0.993 5.993 11 C 0.110 3.890 12 C -0.146 4.146 13 C -0.107 4.107 14 C -0.057 4.057 15 C 0.000 4.000 16 N -0.624 5.624 17 Si 0.907 3.093 18 H -0.227 1.227 19 H -0.240 1.240 20 H -0.240 1.240 21 C -0.114 4.114 22 C 0.117 3.883 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.336 0.664 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.898 -0.146 -4.597 4.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.562 4.562 2 Si 1.215 2.785 3 C -0.560 4.560 4 C -0.560 4.560 5 C -0.499 4.499 6 C -0.748 4.748 7 S 2.689 3.311 8 O -0.944 6.944 9 O -0.943 6.943 10 N -0.830 5.830 11 C -0.016 4.016 12 C -0.185 4.185 13 C -0.146 4.146 14 C -0.076 4.076 15 C -0.250 4.250 16 N -0.236 5.236 17 Si 0.723 3.277 18 H -0.148 1.148 19 H -0.163 1.163 20 H -0.163 1.163 21 C -0.153 4.153 22 C -0.007 4.007 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.153 0.847 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.091 0.909 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.574 -0.090 -3.777 4.092 hybrid contribution -0.866 0.042 -1.159 1.447 sum -2.440 -0.048 -4.935 5.506 Atomic orbital electron populations 1.26181 1.20661 1.04464 1.04856 0.79041 0.67147 0.66824 0.65535 1.26122 1.06502 1.18645 1.04724 1.26165 1.06572 1.08010 1.15289 1.25974 1.06921 0.98141 1.18847 1.30331 1.12754 1.08957 1.22758 1.05656 0.74779 0.73677 0.76998 1.93600 1.78080 1.78859 1.43900 1.93583 1.28986 1.84277 1.87499 1.57258 1.29056 1.26733 1.69914 1.21465 0.96018 0.93330 0.90791 1.21443 0.97583 1.02197 0.97313 1.20368 0.93206 1.00104 1.00873 1.20060 0.91425 1.00839 0.95270 1.30263 0.96237 0.96269 1.02182 1.68163 1.06452 1.15819 1.33159 0.86038 0.83146 0.81140 0.77386 1.14829 1.16343 1.16282 1.21754 1.00579 1.00261 0.92720 1.21789 0.81451 1.01245 0.96247 0.90868 0.90945 0.91312 0.91004 0.90991 0.91009 0.91223 0.90994 0.90910 0.88802 0.88776 0.84620 0.84818 0.89386 0.88565 0.89640 0.91922 0.91942 0.90882 0.89644 0.84703 0.90620 0.89470 0.90893 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.19 8.65 101.05 0.87 2.06 16 2 Si 1.02 -3.49 12.19 -169.99 -2.07 -5.57 16 3 C -0.45 0.95 8.65 101.05 0.87 1.82 16 4 C -0.45 1.20 8.65 101.05 0.87 2.08 16 5 C -0.41 0.90 4.46 37.15 0.17 1.06 16 6 C -0.62 1.54 4.96 37.15 0.18 1.72 16 7 S 2.60 2.85 5.31 -107.50 -0.57 2.28 16 8 O -0.95 -4.17 16.70 -57.54 -0.96 -5.13 16 9 O -0.95 -3.95 16.42 -57.54 -0.94 -4.89 16 10 N -0.99 0.83 2.46 -113.31 -0.28 0.55 16 11 C 0.11 -0.21 5.60 -4.09 -0.02 -0.23 16 12 C -0.15 0.49 5.74 -28.58 -0.16 0.32 16 13 C -0.11 0.32 4.62 -29.79 -0.14 0.18 16 14 C -0.06 0.14 1.73 -92.99 -0.16 -0.02 16 15 C 0.00 0.00 4.64 -13.90 -0.06 -0.06 16 16 N -0.62 0.43 12.49 56.23 0.70 1.13 16 17 Si 0.91 -1.99 29.05 -169.99 -4.94 -6.93 16 18 H -0.23 0.65 7.11 56.52 0.40 1.05 16 19 H -0.24 0.27 7.11 56.52 0.40 0.67 16 20 H -0.24 0.28 7.11 56.52 0.40 0.68 16 21 C -0.11 0.22 4.80 -27.23 -0.13 0.09 16 22 C 0.12 -0.16 5.90 -2.94 -0.02 -0.18 16 23 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 24 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 25 H 0.07 -0.22 7.79 -51.93 -0.40 -0.62 16 26 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 27 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.56 16 29 H 0.07 -0.22 7.79 -51.93 -0.40 -0.62 16 30 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 31 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 32 H 0.09 -0.22 7.96 -51.93 -0.41 -0.64 16 33 H 0.09 -0.23 7.96 -51.93 -0.41 -0.64 16 34 H 0.14 -0.63 5.89 -51.93 -0.31 -0.94 16 35 H 0.13 -0.64 7.19 -51.92 -0.37 -1.02 16 36 H 0.09 -0.23 8.06 -51.93 -0.42 -0.65 16 37 H 0.10 -0.09 6.75 -51.93 -0.35 -0.44 16 38 H 0.09 -0.35 8.14 -51.93 -0.42 -0.77 16 39 H 0.06 -0.27 6.06 -51.93 -0.31 -0.58 16 40 H 0.06 -0.22 7.39 -51.93 -0.38 -0.60 16 41 H 0.07 -0.19 7.35 -51.93 -0.38 -0.57 16 42 H 0.09 -0.34 6.10 -51.93 -0.32 -0.66 16 43 H 0.34 -0.63 8.23 -40.82 -0.34 -0.97 16 44 H 0.08 -0.12 7.31 -51.93 -0.38 -0.50 16 45 H 0.09 -0.11 7.24 -51.93 -0.38 -0.49 16 46 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 47 H 0.08 -0.15 7.20 -51.93 -0.37 -0.52 16 LS Contribution 372.64 15.07 5.62 5.62 Total: 0.00 -7.84 372.64 -9.65 -17.50 By element: Atomic # 1 Polarization: -4.92 SS G_CDS: -8.48 Total: -13.40 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 2.27 Total: 8.85 kcal Atomic # 7 Polarization: 1.25 SS G_CDS: 0.42 Total: 1.68 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -1.91 Total: -10.02 kcal Atomic # 14 Polarization: -5.49 SS G_CDS: -7.01 Total: -12.50 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -0.57 Total: 2.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -7.84 -9.65 -17.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195062441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.499 kcal (2) G-P(sol) polarization free energy of solvation -7.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds