Wall clock time and date at job start Tue Mar 31 2020 12:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86292 * 109.47060 * 2 1 4 4 C 1.86302 * 109.46987 * 239.99758 * 2 1 3 5 5 C 1.86302 * 109.46994 * 120.00077 * 2 1 3 6 6 C 1.52995 * 109.47351 * 59.99861 * 5 2 1 7 7 S 1.81404 * 109.47283 * 179.97438 * 6 5 2 8 8 O 1.42101 * 110.54115 * 68.37566 * 7 6 5 9 9 O 1.42101 * 110.54015 * 291.62607 * 7 6 5 10 10 N 1.65600 * 104.44799 * 179.97438 * 7 6 5 11 11 C 1.44575 * 118.64548 * 90.00387 * 10 7 6 12 12 C 1.54867 * 109.59614 * 270.74746 * 11 10 7 13 13 C 1.47094 * 110.32132 * 288.72977 * 12 11 10 14 14 C 1.52569 * 114.20682 * 62.87963 * 13 12 11 15 15 C 1.50698 * 109.48802 * 154.94365 * 14 13 12 16 16 N 1.27946 * 120.00344 * 95.00360 * 15 14 13 17 17 Si 1.86804 * 120.00204 * 274.99937 * 15 14 13 18 18 H 1.48504 * 109.46938 * 0.02562 * 17 15 14 19 19 H 1.48507 * 109.47080 * 120.00012 * 17 15 14 20 20 H 1.48491 * 109.47410 * 240.00023 * 17 15 14 21 21 C 1.51028 * 109.27958 * 274.78244 * 14 13 12 22 22 C 1.47608 * 118.64248 * 270.01785 * 10 7 6 23 23 H 1.09000 * 109.47105 * 300.00125 * 1 2 3 24 24 H 1.09002 * 109.47142 * 59.99878 * 1 2 3 25 25 H 1.08998 * 109.47395 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47119 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47412 * 299.99549 * 3 2 1 28 28 H 1.08999 * 109.47953 * 60.00262 * 3 2 1 29 29 H 1.08998 * 109.47131 * 300.00257 * 4 2 1 30 30 H 1.09002 * 109.46882 * 60.00205 * 4 2 1 31 31 H 1.08996 * 109.46959 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.47030 * 299.99844 * 5 2 1 33 33 H 1.08996 * 109.46905 * 180.02562 * 5 2 1 34 34 H 1.08995 * 109.47289 * 59.99591 * 6 5 2 35 35 H 1.09006 * 109.47245 * 299.99889 * 6 5 2 36 36 H 1.08993 * 109.45266 * 150.70799 * 11 10 7 37 37 H 1.09004 * 109.43057 * 30.76844 * 11 10 7 38 38 H 1.09000 * 109.32579 * 168.46820 * 12 11 10 39 39 H 1.08997 * 109.33054 * 48.98899 * 12 11 10 40 40 H 1.09002 * 108.51267 * 184.05828 * 13 12 11 41 41 H 1.09004 * 108.51274 * 301.70694 * 13 12 11 42 42 H 1.08998 * 109.48741 * 34.87798 * 14 13 12 43 43 H 0.96997 * 120.00564 * 180.02562 * 16 15 14 44 44 H 1.09004 * 109.44531 * 331.90231 * 21 14 13 45 45 H 1.09004 * 109.41469 * 212.21434 * 21 14 13 46 46 H 1.09001 * 108.94789 * 258.53665 * 22 10 7 47 47 H 1.09002 * 108.94538 * 17.16221 * 22 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5211 6 6 1.9740 -2.3207 1.5212 7 16 2.5792 -3.1761 3.0020 8 8 1.9671 -2.6455 4.1695 9 8 3.9866 -3.3596 2.9315 10 7 1.9603 -4.7070 2.8768 11 6 2.7368 -5.7144 2.1894 12 6 2.3863 -5.7006 0.6810 13 6 1.0356 -6.2416 0.4654 14 6 -0.0764 -5.4266 1.1188 15 6 -1.3691 -5.6562 0.3791 16 7 -2.1939 -6.5427 0.7923 17 14 -1.7674 -4.6463 -1.1411 18 1 -0.6582 -3.6958 -1.4086 19 1 -1.9351 -5.5512 -2.3066 20 1 -3.0252 -3.8895 -0.9171 21 6 -0.2357 -5.8627 2.5560 22 6 0.6385 -4.9866 3.4713 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.5740 1.7564 -0.0005 27 1 2.1207 2.2702 -0.8900 28 1 2.1207 2.2703 0.8900 29 1 2.1206 -1.9059 -1.5211 30 1 2.1206 -0.3644 -2.4111 31 1 3.5739 -0.8779 -1.5213 32 1 2.1206 -0.3644 2.4111 33 1 3.5739 -0.8779 1.5214 34 1 2.3372 -2.8345 0.6312 35 1 0.8839 -2.3207 1.5212 36 1 2.5087 -6.6954 2.6061 37 1 3.7986 -5.5036 2.3173 38 1 3.1095 -6.3084 0.1371 39 1 2.4282 -4.6765 0.3102 40 1 0.8477 -6.2859 -0.6074 41 1 1.0013 -7.2557 0.8638 42 1 0.1801 -4.3678 1.0836 43 1 -3.0258 -6.6907 0.3160 44 1 0.0685 -6.9047 2.6548 45 1 -1.2804 -5.7636 2.8510 46 1 0.7797 -5.4995 4.4227 47 1 0.1253 -4.0423 3.6530 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195062441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:00 Heat of formation + Delta-G solvation = -90.782533 kcal Electronic energy + Delta-G solvation = -25295.443108 eV Core-core repulsion = 21956.436849 eV Total energy + Delta-G solvation = -3339.006260 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.18085 -38.25607 -37.05882 -36.75483 -34.27880 -33.82785 -33.01470 -29.35274 -28.30219 -28.25678 -27.69949 -26.49147 -24.63540 -22.87794 -21.88980 -20.31972 -19.56230 -18.69528 -17.86553 -17.46106 -17.21229 -16.17253 -16.01597 -15.50819 -15.27378 -14.68350 -14.61314 -14.45789 -14.41512 -14.04427 -13.86725 -13.82185 -13.77206 -13.48133 -13.44766 -13.25409 -13.19177 -13.13621 -13.08405 -13.04454 -12.97067 -12.91276 -12.35317 -12.28130 -12.27224 -12.15556 -11.76230 -11.69910 -11.57321 -11.38871 -11.11810 -10.72542 -10.66780 -10.52577 -9.81944 -9.70654 -0.72062 0.87184 1.13456 1.47411 1.67715 1.76858 1.85071 1.89744 1.99323 2.05201 2.70671 2.93869 3.15900 3.53211 3.58957 3.77327 3.89001 3.98075 4.09378 4.21376 4.24646 4.31588 4.51620 4.57527 4.69887 4.78758 4.83685 4.84001 4.86985 4.89801 4.90410 4.93196 4.93426 4.94783 4.96982 5.10428 5.15186 5.23653 5.27916 5.33315 5.37909 5.44851 5.55533 5.60577 5.69540 5.73122 5.82689 6.97939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.471 4.471 2 Si 1.089 2.911 3 C -0.475 4.475 4 C -0.467 4.467 5 C -0.438 4.438 6 C -0.605 4.605 7 S 2.585 3.415 8 O -0.997 6.997 9 O -0.993 6.993 10 N -0.991 5.991 11 C 0.105 3.895 12 C -0.144 4.144 13 C -0.106 4.106 14 C -0.066 4.066 15 C 0.003 3.997 16 N -0.649 5.649 17 Si 0.932 3.068 18 H -0.202 1.202 19 H -0.259 1.259 20 H -0.257 1.257 21 C -0.105 4.105 22 C 0.116 3.884 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.106 0.894 43 H 0.339 0.661 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.255 0.070 -6.320 6.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.578 4.578 2 Si 1.279 2.721 3 C -0.581 4.581 4 C -0.574 4.574 5 C -0.522 4.522 6 C -0.738 4.738 7 S 2.684 3.316 8 O -0.988 6.988 9 O -0.984 6.984 10 N -0.828 5.828 11 C -0.021 4.021 12 C -0.183 4.183 13 C -0.145 4.145 14 C -0.085 4.085 15 C -0.245 4.245 16 N -0.262 5.262 17 Si 0.748 3.252 18 H -0.123 1.123 19 H -0.183 1.183 20 H -0.182 1.182 21 C -0.144 4.144 22 C -0.008 4.008 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.183 0.817 35 H 0.182 0.818 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.124 0.876 43 H 0.156 0.844 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.891 0.112 -5.445 5.765 hybrid contribution -0.772 0.000 -0.627 0.995 sum -2.663 0.112 -6.072 6.631 Atomic orbital electron populations 1.26354 1.21351 1.05267 1.04815 0.77982 0.65815 0.64535 0.63724 1.26410 1.06512 1.20671 1.04508 1.26310 1.06660 1.08935 1.15543 1.26320 1.07338 0.98406 1.20092 1.30278 1.14662 1.08280 1.20567 1.05711 0.73962 0.74107 0.77840 1.93538 1.78356 1.79694 1.47196 1.93526 1.31540 1.84957 1.88341 1.57062 1.29066 1.26348 1.70308 1.21562 0.95278 0.93092 0.92149 1.21458 0.97618 1.03395 0.95872 1.20358 0.93047 0.99621 1.01435 1.20234 0.91469 1.02187 0.94579 1.30476 0.96039 0.95730 1.02275 1.68188 1.07112 1.16841 1.34022 0.85685 0.83023 0.80629 0.75896 1.12279 1.18290 1.18152 1.21647 0.99824 0.99720 0.93245 1.21825 0.81369 1.01517 0.96133 0.91079 0.90942 0.90119 0.91332 0.91074 0.91396 0.90002 0.91029 0.91057 0.88878 0.88770 0.81680 0.81785 0.89087 0.89785 0.88552 0.90416 0.90789 0.91617 0.87649 0.84372 0.91252 0.90097 0.91765 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 3.48 8.65 113.37 0.98 4.46 16 2 Si 1.09 -9.33 12.19 68.60 0.84 -8.50 16 3 C -0.48 2.13 8.65 113.37 0.98 3.11 16 4 C -0.47 3.61 8.65 113.37 0.98 4.59 16 5 C -0.44 2.39 4.46 71.98 0.32 2.71 16 6 C -0.61 4.12 4.96 71.98 0.36 4.48 16 7 S 2.59 6.87 5.31 -56.49 -0.30 6.57 16 8 O -1.00 -10.09 16.70 -127.65 -2.13 -12.23 16 9 O -0.99 -9.48 16.42 -127.65 -2.10 -11.58 16 10 N -0.99 1.43 2.46 -512.39 -1.26 0.17 16 11 C 0.10 -0.38 5.60 87.38 0.49 0.11 16 12 C -0.14 1.19 5.74 29.40 0.17 1.36 16 13 C -0.11 0.80 4.62 28.61 0.13 0.93 16 14 C -0.07 0.41 1.73 -12.33 -0.02 0.39 16 15 C 0.00 -0.02 4.64 88.67 0.41 0.40 16 16 N -0.65 0.94 12.49 24.11 0.30 1.24 16 17 Si 0.93 -5.62 29.05 68.60 1.99 -3.62 16 18 H -0.20 1.96 7.11 99.48 0.71 2.67 16 19 H -0.26 0.77 7.11 99.48 0.71 1.47 16 20 H -0.26 0.79 7.11 99.48 0.71 1.50 16 21 C -0.10 0.41 4.80 30.27 0.15 0.55 16 22 C 0.12 -0.26 5.90 86.49 0.51 0.25 16 23 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 24 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 25 H 0.08 -0.78 7.79 -2.39 -0.02 -0.80 16 26 H 0.07 -0.27 7.96 -2.38 -0.02 -0.29 16 27 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 28 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 29 H 0.08 -0.81 7.79 -2.39 -0.02 -0.83 16 30 H 0.07 -0.51 7.96 -2.39 -0.02 -0.53 16 31 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 32 H 0.09 -0.47 7.96 -2.39 -0.02 -0.49 16 33 H 0.09 -0.49 7.96 -2.39 -0.02 -0.51 16 34 H 0.17 -2.09 5.89 -2.39 -0.01 -2.10 16 35 H 0.16 -2.09 7.19 -2.39 -0.02 -2.11 16 36 H 0.09 -0.42 8.06 -2.39 -0.02 -0.44 16 37 H 0.08 -0.09 6.75 -2.38 -0.02 -0.10 16 38 H 0.10 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.08 -0.88 6.06 -2.39 -0.01 -0.90 16 40 H 0.07 -0.69 7.39 -2.39 -0.02 -0.71 16 41 H 0.07 -0.38 7.35 -2.38 -0.02 -0.40 16 42 H 0.11 -1.12 6.10 -2.39 -0.01 -1.14 16 43 H 0.34 -1.18 8.23 -92.71 -0.76 -1.94 16 44 H 0.07 -0.18 7.31 -2.38 -0.02 -0.20 16 45 H 0.08 -0.19 7.24 -2.38 -0.02 -0.21 16 46 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.09 -0.28 7.20 -2.39 -0.02 -0.30 16 Total: 0.00 -19.86 372.64 3.73 -16.13 By element: Atomic # 1 Polarization: -12.45 SS G_CDS: 0.93 Total: -11.52 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 5.46 Total: 23.33 kcal Atomic # 7 Polarization: 2.37 SS G_CDS: -0.96 Total: 1.41 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -4.23 Total: -23.81 kcal Atomic # 14 Polarization: -14.95 SS G_CDS: 2.83 Total: -12.12 kcal Atomic # 16 Polarization: 6.87 SS G_CDS: -0.30 Total: 6.57 kcal Total: -19.86 3.73 -16.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195062441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.650 kcal (2) G-P(sol) polarization free energy of solvation -19.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds