Wall clock time and date at job start Tue Mar 31 2020 12:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86304 * 109.47010 * 2 1 4 4 C 1.86302 * 109.46978 * 240.00344 * 2 1 3 5 5 C 1.86296 * 109.47491 * 120.00164 * 2 1 3 6 6 C 1.52998 * 109.47008 * 59.99791 * 5 2 1 7 7 S 1.81406 * 109.47331 * 180.02562 * 6 5 2 8 8 O 1.42100 * 110.54245 * 68.37689 * 7 6 5 9 9 O 1.42102 * 110.54147 * 291.63193 * 7 6 5 10 10 N 1.65596 * 104.45172 * 180.02562 * 7 6 5 11 11 C 1.46501 * 120.00145 * 65.00040 * 10 7 6 12 12 H 1.09002 * 109.40935 * 25.13732 * 11 10 7 13 13 C 1.52957 * 109.41368 * 145.00154 * 11 10 7 14 14 C 1.53237 * 109.41228 * 183.62977 * 13 11 10 15 15 C 1.51269 * 108.53262 * 305.38894 * 14 13 11 16 16 C 1.37876 * 120.83764 * 231.34937 * 15 14 13 17 17 N 1.31509 * 120.00059 * 348.89299 * 16 15 14 18 18 Si 1.86809 * 119.99886 * 168.89600 * 16 15 14 19 19 H 1.48501 * 109.47139 * 354.65567 * 18 16 15 20 20 H 1.48499 * 109.47030 * 114.65981 * 18 16 15 21 21 H 1.48505 * 109.46834 * 234.65955 * 18 16 15 22 22 C 1.51274 * 118.31273 * 51.32993 * 15 14 13 23 23 C 1.52962 * 109.35671 * 265.32062 * 11 10 7 24 24 H 1.09005 * 109.46853 * 299.99580 * 1 2 3 25 25 H 1.09001 * 109.47275 * 59.99788 * 1 2 3 26 26 H 1.09003 * 109.46851 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46887 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47526 * 300.00104 * 3 2 1 29 29 H 1.09005 * 109.46970 * 60.00491 * 3 2 1 30 30 H 1.08996 * 109.47311 * 299.99431 * 4 2 1 31 31 H 1.08992 * 109.47188 * 60.00123 * 4 2 1 32 32 H 1.09010 * 109.46833 * 179.97438 * 4 2 1 33 33 H 1.09005 * 109.47281 * 299.99993 * 5 2 1 34 34 H 1.08997 * 109.47500 * 179.97438 * 5 2 1 35 35 H 1.09002 * 109.46907 * 60.00511 * 6 5 2 36 36 H 1.09003 * 109.47369 * 300.00068 * 6 5 2 37 37 H 0.96996 * 120.00140 * 245.00104 * 10 7 6 38 38 H 1.09002 * 109.48066 * 303.61387 * 13 11 10 39 39 H 1.08992 * 109.48120 * 63.64017 * 13 11 10 40 40 H 1.08998 * 109.62860 * 65.09207 * 14 13 11 41 41 H 1.08999 * 109.62152 * 185.66417 * 14 13 11 42 42 H 0.97008 * 119.99689 * 180.02562 * 17 16 15 43 43 H 1.09001 * 109.62492 * 188.94335 * 22 15 14 44 44 H 1.08997 * 109.62371 * 68.37211 * 22 15 14 45 45 H 1.09003 * 109.48212 * 296.31151 * 23 11 10 46 46 H 1.09001 * 109.48266 * 56.34676 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4839 -0.8782 -1.5212 5 6 2.4841 -0.8782 1.5210 6 6 1.9741 -2.3207 1.5210 7 16 2.5782 -3.1757 3.0025 8 8 1.9651 -2.6450 4.1694 9 8 3.9856 -3.3591 2.9333 10 7 1.9606 -4.7071 2.8766 11 6 2.3908 -5.5829 1.7838 12 1 3.3807 -5.2784 1.4438 13 6 2.4464 -7.0279 2.2821 14 6 2.9828 -7.9311 1.1665 15 6 2.1307 -7.7293 -0.0670 16 6 1.5817 -8.8059 -0.7307 17 7 1.9666 -10.0277 -0.4331 18 14 0.2914 -8.5290 -2.0528 19 1 -0.0596 -7.0871 -2.1077 20 1 0.8306 -8.9578 -3.3683 21 1 -0.9228 -9.3221 -1.7332 22 6 1.8958 -6.3163 -0.5534 23 6 1.3988 -5.4719 0.6247 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.5740 1.7565 0.0005 28 1 2.1207 2.2704 -0.8899 29 1 2.1207 2.2703 0.8901 30 1 2.1207 -1.9058 -1.5213 31 1 2.1206 -0.3643 -2.4111 32 1 3.5740 -0.8777 -1.5214 33 1 2.1208 -0.3644 2.4111 34 1 3.5740 -0.8786 1.5208 35 1 2.3374 -2.8345 0.6310 36 1 0.8840 -2.3207 1.5211 37 1 1.3140 -5.0242 3.5263 38 1 3.1060 -7.0887 3.1478 39 1 1.4454 -7.3539 2.5642 40 1 4.0163 -7.6649 0.9449 41 1 2.9297 -8.9731 1.4819 42 1 1.5806 -10.7851 -0.9003 43 1 1.1446 -6.3211 -1.3431 44 1 2.8287 -5.9004 -0.9341 45 1 0.4224 -5.8348 0.9458 46 1 1.3159 -4.4299 0.3157 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195088000.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:14 Heat of formation + Delta-G solvation = -154.573593 kcal Electronic energy + Delta-G solvation = -23817.058427 eV Core-core repulsion = 20488.941719 eV Total energy + Delta-G solvation = -3328.116708 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.13923 -38.04782 -36.96573 -35.35400 -33.96390 -32.98070 -31.40501 -29.31577 -28.55527 -28.24795 -28.22473 -24.64006 -23.76215 -23.15626 -21.26843 -20.18706 -18.80412 -17.93672 -17.38261 -17.15700 -16.36738 -16.16483 -15.30436 -14.98968 -14.62248 -14.34113 -14.22337 -14.03548 -14.00369 -13.93409 -13.78707 -13.75538 -13.40723 -13.20440 -13.14673 -13.07255 -13.05699 -13.03396 -12.91192 -12.74706 -12.64812 -12.34069 -12.27148 -12.17898 -11.82896 -11.77075 -11.22662 -10.97745 -10.69771 -10.66902 -10.63299 -10.47766 -10.36560 -9.94985 -8.12785 -6.05296 -0.62774 1.43153 1.47278 1.55582 1.83108 1.88971 2.07207 2.08592 2.46316 2.74403 2.91616 3.15186 3.31045 3.79796 3.95683 4.02254 4.23982 4.47847 4.55163 4.67658 4.76735 4.82192 4.90033 4.90505 4.93033 4.94238 4.95982 4.96761 5.00404 5.06489 5.13695 5.17813 5.31229 5.37766 5.52403 5.64658 5.67387 5.69516 5.73972 5.75781 5.83427 5.88109 6.22609 6.40379 7.00988 7.52158 8.98589 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.004253 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.536367 B = 6581.696427 C = 8001.448030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.095 2.905 3 C -0.461 4.461 4 C -0.476 4.476 5 C -0.442 4.442 6 C -0.599 4.599 7 S 2.600 3.400 8 O -0.997 6.997 9 O -1.004 7.004 10 N -1.114 6.114 11 C 0.162 3.838 12 H 0.076 0.924 13 C -0.104 4.104 14 C 0.006 3.994 15 C -0.498 4.498 16 C 0.018 3.982 17 N -0.934 5.934 18 Si 0.934 3.066 19 H -0.225 1.225 20 H -0.289 1.289 21 H -0.293 1.293 22 C -0.031 4.031 23 C -0.128 4.128 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.152 0.848 36 H 0.166 0.834 37 H 0.419 0.581 38 H 0.044 0.956 39 H 0.055 0.945 40 H -0.004 1.004 41 H 0.022 0.978 42 H 0.260 0.740 43 H 0.050 0.950 44 H 0.025 0.975 45 H 0.063 0.937 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.126 22.662 -0.380 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.285 2.715 3 C -0.569 4.569 4 C -0.582 4.582 5 C -0.525 4.525 6 C -0.732 4.732 7 S 2.698 3.302 8 O -0.988 6.988 9 O -0.994 6.994 10 N -0.872 5.872 11 C 0.056 3.944 12 H 0.094 0.906 13 C -0.144 4.144 14 C -0.032 4.032 15 C -0.517 4.517 16 C -0.180 4.180 17 N -0.574 5.574 18 Si 0.760 3.240 19 H -0.148 1.148 20 H -0.215 1.215 21 H -0.220 1.220 22 C -0.069 4.069 23 C -0.167 4.167 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.170 0.830 36 H 0.184 0.816 37 H 0.254 0.746 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.015 0.985 41 H 0.040 0.960 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.082 0.918 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.428 22.813 0.251 23.070 hybrid contribution -0.822 -1.234 -0.647 1.617 sum -4.249 21.579 -0.396 21.997 Atomic orbital electron populations 1.26310 1.21289 1.04889 1.04891 0.77903 0.65831 0.65055 0.62666 1.26218 1.06541 1.19138 1.04964 1.26449 1.06514 1.08647 1.16618 1.26448 1.07306 0.97824 1.20876 1.30162 1.14674 1.08510 1.19866 1.05170 0.74028 0.73592 0.77408 1.93516 1.78269 1.79414 1.47602 1.93527 1.32671 1.85063 1.88159 1.55523 1.60828 1.31166 1.39687 1.20638 0.97536 0.90330 0.85906 0.90609 1.21728 1.00490 0.94420 0.97730 1.19332 0.94440 0.95550 0.93857 1.20671 1.29208 0.91389 1.10410 1.25691 0.98705 0.94554 0.99018 1.70059 1.43780 0.99361 1.44179 0.85882 0.79318 0.80073 0.78742 1.14800 1.21531 1.21966 1.20002 0.97641 0.93758 0.95482 1.22189 0.98948 1.00046 0.95498 0.90748 0.90688 0.91005 0.91111 0.90548 0.90737 0.91317 0.90736 0.91372 0.88211 0.88884 0.82983 0.81610 0.74605 0.93745 0.92637 0.98535 0.95974 0.93060 0.93168 0.95625 0.91846 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -4.99 8.65 113.37 0.98 -4.01 16 2 Si 1.10 10.68 12.19 68.60 0.84 11.52 16 3 C -0.46 -4.54 8.65 113.37 0.98 -3.55 16 4 C -0.48 -6.41 8.65 113.37 0.98 -5.43 16 5 C -0.44 -6.50 4.46 71.98 0.32 -6.18 16 6 C -0.60 -10.50 4.49 71.98 0.32 -10.18 16 7 S 2.60 70.74 5.44 -56.49 -0.31 70.43 16 8 O -1.00 -31.52 18.08 -127.65 -2.31 -33.82 16 9 O -1.00 -35.48 17.39 -127.65 -2.22 -37.69 16 10 N -1.11 -31.17 5.35 -169.50 -0.91 -32.08 16 11 C 0.16 5.50 2.59 44.96 0.12 5.61 16 12 H 0.08 2.68 7.47 -2.39 -0.02 2.66 16 13 C -0.10 -4.18 5.46 30.66 0.17 -4.01 16 14 C 0.01 0.32 5.93 30.11 0.18 0.50 16 15 C -0.50 -24.78 5.48 -16.17 -0.09 -24.87 16 16 C 0.02 0.96 5.44 84.66 0.46 1.42 16 17 N -0.93 -54.16 12.82 21.45 0.27 -53.89 16 18 Si 0.93 40.33 27.95 68.60 1.92 42.25 16 19 H -0.22 -8.47 5.58 99.48 0.56 -7.92 16 20 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 22 C -0.03 -1.24 5.65 30.11 0.17 -1.07 16 23 C -0.13 -4.09 5.51 30.66 0.17 -3.92 16 24 H 0.07 0.74 7.96 -2.38 -0.02 0.72 16 25 H 0.07 0.74 7.96 -2.39 -0.02 0.72 16 26 H 0.07 0.79 7.79 -2.39 -0.02 0.78 16 27 H 0.07 0.71 7.96 -2.39 -0.02 0.69 16 28 H 0.08 0.67 7.96 -2.39 -0.02 0.66 16 29 H 0.07 0.68 7.96 -2.38 -0.02 0.66 16 30 H 0.07 1.01 7.79 -2.39 -0.02 0.99 16 31 H 0.07 0.90 7.96 -2.39 -0.02 0.88 16 32 H 0.07 0.95 7.96 -2.38 -0.02 0.93 16 33 H 0.10 1.29 7.96 -2.38 -0.02 1.27 16 34 H 0.09 1.37 7.96 -2.39 -0.02 1.35 16 35 H 0.15 2.36 6.47 -2.39 -0.02 2.34 16 36 H 0.17 1.93 7.79 -2.39 -0.02 1.91 16 37 H 0.42 10.47 8.80 -96.75 -0.85 9.62 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.02 1.21 7.19 -2.39 -0.02 1.19 16 42 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 43 H 0.05 1.94 4.36 -2.39 -0.01 1.93 16 44 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.08 1.86 5.68 -2.39 -0.01 1.85 16 Total: -1.00 -71.57 374.01 2.00 -69.57 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -0.05 Total: 19.40 kcal Atomic # 6 Polarization: -60.45 SS G_CDS: 4.76 Total: -55.69 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -0.63 Total: -85.97 kcal Atomic # 8 Polarization: -66.99 SS G_CDS: -4.53 Total: -71.52 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.75 Total: 53.77 kcal Atomic # 16 Polarization: 70.74 SS G_CDS: -0.31 Total: 70.43 kcal Total: -71.57 2.00 -69.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195088000.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.002 kcal (2) G-P(sol) polarization free energy of solvation -71.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds