Wall clock time and date at job start Tue Mar 31 2020 12:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35892 * 117.00196 * 2 1 4 4 C 1.37684 * 120.12367 * 0.02562 * 3 2 1 5 5 C 1.39075 * 120.88204 * 180.02562 * 4 3 2 6 6 C 1.37958 * 120.80087 * 0.24890 * 5 4 3 7 7 N 1.39370 * 120.17761 * 179.72319 * 6 5 4 8 8 C 1.38532 * 119.99935 * 259.35396 * 7 6 5 9 9 C 1.38881 * 120.30744 * 3.62174 * 8 7 6 10 10 C 1.38058 * 120.01655 * 180.02562 * 9 8 7 11 11 C 1.38955 * 120.64470 * 0.02562 * 10 9 8 12 12 C 1.36401 * 120.61758 * 0.02562 * 11 10 9 13 13 C 1.40747 * 119.95325 * 359.68213 * 12 11 10 14 14 C 1.41000 * 120.31231 * 180.31714 * 13 12 11 15 15 H 1.08003 * 119.99847 * 207.89876 * 14 13 12 16 16 C 1.39839 * 119.99832 * 27.89586 * 14 13 12 17 17 N 1.30926 * 120.00153 * 12.10180 * 16 14 13 18 18 Si 1.86810 * 119.99888 * 192.10170 * 16 14 13 19 19 H 1.48502 * 109.46675 * 90.00213 * 18 16 14 20 20 H 1.48497 * 109.47172 * 210.00013 * 18 16 14 21 21 H 1.48497 * 109.46733 * 330.00290 * 18 16 14 22 22 C 1.41159 * 119.64426 * 359.50478 * 6 5 4 23 23 C 1.40355 * 121.17277 * 180.20262 * 22 6 5 24 24 C 1.36188 * 119.68686 * 180.25582 * 23 22 6 25 25 C 1.39324 * 120.94727 * 0.04043 * 24 23 22 26 26 C 1.36158 * 120.94831 * 359.97438 * 25 24 23 27 27 C 1.40466 * 119.67459 * 0.02562 * 26 25 24 28 28 H 1.08994 * 109.47167 * 59.99643 * 1 2 3 29 29 H 1.08997 * 109.47666 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47052 * 299.99952 * 1 2 3 31 31 H 1.08002 * 119.55625 * 359.97438 * 4 3 2 32 32 H 1.07992 * 119.59715 * 179.97438 * 5 4 3 33 33 H 0.96993 * 119.99964 * 79.35011 * 7 6 5 34 34 H 1.08005 * 119.98673 * 359.97438 * 9 8 7 35 35 H 1.08006 * 119.67363 * 179.97438 * 10 9 8 36 36 H 1.07998 * 119.69102 * 180.02562 * 11 10 9 37 37 H 1.07999 * 120.02663 * 179.97438 * 12 11 10 38 38 H 0.97000 * 119.99833 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.15806 * 0.29287 * 23 22 6 40 40 H 1.07996 * 119.53015 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.52605 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.15879 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2986 2.3671 0.0005 5 6 1.9136 3.6145 0.0000 6 6 3.2888 3.7242 -0.0062 7 7 3.8914 4.9808 -0.0125 8 6 4.3857 5.5061 -1.1952 9 6 4.2176 4.8200 -2.3910 10 6 4.7131 5.3488 -3.5661 11 6 5.3827 6.5663 -3.5680 12 6 5.5634 7.2616 -2.4085 13 6 5.0634 6.7493 -1.1967 14 6 5.2400 7.4649 0.0053 15 1 5.2858 6.9369 0.9463 16 6 5.3560 8.8582 -0.0212 17 7 5.0673 9.5186 -1.1142 18 14 5.9230 9.7774 1.5031 19 1 7.4026 9.9022 1.4840 20 1 5.3122 11.1308 1.5209 21 1 5.5049 9.0296 2.7161 22 6 4.0823 2.5567 -0.0015 23 6 5.4839 2.6309 -0.0033 24 6 6.2199 1.4851 -0.0040 25 6 5.6018 0.2365 -0.0036 26 6 4.2447 0.1270 -0.0022 27 6 3.4534 1.2875 -0.0015 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2204 2.3046 0.0005 32 1 1.3072 4.5082 0.0000 33 1 3.9646 5.4877 0.8112 34 1 3.6999 3.8722 -2.4014 35 1 4.5797 4.8103 -4.4929 36 1 5.7637 6.9659 -4.4963 37 1 6.0857 8.2069 -2.4210 38 1 5.1474 10.4851 -1.1324 39 1 5.9763 3.5921 -0.0037 40 1 7.2982 1.5451 -0.0050 41 1 6.2079 -0.6574 -0.0037 42 1 3.7789 -0.8474 -0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209925199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:37 Heat of formation + Delta-G solvation = 35.436316 kcal Electronic energy + Delta-G solvation = -25838.577798 eV Core-core repulsion = 22327.359059 eV Total energy + Delta-G solvation = -3511.218739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.62248 -38.70248 -37.82568 -36.08124 -33.95942 -33.49370 -31.25703 -30.24080 -29.54769 -28.63836 -27.69685 -26.47977 -25.00850 -23.10735 -22.73876 -21.59993 -20.71309 -19.79869 -17.95310 -17.40515 -17.21110 -16.72591 -16.24079 -15.84254 -15.76142 -14.95735 -14.86182 -14.20941 -14.01860 -13.75741 -13.26497 -13.24274 -12.97351 -12.83203 -12.59852 -12.44648 -12.19860 -11.80025 -11.76974 -11.62624 -11.30223 -11.08252 -10.97410 -10.82168 -10.68991 -10.59216 -10.40168 -9.58570 -9.48217 -9.26157 -9.14784 -9.07629 -8.46707 -7.32156 -7.20487 -6.68920 -6.33151 -4.17987 0.80423 1.19583 2.28266 2.84358 3.10696 3.12791 3.16335 3.19519 3.22322 3.26160 3.98782 4.29567 4.43127 4.75149 4.83381 4.88427 5.03526 5.07493 5.18937 5.25299 5.31105 5.38358 5.62004 5.64510 5.75553 5.76973 5.98883 6.27291 6.27566 6.31988 6.44292 6.50064 6.52178 6.62059 6.68881 6.78395 6.99010 7.05621 7.17638 7.21149 7.30721 7.39221 7.54310 7.75426 7.87671 8.20108 8.23822 8.47039 8.75698 8.81659 9.00585 9.11115 10.32838 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003791 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.908311 B = 7384.449221 C = 7504.432122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.120 3.880 4 C -0.202 4.202 5 C -0.100 4.100 6 C 0.162 3.838 7 N -0.700 5.700 8 C 0.104 3.896 9 C -0.159 4.159 10 C -0.196 4.196 11 C -0.143 4.143 12 C -0.134 4.134 13 C 0.071 3.929 14 C -0.466 4.466 15 H 0.071 0.929 16 C 0.076 3.924 17 N -0.806 5.806 18 Si 0.905 3.095 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.265 1.265 22 C -0.029 4.029 23 C -0.084 4.084 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.098 4.098 27 C -0.059 4.059 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.405 0.595 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.277 0.723 39 H 0.136 0.864 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.874 -14.247 3.646 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.229 6.229 3 C 0.075 3.925 4 C -0.222 4.222 5 C -0.120 4.120 6 C 0.067 3.933 7 N -0.332 5.332 8 C 0.008 3.992 9 C -0.181 4.181 10 C -0.216 4.216 11 C -0.163 4.163 12 C -0.154 4.154 13 C 0.067 3.933 14 C -0.498 4.498 15 H 0.089 0.911 16 C -0.140 4.140 17 N -0.434 5.434 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.031 4.031 23 C -0.102 4.102 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.116 4.116 27 C -0.060 4.060 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.243 0.757 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.087 0.913 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.852 -14.293 3.492 15.493 hybrid contribution -0.144 0.895 0.829 1.228 sum -4.996 -13.398 4.321 14.938 Atomic orbital electron populations 1.23029 0.78597 1.03600 1.01479 1.85986 1.21108 1.27035 1.88746 1.18854 0.91154 0.84156 0.98359 1.20905 0.99584 0.91808 1.09859 1.21247 0.94427 0.96852 0.99510 1.17351 0.90188 0.85581 1.00180 1.41124 1.67023 1.15575 1.09450 1.17856 1.00383 0.96404 0.84584 1.20081 1.06333 0.99591 0.92125 1.20160 1.07534 0.98050 0.95832 1.20326 1.02800 0.95939 0.97190 1.20874 1.02317 1.00651 0.91584 1.17209 0.91951 0.89956 0.94205 1.19114 1.45725 0.91226 0.93709 0.91110 1.25730 0.93020 0.98099 0.97129 1.69839 1.36532 1.08999 1.27988 0.86371 0.79609 0.78818 0.82172 1.19566 1.20541 1.18937 1.18324 0.94053 0.91576 0.99196 1.21098 0.92422 0.99372 0.97283 1.20883 1.00033 0.92399 1.00533 1.20781 0.94645 0.97509 1.01367 1.20842 0.93655 0.97339 0.99782 1.17285 0.89792 0.93561 1.05410 0.92618 0.88465 0.92682 0.85705 0.85533 0.75678 0.89495 0.89738 0.89795 0.86206 0.91260 0.84646 0.86173 0.86346 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.99 9.71 -19.40 -0.19 -4.18 16 3 C 0.12 1.76 6.70 -38.76 -0.26 1.50 16 4 C -0.20 -2.86 9.01 -39.47 -0.36 -3.22 16 5 C -0.10 -1.64 9.92 -39.37 -0.39 -2.03 16 6 C 0.16 2.95 4.43 -83.43 -0.37 2.58 16 7 N -0.70 -14.19 4.54 -7.81 -0.04 -14.22 16 8 C 0.10 2.44 6.05 -83.32 -0.50 1.93 16 9 C -0.16 -3.66 9.25 -39.41 -0.36 -4.02 16 10 C -0.20 -4.51 10.03 -39.38 -0.40 -4.90 16 11 C -0.14 -3.41 9.96 -39.98 -0.40 -3.81 16 12 C -0.13 -3.46 8.60 -39.30 -0.34 -3.80 16 13 C 0.07 1.83 5.57 -106.62 -0.59 1.23 16 14 C -0.47 -11.79 8.44 -37.94 -0.32 -12.11 16 15 H 0.07 1.69 6.79 -52.48 -0.36 1.34 16 16 C 0.08 1.87 5.23 -17.34 -0.09 1.78 16 17 N -0.81 -20.79 10.85 55.54 0.60 -20.19 16 18 Si 0.90 18.62 29.58 -169.99 -5.03 13.59 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.03 -0.51 5.48 -106.69 -0.58 -1.09 16 23 C -0.08 -1.43 9.38 -39.52 -0.37 -1.80 16 24 C -0.12 -1.74 9.95 -39.92 -0.40 -2.14 16 25 C -0.12 -1.64 9.95 -39.93 -0.40 -2.04 16 26 C -0.10 -1.38 9.56 -39.49 -0.38 -1.76 16 27 C -0.06 -0.95 5.75 -106.73 -0.61 -1.56 16 28 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.42 7.65 -51.93 -0.40 0.02 16 31 H 0.13 1.41 6.23 -52.49 -0.33 1.08 16 32 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 33 H 0.40 8.10 7.11 -40.82 -0.29 7.80 16 34 H 0.09 1.94 6.83 -52.48 -0.36 1.58 16 35 H 0.08 1.76 8.06 -52.48 -0.42 1.33 16 36 H 0.08 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.12 3.22 6.20 -52.49 -0.33 2.89 16 38 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 39 H 0.14 2.52 7.17 -52.49 -0.38 2.14 16 40 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.13 1.55 7.60 -52.49 -0.40 1.15 16 LS Contribution 349.04 15.07 5.26 5.26 Total: -1.00 -28.19 349.04 -10.42 -38.61 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -4.90 Total: 15.16 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: -6.13 Total: -34.03 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.57 Total: -34.41 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.19 Total: -4.18 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.59 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.19 -10.42 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209925199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.049 kcal (2) G-P(sol) polarization free energy of solvation -28.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds