Wall clock time and date at job start Tue Mar 31 2020 12:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35892 * 117.00196 * 2 1 4 4 C 1.37684 * 120.12367 * 0.02562 * 3 2 1 5 5 C 1.39075 * 120.88204 * 180.02562 * 4 3 2 6 6 C 1.37958 * 120.80087 * 0.24890 * 5 4 3 7 7 N 1.39370 * 120.17761 * 179.72319 * 6 5 4 8 8 C 1.38532 * 119.99935 * 259.35396 * 7 6 5 9 9 C 1.38881 * 120.30744 * 3.62174 * 8 7 6 10 10 C 1.38058 * 120.01655 * 180.02562 * 9 8 7 11 11 C 1.38955 * 120.64470 * 0.02562 * 10 9 8 12 12 C 1.36401 * 120.61758 * 0.02562 * 11 10 9 13 13 C 1.40747 * 119.95325 * 359.68213 * 12 11 10 14 14 C 1.41000 * 120.31231 * 180.31714 * 13 12 11 15 15 H 1.08003 * 119.99847 * 207.89876 * 14 13 12 16 16 C 1.39839 * 119.99832 * 27.89586 * 14 13 12 17 17 N 1.30926 * 120.00153 * 12.10180 * 16 14 13 18 18 Si 1.86810 * 119.99888 * 192.10170 * 16 14 13 19 19 H 1.48502 * 109.46675 * 90.00213 * 18 16 14 20 20 H 1.48497 * 109.47172 * 210.00013 * 18 16 14 21 21 H 1.48497 * 109.46733 * 330.00290 * 18 16 14 22 22 C 1.41159 * 119.64426 * 359.50478 * 6 5 4 23 23 C 1.40355 * 121.17277 * 180.20262 * 22 6 5 24 24 C 1.36188 * 119.68686 * 180.25582 * 23 22 6 25 25 C 1.39324 * 120.94727 * 0.04043 * 24 23 22 26 26 C 1.36158 * 120.94831 * 359.97438 * 25 24 23 27 27 C 1.40466 * 119.67459 * 0.02562 * 26 25 24 28 28 H 1.08994 * 109.47167 * 59.99643 * 1 2 3 29 29 H 1.08997 * 109.47666 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47052 * 299.99952 * 1 2 3 31 31 H 1.08002 * 119.55625 * 359.97438 * 4 3 2 32 32 H 1.07992 * 119.59715 * 179.97438 * 5 4 3 33 33 H 0.96993 * 119.99964 * 79.35011 * 7 6 5 34 34 H 1.08005 * 119.98673 * 359.97438 * 9 8 7 35 35 H 1.08006 * 119.67363 * 179.97438 * 10 9 8 36 36 H 1.07998 * 119.69102 * 180.02562 * 11 10 9 37 37 H 1.07999 * 120.02663 * 179.97438 * 12 11 10 38 38 H 0.97000 * 119.99833 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.15806 * 0.29287 * 23 22 6 40 40 H 1.07996 * 119.53015 * 180.02562 * 24 23 22 41 41 H 1.07995 * 119.52605 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.15879 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2986 2.3671 0.0005 5 6 1.9136 3.6145 0.0000 6 6 3.2888 3.7242 -0.0062 7 7 3.8914 4.9808 -0.0125 8 6 4.3857 5.5061 -1.1952 9 6 4.2176 4.8200 -2.3910 10 6 4.7131 5.3488 -3.5661 11 6 5.3827 6.5663 -3.5680 12 6 5.5634 7.2616 -2.4085 13 6 5.0634 6.7493 -1.1967 14 6 5.2400 7.4649 0.0053 15 1 5.2858 6.9369 0.9463 16 6 5.3560 8.8582 -0.0212 17 7 5.0673 9.5186 -1.1142 18 14 5.9230 9.7774 1.5031 19 1 7.4026 9.9022 1.4840 20 1 5.3122 11.1308 1.5209 21 1 5.5049 9.0296 2.7161 22 6 4.0823 2.5567 -0.0015 23 6 5.4839 2.6309 -0.0033 24 6 6.2199 1.4851 -0.0040 25 6 5.6018 0.2365 -0.0036 26 6 4.2447 0.1270 -0.0022 27 6 3.4534 1.2875 -0.0015 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2204 2.3046 0.0005 32 1 1.3072 4.5082 0.0000 33 1 3.9646 5.4877 0.8112 34 1 3.6999 3.8722 -2.4014 35 1 4.5797 4.8103 -4.4929 36 1 5.7637 6.9659 -4.4963 37 1 6.0857 8.2069 -2.4210 38 1 5.1474 10.4851 -1.1324 39 1 5.9763 3.5921 -0.0037 40 1 7.2982 1.5451 -0.0050 41 1 6.2079 -0.6574 -0.0037 42 1 3.7789 -0.8474 -0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209925199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:36 Heat of formation + Delta-G solvation = 23.089847 kcal Electronic energy + Delta-G solvation = -25839.113181 eV Core-core repulsion = 22327.359059 eV Total energy + Delta-G solvation = -3511.754123 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79564 -40.01278 -39.26534 -37.44581 -35.45279 -35.26297 -32.53967 -31.46845 -31.28258 -30.19220 -28.75234 -27.72910 -26.83775 -24.30954 -23.87491 -23.15355 -22.44051 -21.34156 -19.10708 -19.02037 -18.57827 -18.03186 -17.78830 -17.24663 -16.68995 -16.59806 -15.93987 -15.84517 -15.33602 -14.93301 -14.65240 -14.62488 -14.39615 -14.35057 -14.01321 -13.85107 -13.58471 -13.49339 -13.06095 -12.79982 -12.69099 -12.64557 -12.53594 -12.15445 -12.03595 -11.83728 -11.72893 -11.44555 -11.29784 -11.00961 -10.80444 -10.36854 -9.63447 -9.23689 -8.55521 -8.40965 -8.09234 -6.09701 -0.38742 0.02259 1.03615 1.07827 1.31343 1.40611 1.51508 1.54424 2.03656 2.25424 2.26315 2.83704 2.92579 3.13730 3.75716 3.80190 3.90156 4.04533 4.12401 4.17520 4.42645 4.43667 4.47886 4.51495 4.52899 4.61699 4.65563 4.75421 4.78478 4.88954 5.10524 5.14522 5.17029 5.27239 5.31220 5.39208 5.43845 5.47059 5.60983 5.69727 5.78382 5.89325 6.01639 6.04369 6.29366 6.35889 6.39950 6.63394 6.91930 7.00317 7.25019 7.28382 8.49298 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.003791 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.908311 B = 7384.449221 C = 7504.432122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.320 6.320 3 C 0.133 3.867 4 C -0.207 4.207 5 C -0.096 4.096 6 C 0.121 3.879 7 N -0.694 5.694 8 C 0.117 3.883 9 C -0.168 4.168 10 C -0.192 4.192 11 C -0.155 4.155 12 C -0.156 4.156 13 C 0.038 3.962 14 C -0.489 4.489 15 H 0.073 0.927 16 C 0.033 3.967 17 N -0.841 5.841 18 Si 0.976 3.024 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.038 4.038 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.122 4.122 26 C -0.095 4.095 27 C -0.081 4.081 28 H 0.062 0.938 29 H 0.125 0.875 30 H 0.066 0.934 31 H 0.156 0.844 32 H 0.126 0.874 33 H 0.401 0.599 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.281 0.719 39 H 0.107 0.893 40 H 0.140 0.860 41 H 0.156 0.844 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 -17.080 4.299 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.233 6.233 3 C 0.087 3.913 4 C -0.227 4.227 5 C -0.116 4.116 6 C 0.027 3.973 7 N -0.324 5.324 8 C 0.018 3.982 9 C -0.191 4.191 10 C -0.212 4.212 11 C -0.175 4.175 12 C -0.177 4.177 13 C 0.033 3.967 14 C -0.520 4.520 15 H 0.092 0.908 16 C -0.179 4.179 17 N -0.469 5.469 18 Si 0.798 3.202 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.041 4.041 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.113 4.113 27 C -0.082 4.082 28 H 0.081 0.919 29 H 0.143 0.857 30 H 0.084 0.916 31 H 0.174 0.826 32 H 0.144 0.856 33 H 0.238 0.762 34 H 0.113 0.887 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.158 0.842 41 H 0.174 0.826 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.855 -17.167 4.155 18.608 hybrid contribution 0.058 1.518 0.608 1.636 sum -5.797 -15.650 4.763 17.355 Atomic orbital electron populations 1.23406 0.76169 1.05855 1.02359 1.85989 1.23524 1.25745 1.88065 1.18925 0.90934 0.85095 0.96318 1.21105 1.01110 0.90655 1.09791 1.21334 0.93683 0.98011 0.98529 1.17530 0.91047 0.84787 1.03930 1.41035 1.66588 1.16463 1.08278 1.17966 0.98840 0.95467 0.85915 1.20199 1.06849 0.99954 0.92107 1.20476 1.06234 0.97631 0.96872 1.20511 1.03302 0.96372 0.97314 1.20851 1.03475 1.00618 0.92769 1.17518 0.93242 0.91336 0.94566 1.19333 1.46859 0.92043 0.93799 0.90850 1.26534 0.92623 0.98602 1.00097 1.69923 1.37566 1.09426 1.30003 0.85292 0.78974 0.77471 0.78449 1.19270 1.19950 1.18296 1.18349 0.94135 0.92021 0.99552 1.20971 0.92799 0.99241 1.00580 1.21192 1.01048 0.92215 0.98341 1.21149 0.94787 0.98053 1.00024 1.21166 0.94041 0.97545 0.98503 1.17543 0.90938 0.93544 1.06178 0.91891 0.85672 0.91577 0.82642 0.85622 0.76171 0.88746 0.87182 0.87970 0.88051 0.90872 0.87474 0.84206 0.82642 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -7.01 9.71 -92.33 -0.90 -7.91 16 3 C 0.13 3.62 6.70 22.80 0.15 3.77 16 4 C -0.21 -5.48 9.01 22.34 0.20 -5.28 16 5 C -0.10 -3.10 9.92 22.40 0.22 -2.88 16 6 C 0.12 4.49 4.43 38.59 0.17 4.66 16 7 N -0.69 -29.42 4.54 -178.64 -0.81 -30.23 16 8 C 0.12 5.67 6.05 39.07 0.24 5.90 16 9 C -0.17 -7.88 9.25 22.38 0.21 -7.67 16 10 C -0.19 -8.88 10.03 22.40 0.22 -8.66 16 11 C -0.16 -7.59 9.96 22.01 0.22 -7.37 16 12 C -0.16 -8.47 8.60 22.45 0.19 -8.28 16 13 C 0.04 2.04 5.57 -21.16 -0.12 1.92 16 14 C -0.49 -25.85 8.44 23.33 0.20 -25.65 16 15 H 0.07 3.69 6.79 -2.91 -0.02 3.67 16 16 C 0.03 1.70 5.23 85.22 0.45 2.15 16 17 N -0.84 -45.08 10.85 21.81 0.24 -44.84 16 18 Si 0.98 39.13 29.58 68.60 2.03 41.16 16 19 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 20 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 21 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 22 C -0.04 -1.35 5.48 -21.21 -0.12 -1.47 16 23 C -0.12 -4.11 9.38 22.31 0.21 -3.90 16 24 C -0.11 -3.05 9.95 22.05 0.22 -2.83 16 25 C -0.12 -2.85 9.95 22.05 0.22 -2.63 16 26 C -0.09 -2.40 9.56 22.33 0.21 -2.18 16 27 C -0.08 -2.47 5.75 -21.23 -0.12 -2.59 16 28 H 0.06 0.76 7.65 -2.39 -0.02 0.74 16 29 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.75 7.65 -2.38 -0.02 0.73 16 31 H 0.16 3.04 6.23 -2.91 -0.02 3.02 16 32 H 0.13 3.99 8.06 -2.91 -0.02 3.96 16 33 H 0.40 17.01 7.11 -92.71 -0.66 16.35 16 34 H 0.09 4.24 6.83 -2.91 -0.02 4.22 16 35 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.10 5.77 6.20 -2.91 -0.02 5.75 16 38 H 0.28 13.83 8.30 -92.71 -0.77 13.06 16 39 H 0.11 4.27 7.17 -2.91 -0.02 4.24 16 40 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 41 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 42 H 0.15 3.05 7.60 -2.91 -0.02 3.03 16 Total: -1.00 -63.41 349.04 5.05 -58.37 By element: Atomic # 1 Polarization: 44.72 SS G_CDS: 0.40 Total: 45.12 kcal Atomic # 6 Polarization: -65.75 SS G_CDS: 4.09 Total: -61.67 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -0.57 Total: -75.07 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.90 Total: -7.91 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.16 kcal Total: -63.41 5.05 -58.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209925199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.456 kcal (2) G-P(sol) polarization free energy of solvation -63.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds