Wall clock time and date at job start Tue Mar 31 2020 12:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46902 * 109.47274 * 2 1 4 4 C 1.46894 * 109.47758 * 239.99267 * 2 1 3 5 5 C 1.46908 * 109.47135 * 119.99619 * 2 1 3 6 6 C 1.52991 * 109.47018 * 60.95137 * 5 2 1 7 7 H 1.09001 * 109.47201 * 53.60786 * 6 5 2 8 8 C 1.50702 * 109.47371 * 173.60710 * 6 5 2 9 9 H 1.08001 * 120.00136 * 240.00500 * 8 6 5 10 10 C 1.37873 * 119.99686 * 60.00073 * 8 6 5 11 11 N 1.31510 * 120.00369 * 0.02562 * 10 8 6 12 12 Si 1.86806 * 119.99930 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47274 * 90.00033 * 12 10 8 14 14 H 1.48499 * 109.47234 * 210.00352 * 12 10 8 15 15 H 1.48508 * 109.46914 * 329.99869 * 12 10 8 16 16 O 1.42898 * 109.47802 * 293.61041 * 6 5 2 17 17 C 1.35910 * 117.00670 * 156.17104 * 16 6 5 18 18 C 1.38754 * 120.47291 * 356.70777 * 17 16 6 19 19 N 1.31810 * 120.68111 * 180.28783 * 18 17 16 20 20 C 1.31871 * 121.78028 * 359.73436 * 19 18 17 21 21 C 1.38213 * 120.89283 * 359.97438 * 20 19 18 22 22 C 1.38579 * 119.21900 * 0.02562 * 21 20 19 23 23 C 1.50700 * 120.81103 * 179.97438 * 22 21 20 24 24 F 1.39899 * 109.47378 * 359.97438 * 23 22 21 25 25 F 1.39906 * 109.46958 * 239.99928 * 23 22 21 26 26 F 1.39902 * 109.47187 * 120.00061 * 23 22 21 27 27 H 1.09003 * 109.47258 * 292.00921 * 1 2 3 28 28 H 1.09006 * 109.47077 * 52.00686 * 1 2 3 29 29 H 1.08994 * 109.47543 * 172.00256 * 1 2 3 30 30 H 1.08998 * 109.47218 * 179.97438 * 3 2 1 31 31 H 1.09006 * 109.46893 * 299.99139 * 3 2 1 32 32 H 1.08997 * 109.47342 * 59.99823 * 3 2 1 33 33 H 1.09000 * 109.47449 * 300.01057 * 4 2 1 34 34 H 1.09009 * 109.46883 * 59.99981 * 4 2 1 35 35 H 1.08998 * 109.47711 * 180.02562 * 4 2 1 36 36 H 1.09001 * 109.46622 * 300.95548 * 5 2 1 37 37 H 1.08990 * 109.47017 * 180.95794 * 5 2 1 38 38 H 0.97005 * 120.00349 * 179.97438 * 11 10 8 39 39 H 1.07999 * 119.65592 * 0.02562 * 18 17 16 40 40 H 1.08002 * 119.55626 * 180.02562 * 20 19 18 41 41 H 1.08001 * 120.39108 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6926 -1.1992 5 6 1.9586 -0.6925 1.1995 6 6 1.4683 -2.1416 1.1877 7 1 1.7490 -2.6125 0.2456 8 6 2.0969 -2.8940 2.3322 9 1 2.7156 -3.7572 2.1360 10 6 1.8821 -2.4804 3.6297 11 7 1.1284 -1.4295 3.8687 12 14 2.6618 -3.4126 5.0484 13 1 3.9960 -2.8334 5.3476 14 1 1.7943 -3.3034 6.2488 15 1 2.8148 -4.8422 4.6767 16 8 0.0462 -2.1646 1.3264 17 6 -0.6024 -3.2610 0.8528 18 6 0.0984 -4.2676 0.2041 19 7 -0.5273 -5.3301 -0.2619 20 6 -1.8303 -5.4827 -0.1286 21 6 -2.5952 -4.5256 0.5110 22 6 -1.9774 -3.3926 1.0161 23 6 -2.7768 -2.3262 1.7195 24 9 -4.1262 -2.6948 1.7440 25 9 -2.6377 -1.1128 1.0370 26 9 -2.3088 -2.1805 3.0298 27 1 -0.3634 0.3851 0.9528 28 1 -0.3633 0.6326 -0.8099 29 1 -0.3634 -1.0176 -0.1430 30 1 3.0486 1.3850 0.0005 31 1 1.5954 1.8988 -0.8901 32 1 1.5953 1.8989 0.8899 33 1 1.5953 -1.7202 -1.1993 34 1 1.5954 -0.1788 -2.0894 35 1 3.0487 -0.6930 -1.1990 36 1 1.5813 -0.1885 2.0894 37 1 3.0484 -0.6776 1.2082 38 1 0.9770 -1.1387 4.7817 39 1 1.1670 -4.1777 0.0759 40 1 -2.3062 -6.3680 -0.5240 41 1 -3.6618 -4.6591 0.6160 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227710194.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:53 Heat of formation + Delta-G solvation = -37.762155 kcal Electronic energy + Delta-G solvation = -29991.636021 eV Core-core repulsion = 25576.307326 eV Total energy + Delta-G solvation = -4415.328695 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.86890 -48.46528 -48.23260 -43.49828 -41.45186 -38.95692 -35.06879 -33.96659 -31.99545 -31.06582 -30.45358 -30.26992 -28.03174 -27.40161 -25.40198 -24.48548 -23.51551 -22.48809 -19.94331 -19.36670 -19.27989 -19.15858 -18.88404 -18.49550 -18.31636 -17.51073 -17.11495 -16.39292 -16.20035 -15.93290 -15.61136 -15.21564 -15.10661 -15.02998 -14.90475 -14.77337 -14.56222 -14.47471 -14.45318 -14.40538 -14.18993 -14.09199 -13.99590 -13.82471 -13.61248 -13.30885 -13.01471 -12.97182 -12.67262 -12.24109 -11.95229 -11.49029 -11.19641 -10.81586 -10.44661 -10.28102 -9.26964 -7.90471 -6.14935 -0.09343 0.21209 0.21996 1.83217 1.98439 2.08931 2.19692 2.21789 2.23803 2.28090 2.38792 2.69878 2.91489 2.93606 3.06870 3.11145 3.17330 3.31818 3.39524 3.50520 3.54887 3.60106 3.65142 3.67586 3.69873 3.70527 3.84701 3.92675 4.00123 4.10317 4.14874 4.20007 4.48268 4.53509 4.69836 4.88253 5.00974 5.51887 5.89493 6.11078 6.37582 6.95920 7.03074 7.72118 9.11637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.275 5.275 3 C -0.040 4.040 4 C -0.047 4.047 5 C 0.000 4.000 6 C 0.188 3.812 7 H 0.051 0.949 8 C -0.571 4.571 9 H 0.083 0.917 10 C 0.094 3.906 11 N -0.851 5.851 12 Si 0.904 3.096 13 H -0.270 1.270 14 H -0.276 1.276 15 H -0.266 1.266 16 O -0.293 6.293 17 C 0.156 3.844 18 C 0.024 3.976 19 N -0.427 5.427 20 C 0.046 3.954 21 C -0.088 4.088 22 C -0.195 4.195 23 C 0.521 3.479 24 F -0.181 7.181 25 F -0.182 7.182 26 F -0.157 7.157 27 H 0.123 0.877 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.161 0.839 37 H 0.128 0.872 38 H 0.282 0.718 39 H 0.170 0.830 40 H 0.165 0.835 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.924 9.328 -13.278 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 N 0.067 4.933 3 C -0.182 4.182 4 C -0.189 4.189 5 C -0.118 4.118 6 C 0.134 3.866 7 H 0.068 0.932 8 C -0.607 4.607 9 H 0.101 0.899 10 C -0.118 4.118 11 N -0.483 5.483 12 Si 0.729 3.271 13 H -0.195 1.195 14 H -0.201 1.201 15 H -0.190 1.190 16 O -0.204 6.204 17 C 0.105 3.895 18 C -0.137 4.137 19 N -0.136 5.136 20 C -0.109 4.109 21 C -0.108 4.108 22 C -0.205 4.205 23 C 0.467 3.533 24 F -0.162 7.162 25 F -0.163 7.163 26 F -0.138 7.138 27 H 0.141 0.859 28 H 0.120 0.880 29 H 0.143 0.857 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.178 0.822 37 H 0.146 0.854 38 H 0.092 0.908 39 H 0.187 0.813 40 H 0.182 0.818 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.239 9.058 -13.419 16.344 hybrid contribution -0.201 0.220 1.528 1.557 sum 2.038 9.278 -11.890 15.219 Atomic orbital electron populations 1.24366 0.76165 1.09486 1.08187 1.46434 1.15687 1.14736 1.16472 1.24009 1.04940 0.80924 1.08301 1.24072 1.05140 1.02292 0.87417 1.24852 1.03272 0.96969 0.86700 1.20499 0.77052 0.90419 0.98614 0.93178 1.21212 1.34285 1.15490 0.89689 0.89926 1.25040 0.92635 0.94345 0.99758 1.69595 1.32637 1.22901 1.23205 0.86307 0.79474 0.80753 0.80529 1.19544 1.20108 1.18973 1.86414 1.24686 1.34910 1.74418 1.19530 0.90313 0.89368 0.90275 1.23068 1.01108 0.90107 0.99389 1.67542 1.10748 1.20741 1.14534 1.22626 0.89235 0.99456 0.99618 1.21933 1.02226 0.91811 0.94834 1.19840 0.92768 0.98714 1.09189 1.17862 0.77064 0.80505 0.77918 1.93167 1.35180 1.91399 1.96496 1.93132 1.95597 1.47669 1.79943 1.93334 1.88029 1.95808 1.36609 0.85867 0.87989 0.85671 0.86716 0.87121 0.86411 0.86633 0.86980 0.86369 0.82166 0.85428 0.90764 0.81272 0.81761 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.34 6.45 60.06 0.39 0.73 16 2 N -0.27 2.80 0.05 -395.63 -0.02 2.78 16 3 C -0.04 0.51 8.01 60.07 0.48 0.99 16 4 C -0.05 0.56 7.64 60.06 0.46 1.02 16 5 C 0.00 0.00 3.48 -3.82 -0.01 -0.01 16 6 C 0.19 -0.08 1.41 -27.89 -0.04 -0.12 16 7 H 0.05 -0.16 3.77 -51.93 -0.20 -0.35 16 8 C -0.57 -3.06 8.43 -34.44 -0.29 -3.35 16 9 H 0.08 0.54 7.81 -52.49 -0.41 0.13 16 10 C 0.09 0.73 5.24 -17.82 -0.09 0.63 16 11 N -0.85 -6.53 10.95 55.43 0.61 -5.93 16 12 Si 0.90 7.63 29.54 -169.99 -5.02 2.61 16 13 H -0.27 -2.32 7.11 56.52 0.40 -1.92 16 14 H -0.28 -2.76 7.11 56.52 0.40 -2.36 16 15 H -0.27 -2.53 7.11 56.52 0.40 -2.13 16 16 O -0.29 -0.34 5.25 -19.46 -0.10 -0.45 16 17 C 0.16 0.33 5.86 -39.07 -0.23 0.10 16 18 C 0.02 0.05 10.03 -17.37 -0.17 -0.13 16 19 N -0.43 -1.26 10.35 -13.13 -0.14 -1.39 16 20 C 0.05 0.06 11.18 -17.54 -0.20 -0.14 16 21 C -0.09 -0.10 9.50 -39.46 -0.37 -0.47 16 22 C -0.20 -0.48 5.41 -104.18 -0.56 -1.05 16 23 C 0.52 1.63 3.02 36.01 0.11 1.74 16 24 F -0.18 -0.56 16.08 2.25 0.04 -0.52 16 25 F -0.18 -0.24 16.10 2.25 0.04 -0.20 16 26 F -0.16 -0.99 17.05 2.25 0.04 -0.96 16 27 H 0.12 -0.76 8.02 -51.93 -0.42 -1.18 16 28 H 0.10 -1.14 8.03 -51.93 -0.42 -1.55 16 29 H 0.13 -0.73 4.66 -51.93 -0.24 -0.97 16 30 H 0.11 -1.56 8.14 -51.93 -0.42 -1.98 16 31 H 0.11 -1.60 8.09 -51.93 -0.42 -2.02 16 32 H 0.12 -1.40 8.14 -51.93 -0.42 -1.83 16 33 H 0.12 -1.19 5.94 -51.93 -0.31 -1.50 16 34 H 0.11 -1.56 8.14 -51.92 -0.42 -1.98 16 35 H 0.12 -1.54 8.14 -51.93 -0.42 -1.96 16 36 H 0.16 -0.28 6.20 -51.93 -0.32 -0.60 16 37 H 0.13 -0.77 8.14 -51.93 -0.42 -1.20 16 38 H 0.28 2.45 8.31 -40.82 -0.34 2.11 16 39 H 0.17 0.08 5.78 -52.49 -0.30 -0.22 16 40 H 0.17 -0.22 8.06 -52.49 -0.42 -0.64 16 41 H 0.15 -0.13 7.27 -52.49 -0.38 -0.51 16 LS Contribution 334.99 15.07 5.05 5.05 Total: 0.00 -16.60 334.99 -5.14 -21.73 By element: Atomic # 1 Polarization: -17.58 SS G_CDS: -5.09 Total: -22.67 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -0.54 Total: -0.05 kcal Atomic # 7 Polarization: -4.99 SS G_CDS: 0.45 Total: -4.54 kcal Atomic # 8 Polarization: -0.34 SS G_CDS: -0.10 Total: -0.45 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.11 Total: -1.68 kcal Atomic # 14 Polarization: 7.63 SS G_CDS: -5.02 Total: 2.61 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -16.60 -5.14 -21.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227710194.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.029 kcal (2) G-P(sol) polarization free energy of solvation -16.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds