Wall clock time and date at job start Tue Mar 31 2020 12:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 113.99626 * 2 1 4 4 C 1.50704 * 109.46733 * 180.02562 * 3 2 1 5 5 C 1.37972 * 120.07684 * 0.28119 * 4 3 2 6 6 C 1.38353 * 120.14258 * 180.25620 * 5 4 3 7 7 C 1.38394 * 120.29004 * 359.73479 * 6 5 4 8 8 C 1.37923 * 120.14728 * 359.97438 * 7 6 5 9 9 C 1.39571 * 120.06920 * 180.02562 * 4 3 2 10 10 C 1.47950 * 120.14389 * 0.02562 * 9 4 3 11 11 N 1.31554 * 119.44586 * 308.94235 * 10 9 4 12 12 C 1.33655 * 121.74705 * 180.02562 * 11 10 9 13 13 C 1.40482 * 120.98235 * 180.02562 * 12 11 10 14 14 C 1.36251 * 119.70597 * 179.97438 * 13 12 11 15 15 C 1.39157 * 121.74914 * 359.97438 * 14 13 12 16 16 C 1.36133 * 121.47285 * 0.02562 * 15 14 13 17 17 C 1.40782 * 119.46765 * 359.97438 * 16 15 14 18 18 C 1.40013 * 121.41118 * 180.02562 * 17 16 15 19 19 C 1.40386 * 117.96324 * 179.97438 * 18 17 16 20 20 C 1.40846 * 120.41609 * 180.02562 * 19 18 17 21 21 H 1.08002 * 120.00314 * 148.99262 * 20 19 18 22 22 C 1.40094 * 120.00026 * 329.00101 * 20 19 18 23 23 N 1.30767 * 119.99572 * 348.25913 * 22 20 19 24 24 Si 1.86794 * 120.00387 * 168.26603 * 22 20 19 25 25 H 1.48509 * 109.47083 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47663 * 119.99637 * 24 22 20 27 27 H 1.48500 * 109.47099 * 239.99828 * 24 22 20 28 28 H 1.09000 * 109.47328 * 59.99983 * 1 2 3 29 29 H 1.09012 * 109.47027 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47554 * 299.99708 * 1 2 3 31 31 H 1.08998 * 109.47607 * 60.00568 * 3 2 1 32 32 H 1.09001 * 109.47406 * 299.99873 * 3 2 1 33 33 H 1.07995 * 119.92612 * 359.97438 * 5 4 3 34 34 H 1.08001 * 119.85154 * 179.76472 * 6 5 4 35 35 H 1.08002 * 119.92654 * 179.97438 * 7 6 5 36 36 H 1.08002 * 120.07695 * 180.02562 * 8 7 6 37 37 H 1.08007 * 120.14456 * 0.25427 * 13 12 11 38 38 H 1.07993 * 119.12107 * 180.02562 * 14 13 12 39 39 H 1.07998 * 119.26257 * 179.97438 * 15 14 13 40 40 H 1.07997 * 120.26427 * 179.97438 * 16 15 14 41 41 H 1.07997 * 121.02052 * 359.97438 * 18 17 16 42 42 H 0.97005 * 119.99625 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 6 4.1074 -0.0583 -0.0070 6 6 5.4865 -0.1692 -0.0022 7 6 6.2780 0.9661 0.0034 8 6 5.6959 2.2164 0.0037 9 6 4.3049 2.3354 -0.0002 10 6 3.6736 3.6735 0.0014 11 7 2.7458 3.9519 -0.8887 12 6 2.1458 5.1455 -0.9292 13 6 1.1564 5.4254 -1.8865 14 6 0.5613 6.6509 -1.9039 15 6 0.9056 7.6452 -0.9932 16 6 1.8561 7.4384 -0.0408 17 6 2.5074 6.1923 0.0285 18 6 3.4905 5.9353 0.9918 19 6 4.0928 4.6673 0.9957 20 6 5.0873 4.3531 1.9423 21 1 5.1963 3.3379 2.2944 22 6 5.9350 5.3575 2.4273 23 7 5.9627 6.5276 1.8442 24 14 7.0258 5.0253 3.9069 25 1 6.8082 3.6344 4.3799 26 1 8.4492 5.2006 3.5219 27 1 6.6866 5.9766 4.9955 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.4953 -0.9480 -0.0110 34 1 5.9473 -1.1459 -0.0033 35 1 7.3540 0.8727 0.0075 36 1 6.3147 3.1016 0.0077 37 1 0.8656 4.6709 -2.6025 38 1 -0.1984 6.8558 -2.6436 39 1 0.4083 8.6025 -1.0437 40 1 2.1084 8.2240 0.6560 41 1 3.7767 6.6896 1.7099 42 1 6.5499 7.2230 2.1798 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239951935.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:47 Heat of formation + Delta-G solvation = 6.229085 kcal Electronic energy + Delta-G solvation = -26055.022022 eV Core-core repulsion = 22542.536761 eV Total energy + Delta-G solvation = -3512.485260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.03645 -40.01526 -38.49462 -37.49545 -35.96309 -33.49827 -33.04096 -32.52690 -30.95124 -29.90177 -28.17762 -27.38911 -26.34873 -24.90771 -23.68257 -22.55218 -22.40764 -21.69084 -19.73989 -18.37311 -17.99323 -17.45770 -17.35345 -16.83083 -16.73167 -16.41955 -15.71221 -15.49252 -15.17906 -15.10162 -14.97132 -14.60133 -14.43386 -14.06837 -13.97804 -13.62953 -13.51381 -13.36891 -13.05892 -12.91692 -12.76906 -12.48289 -12.34100 -12.28765 -12.16802 -11.88991 -11.79883 -11.54481 -11.28520 -10.84680 -10.75320 -10.17785 -9.70835 -9.53899 -9.06908 -8.83240 -8.69340 -6.40696 -0.27254 0.24150 0.55477 0.65274 1.32332 1.37167 1.51566 1.65192 2.13183 2.20726 2.74128 2.88717 2.96129 3.49806 3.68183 3.96247 3.99241 4.18741 4.21675 4.26133 4.33399 4.36236 4.44816 4.51430 4.55013 4.59661 4.61773 4.63696 4.70691 4.78018 4.86844 4.89614 5.05731 5.11296 5.20359 5.27245 5.33756 5.53426 5.56471 5.66214 5.71847 5.75208 5.80048 5.90171 5.96438 6.17747 6.19349 6.22368 6.46922 6.66083 6.71955 7.38692 8.19437 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.007654 B = 0.007219 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.418305 B = 3877.550692 C = 6769.905689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.122 3.878 4 C -0.089 4.089 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.124 4.124 8 C -0.097 4.097 9 C -0.025 4.025 10 C 0.106 3.894 11 N -0.467 5.467 12 C 0.001 3.999 13 C -0.077 4.077 14 C -0.159 4.159 15 C -0.103 4.103 16 C -0.149 4.149 17 C -0.069 4.069 18 C -0.193 4.193 19 C 0.052 3.948 20 C -0.444 4.444 21 H 0.085 0.915 22 C 0.037 3.963 23 N -0.811 5.811 24 Si 0.979 3.021 25 H -0.255 1.255 26 H -0.261 1.261 27 H -0.265 1.265 28 H 0.044 0.956 29 H 0.113 0.887 30 H 0.040 0.960 31 H 0.034 0.966 32 H 0.066 0.934 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.129 0.871 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.822 -6.742 -1.591 7.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C 0.045 3.955 4 C -0.090 4.090 5 C -0.127 4.127 6 C -0.134 4.134 7 C -0.142 4.142 8 C -0.117 4.117 9 C -0.026 4.026 10 C -0.050 4.050 11 N -0.174 5.174 12 C -0.121 4.121 13 C -0.095 4.095 14 C -0.179 4.179 15 C -0.121 4.121 16 C -0.168 4.168 17 C -0.071 4.071 18 C -0.219 4.219 19 C 0.047 3.953 20 C -0.472 4.472 21 H 0.103 0.897 22 C -0.180 4.180 23 N -0.435 5.435 24 Si 0.799 3.201 25 H -0.178 1.178 26 H -0.185 1.185 27 H -0.190 1.190 28 H 0.063 0.937 29 H 0.131 0.869 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.159 0.841 34 H 0.175 0.825 35 H 0.167 0.833 36 H 0.129 0.871 37 H 0.146 0.854 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.950 -7.201 -2.263 8.520 hybrid contribution 0.599 1.476 1.302 2.057 sum -3.352 -5.725 -0.962 6.703 Atomic orbital electron populations 1.22942 0.79427 1.04236 1.00375 1.87734 1.21436 1.27206 1.95564 1.20968 0.90374 0.84154 0.99971 1.19825 0.94010 0.93415 1.01727 1.21027 0.95438 0.96375 0.99836 1.21520 0.92968 0.99546 0.99325 1.21345 1.01167 0.91330 1.00338 1.21231 0.93031 0.98575 0.98817 1.18264 0.93460 0.89691 1.01158 1.21474 0.95946 0.94604 0.92956 1.67458 1.07871 1.19856 1.22198 1.19860 1.02096 0.89986 1.00172 1.20777 0.94392 0.97881 0.96488 1.20796 1.02669 0.92977 1.01430 1.20968 0.96723 0.99996 0.94422 1.21069 0.99135 0.95491 1.01144 1.20020 0.96335 0.95003 0.95790 1.21408 0.99307 0.99230 1.01941 1.19542 0.92254 0.91699 0.91792 1.19693 1.12037 0.96629 1.18865 0.89699 1.26791 0.98295 0.93649 0.99300 1.69822 1.32542 1.04778 1.36392 0.85173 0.77753 0.80064 0.77078 1.17809 1.18546 1.18971 0.93686 0.86902 0.94149 0.94807 0.91639 0.84078 0.82505 0.83301 0.87073 0.85361 0.83300 0.83598 0.86295 0.86858 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.40 -13.00 9.18 -148.98 -1.37 -14.37 16 3 C 0.12 4.65 5.09 71.24 0.36 5.02 16 4 C -0.09 -3.52 5.91 -19.60 -0.12 -3.63 16 5 C -0.11 -3.58 9.37 22.23 0.21 -3.37 16 6 C -0.12 -3.28 10.04 22.33 0.22 -3.06 16 7 C -0.12 -3.90 10.03 22.23 0.22 -3.67 16 8 C -0.10 -3.93 8.13 22.52 0.18 -3.74 16 9 C -0.02 -1.10 5.06 -20.05 -0.10 -1.20 16 10 C 0.11 5.29 5.95 43.97 0.26 5.55 16 11 N -0.47 -22.91 8.38 -169.18 -1.42 -24.33 16 12 C 0.00 0.04 6.74 41.54 0.28 0.32 16 13 C -0.08 -3.00 9.98 22.35 0.22 -2.77 16 14 C -0.16 -5.19 9.90 22.03 0.22 -4.97 16 15 C -0.10 -3.46 9.91 22.00 0.22 -3.24 16 16 C -0.15 -6.12 9.80 22.40 0.22 -5.90 16 17 C -0.07 -3.39 5.87 -20.10 -0.12 -3.51 16 18 C -0.19 -10.25 8.50 23.22 0.20 -10.05 16 19 C 0.05 2.76 5.65 -19.91 -0.11 2.65 16 20 C -0.44 -22.41 7.07 23.36 0.17 -22.24 16 21 H 0.08 4.21 6.94 -2.91 -0.02 4.19 16 22 C 0.04 1.73 5.23 85.30 0.45 2.18 16 23 N -0.81 -40.25 11.07 21.85 0.24 -40.01 16 24 Si 0.98 35.95 29.58 68.60 2.03 37.98 16 25 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 26 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 27 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 2.66 6.94 -2.39 -0.02 2.65 16 33 H 0.14 4.15 7.00 -2.91 -0.02 4.13 16 34 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 36 H 0.11 4.84 7.39 -2.91 -0.02 4.82 16 37 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 38 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 39 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 40 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 41 H 0.11 6.18 6.51 -2.91 -0.02 6.16 16 42 H 0.29 13.08 8.29 -92.70 -0.77 12.31 16 Total: -1.00 -62.32 352.77 4.75 -57.57 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 1.04 Total: 36.92 kcal Atomic # 6 Polarization: -58.00 SS G_CDS: 4.23 Total: -53.77 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -1.18 Total: -64.34 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -1.37 Total: -14.37 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 2.03 Total: 37.98 kcal Total: -62.32 4.75 -57.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239951935.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.802 kcal (2) G-P(sol) polarization free energy of solvation -62.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds