Wall clock time and date at job start Tue Mar 31 2020 12:10:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35600 * 116.99871 * 2 1
4 4 C 1.39150 * 119.88474 * 359.97438 * 3 2 1
5 5 C 1.36414 * 120.43783 * 179.97438 * 4 3 2
6 6 C 1.40915 * 120.18824 * 0.04837 * 5 4 3
7 7 C 1.41244 * 120.11884 * 179.97438 * 6 5 4
8 8 H 1.08002 * 119.99792 * 24.52766 * 7 6 5
9 9 C 1.39859 * 119.99851 * 204.53436 * 7 6 5
10 10 N 1.30889 * 120.00501 * 17.92129 * 9 7 6
11 11 Si 1.86798 * 119.99744 * 197.92349 * 9 7 6
12 12 H 1.48504 * 109.47231 * 89.99923 * 11 9 7
13 13 H 1.48498 * 109.47557 * 209.99848 * 11 9 7
14 14 H 1.48496 * 109.47324 * 330.00214 * 11 9 7
15 15 C 1.40614 * 119.76268 * 359.97438 * 6 5 4
16 16 C 1.38601 * 119.57240 * 359.97438 * 15 6 5
17 17 C 1.48335 * 120.09877 * 180.02562 * 16 15 6
18 18 C 1.39362 * 120.12343 * 129.72321 * 17 16 15
19 19 C 1.38014 * 119.86936 * 179.77199 * 18 17 16
20 20 C 1.38321 * 120.12957 * 0.50373 * 19 18 17
21 21 C 1.50695 * 119.87741 * 179.76886 * 20 19 18
22 22 C 1.47206 * 115.54799 * 214.39676 * 21 20 19
23 23 N 8.35542 * 156.57253 * 190.92824 * 2 1 3
24 24 C 1.53001 * 117.50041 * 68.72892 * 21 20 19
25 25 C 1.52995 * 117.50223 * 0.06788 * 21 20 19
26 26 C 1.38334 * 120.24638 * 359.74929 * 20 19 18
27 27 C 1.38015 * 120.12336 * 359.97438 * 26 20 19
28 28 H 1.08996 * 109.47576 * 60.00186 * 1 2 3
29 29 H 1.09001 * 109.47125 * 180.02562 * 1 2 3
30 30 H 1.08999 * 109.47154 * 299.99707 * 1 2 3
31 31 H 1.07992 * 119.77903 * 0.02562 * 4 3 2
32 32 H 1.07997 * 119.90328 * 180.02562 * 5 4 3
33 33 H 0.96999 * 120.00322 * 179.97438 * 10 9 7
34 34 H 1.07995 * 120.21581 * 180.27052 * 15 6 5
35 35 H 1.07993 * 120.06356 * 0.02562 * 18 17 16
36 36 H 1.08006 * 119.92925 * 180.25086 * 19 18 17
37 37 H 1.08997 * 117.49376 * 359.97438 * 24 21 20
38 38 H 1.08990 * 117.49937 * 145.01792 * 24 21 20
39 39 H 1.08997 * 117.50285 * 214.98543 * 25 21 20
40 40 H 1.09003 * 117.49511 * 359.97438 * 25 21 20
41 41 H 1.07994 * 119.93898 * 180.02562 * 26 20 19
42 42 H 1.07992 * 120.06302 * 179.97438 * 27 26 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0446 1.2082 0.0000
4 6 1.2843 2.3737 -0.0005
5 6 1.8919 3.5951 0.0000
6 6 3.2980 3.6871 0.0000
7 6 3.9255 4.9525 0.0000
8 1 3.4030 5.8143 0.3883
9 6 5.2233 5.0894 -0.5029
10 7 5.7255 4.1631 -1.2794
11 14 6.2402 6.5943 -0.0662
12 1 7.0149 6.3261 1.1720
13 1 7.1752 6.8999 -1.1787
14 1 5.3389 7.7535 0.1553
15 6 4.0742 2.5146 0.0001
16 6 3.4466 1.2788 0.0007
17 6 4.2541 0.0344 0.0013
18 6 3.9885 -0.9712 0.9289
19 6 4.7399 -2.1288 0.9218
20 6 5.7618 -2.2876 0.0031
21 6 6.5821 -3.5517 0.0038
22 6 8.0007 -3.3881 -0.3535
23 7 9.0956 -3.2618 -0.6298
24 6 5.8885 -4.8442 -0.4314
25 6 6.2339 -4.6193 1.0428
26 6 6.0332 -1.2905 -0.9165
27 6 5.2846 -0.1310 -0.9223
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 0.2063 2.3108 -0.0005
32 1 1.2934 4.4941 0.0000
33 1 6.6255 4.2583 -1.6285
34 1 5.1524 2.5765 0.0046
35 1 3.1936 -0.8465 1.6492
36 1 4.5323 -2.9104 1.6376
37 1 4.8388 -4.7802 -0.7177
38 1 6.4827 -5.5735 -0.9818
39 1 7.0551 -5.2008 1.4617
40 1 5.4116 -4.4072 1.7263
41 1 6.8319 -1.4199 -1.6318
42 1 5.4976 0.6469 -1.6404
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001243423327.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:10:05
Heat of formation + Delta-G solvation = 47.110302 kcal
Electronic energy + Delta-G solvation = -25178.138673 eV
Core-core repulsion = 21667.426156 eV
Total energy + Delta-G solvation = -3510.712517 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 319.131 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.08602 -40.31036 -38.52165 -37.94424 -36.65990 -35.20087 -33.24194 -31.84640
-30.94754 -29.82509 -28.25708 -26.48416 -25.79803 -23.89862 -23.43016 -23.00015
-22.22258 -21.45660 -19.21526 -18.82168 -18.47761 -17.28797 -17.02261 -16.45968
-16.28434 -16.14416 -15.63819 -15.47428 -15.01804 -14.83101 -14.74647 -14.53033
-14.34277 -14.30629 -13.84365 -13.78251 -13.58581 -13.38705 -13.21036 -12.87936
-12.75111 -12.59177 -12.36616 -12.31551 -12.26867 -11.98482 -11.73906 -11.57176
-11.53169 -11.29371 -11.14610 -10.86954 -9.84354 -9.77601 -9.10584 -8.78440
-8.52014 -6.22320 0.18459 0.57234 0.99751 1.07612 1.37175 1.49374
1.49634 1.52881 1.63027 2.20740 2.63931 2.74744 2.80325 2.89875
3.14958 3.44573 3.67171 3.83653 4.01535 4.04339 4.13427 4.19618
4.32619 4.50773 4.55628 4.56698 4.70415 4.71079 4.75938 4.83947
4.84455 5.03944 5.06891 5.11345 5.18050 5.23520 5.28239 5.30719
5.45671 5.53985 5.59853 5.69202 5.81511 5.89330 6.08874 6.13657
6.28273 6.46561 6.57773 6.82618 6.96029 7.10650 8.36210
Molecular weight = 319.13amu
Principal moments of inertia in cm(-1)
A = 0.011102 B = 0.004084 C = 0.003091
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2521.458815 B = 6854.754050 C = 9057.512540
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.329 6.329
3 C 0.023 3.977
4 C -0.171 4.171
5 C -0.200 4.200
6 C 0.053 3.947
7 C -0.500 4.500
8 H 0.075 0.925
9 C 0.036 3.964
10 N -0.830 5.830
11 Si 0.975 3.025
12 H -0.266 1.266
13 H -0.272 1.272
14 H -0.256 1.256
15 C -0.136 4.136
16 C -0.078 4.078
17 C -0.030 4.030
18 C -0.095 4.095
19 C -0.097 4.097
20 C -0.052 4.052
21 C -0.038 4.038
22 C 0.267 3.733
23 N -0.482 5.482
24 C -0.119 4.119
25 C -0.121 4.121
26 C -0.119 4.119
27 C -0.121 4.121
28 H 0.045 0.955
29 H 0.119 0.881
30 H 0.053 0.947
31 H 0.132 0.868
32 H 0.104 0.896
33 H 0.284 0.716
34 H 0.106 0.894
35 H 0.129 0.871
36 H 0.170 0.830
37 H 0.129 0.871
38 H 0.117 0.883
39 H 0.120 0.880
40 H 0.140 0.860
41 H 0.112 0.888
42 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.960 -17.028 4.609 18.325
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.244 6.244
3 C -0.021 4.021
4 C -0.189 4.189
5 C -0.220 4.220
6 C 0.051 3.949
7 C -0.530 4.530
8 H 0.093 0.907
9 C -0.177 4.177
10 N -0.457 5.457
11 Si 0.797 3.203
12 H -0.191 1.191
13 H -0.196 1.196
14 H -0.180 1.180
15 C -0.156 4.156
16 C -0.079 4.079
17 C -0.030 4.030
18 C -0.113 4.113
19 C -0.115 4.115
20 C -0.053 4.053
21 C -0.042 4.042
22 C -0.049 4.049
23 N -0.158 5.158
24 C -0.157 4.157
25 C -0.158 4.158
26 C -0.137 4.137
27 C -0.139 4.139
28 H 0.063 0.937
29 H 0.137 0.863
30 H 0.071 0.929
31 H 0.150 0.850
32 H 0.122 0.878
33 H 0.094 0.906
34 H 0.124 0.876
35 H 0.147 0.853
36 H 0.187 0.813
37 H 0.148 0.852
38 H 0.135 0.865
39 H 0.138 0.862
40 H 0.158 0.842
41 H 0.130 0.870
42 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -2.999 -17.067 4.030 17.791
hybrid contribution 0.149 1.816 -0.411 1.868
sum -2.850 -15.251 3.619 15.931
Atomic orbital electron populations
1.23105 0.78357 1.04518 1.00944 1.85864 1.21636 1.26460 1.90425
1.18609 0.90602 0.84258 1.08667 1.20678 0.99220 0.91987 1.07041
1.20845 0.94247 0.96587 1.10312 1.17845 0.91885 0.93733 0.91474
1.19675 0.99906 0.95206 1.38221 0.90682 1.26625 0.98562 1.00618
0.91942 1.69889 1.16711 1.35558 1.23572 0.85302 0.78058 0.78225
0.78757 1.19053 1.19643 1.17987 1.21202 0.99023 0.90428 1.04942
1.18213 0.90131 0.92778 1.06784 1.18931 0.94609 0.93638 0.95827
1.21254 0.99479 0.92876 0.97727 1.21144 0.94353 0.97698 0.98285
1.18668 0.96855 0.93047 0.96710 1.16980 0.82108 0.91875 1.13223
1.28133 0.93552 0.91763 0.91476 1.81270 1.13755 1.09364 1.11410
1.23483 1.02564 0.91635 0.98041 1.23570 1.04712 0.94904 0.92662
1.20805 0.99651 0.93737 0.99525 1.21164 0.96077 0.97620 0.99080
0.93657 0.86313 0.92863 0.85040 0.87766 0.90560 0.87572 0.85323
0.81253 0.85235 0.86458 0.86194 0.84189 0.87023 0.88323
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.64 9.80 113.37 1.11 1.76 16
2 O -0.33 -11.74 8.84 -89.11 -0.79 -12.53 16
3 C 0.02 0.99 6.63 23.01 0.15 1.14 16
4 C -0.17 -7.25 8.95 22.06 0.20 -7.05 16
5 C -0.20 -9.68 9.72 22.50 0.22 -9.46 16
6 C 0.05 2.85 5.57 -21.31 -0.12 2.74 16
7 C -0.50 -27.26 9.04 23.40 0.21 -27.04 16
8 H 0.08 3.94 7.91 -2.91 -0.02 3.91 16
9 C 0.04 1.87 5.13 85.23 0.44 2.31 16
10 N -0.83 -44.70 10.96 21.81 0.24 -44.46 16
11 Si 0.98 39.56 29.59 68.60 2.03 41.59 16
12 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16
13 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16
14 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16
15 C -0.14 -7.27 8.13 22.94 0.19 -7.08 16
16 C -0.08 -3.68 5.48 -19.98 -0.11 -3.79 16
17 C -0.03 -1.22 5.26 -20.05 -0.11 -1.32 16
18 C -0.10 -3.04 8.78 22.49 0.20 -2.85 16
19 C -0.10 -2.29 9.37 22.24 0.21 -2.08 16
20 C -0.05 -1.30 5.44 -19.82 -0.11 -1.41 16
21 C -0.04 -0.71 2.43 -54.73 -0.13 -0.84 16
22 C 0.27 6.76 14.07 89.44 1.26 8.02 16
23 N -0.48 -14.96 18.54 20.01 0.37 -14.59 16
24 C -0.12 -1.27 9.91 30.62 0.30 -0.96 16
25 C -0.12 -1.14 9.55 30.62 0.29 -0.85 16
26 C -0.12 -3.88 9.30 22.24 0.21 -3.67 16
27 C -0.12 -4.83 9.51 22.49 0.21 -4.62 16
28 H 0.04 1.13 7.65 -2.39 -0.02 1.11 16
29 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16
30 H 0.05 1.24 7.65 -2.39 -0.02 1.22 16
31 H 0.13 4.58 6.25 -2.91 -0.02 4.56 16
32 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16
33 H 0.28 14.07 8.30 -92.71 -0.77 13.30 16
34 H 0.11 6.04 6.15 -2.91 -0.02 6.02 16
35 H 0.13 3.94 7.70 -2.91 -0.02 3.91 16
36 H 0.17 2.33 5.91 -2.91 -0.02 2.31 16
37 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16
38 H 0.12 1.00 8.14 -2.39 -0.02 0.99 16
39 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16
40 H 0.14 0.77 6.06 -2.39 -0.01 0.75 16
41 H 0.11 3.54 7.46 -2.91 -0.02 3.52 16
42 H 0.10 4.41 8.04 -2.91 -0.02 4.39 16
Total: -1.00 -68.87 361.04 7.53 -61.34
By element:
Atomic # 1 Polarization: 24.65 SS G_CDS: 1.06 Total: 25.71 kcal
Atomic # 6 Polarization: -61.69 SS G_CDS: 4.62 Total: -57.07 kcal
Atomic # 7 Polarization: -59.65 SS G_CDS: 0.61 Total: -59.04 kcal
Atomic # 8 Polarization: -11.74 SS G_CDS: -0.79 Total: -12.53 kcal
Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal
Total: -68.87 7.53 -61.34 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001243423327.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.449 kcal
(2) G-P(sol) polarization free energy of solvation -68.869 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.580 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.530 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.339 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.110 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds